UHGV-0158531

Genome information

Genome length 30,959 bps

CDS count 41

Completeness 76.79% (medium-quality)

geNomad score 0.9813

Prediction confidence Confident

Genome information
Genome ID	UHGV-0158531
vOTU ID	vOTU-016917
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_453259
BioSample	SAMN05971514
Country	United States
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	76.79% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	24
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9813
Virus hallmark genes (geNomad)	8
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	56.1
Jumbo phage	No

Genome content
Genome length	30,959 bps
GC content	40.04%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	41
CDS density	94.86%
Average CDS length	719.56 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0158531_3	UniRef90	UniRef90_A0A316P9E8	Cu_amine_oxidN1 domain-containing protein	NA
UHGV-0158531_3	eggNOG-mapper	1408422.JHYF01000017_gene1892	NA	NA
UHGV-0158531_3	Pfam	PF07833	Copper amine oxidase N-terminal domain	Cu_amine_oxidN1
UHGV-0158531_4	PHROG	phrog_1067	minor head protein	head and packaging
UHGV-0158531_4	UniRef90	UniRef90_R6MQW9	Phage minor structural protein	NA
UHGV-0158531_4	eggNOG-mapper	1304880.JAGB01000002_gene2206	Phage minor structural protein	NA
UHGV-0158531_4	Pfam	PF18994	Prophage endopeptidase tail N-terminal domain	Prophage_tailD1
UHGV-0158531_4	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-0158531_4	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-0158531_4	COG	COG0840	Methyl-accepting chemotaxis protein (MCP)	NA
UHGV-0158531_4	Structural annotation	PF06605, PF18994, TIGR01665, COG4926	NA	NA
UHGV-0158531_5	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-0158531_5	UniRef90	UniRef90_R6MKV6	Phage-related protein	NA
UHGV-0158531_5	Pfam	PF05709	Phage tail protein RIFT-related domain	Sipho_tail
UHGV-0158531_5	COG	COG4722	Phage-related protein YomH	NA
UHGV-0158531_5	Structural annotation	PF05709, PF21766, TIGR01633, COG4722	NA	NA
UHGV-0158531_6	KOfam	K20478	GOLGB1; golgin subfamily B member 1	NA
UHGV-0158531_6	PHROG	phrog_17321	NA	unknown function
UHGV-0158531_6	UniRef90	UniRef90_A0A416CW06	Phage tail tape measure protein	NA
UHGV-0158531_6	eggNOG-mapper	536232.CLM_2046	phage tail tape measure protein	NA
UHGV-0158531_6	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-0158531_6	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-0158531_6	COG	COG1340	NA	NA
UHGV-0158531_6	Structural annotation	PF10145, TIGR01760	NA	NA
UHGV-0158531_8	PHROG	phrog_88	major tail protein	tail
UHGV-0158531_8	UniRef90	UniRef90_A0A1C6E366	Phage major tail protein, phi13 family	NA
UHGV-0158531_8	eggNOG-mapper	1348908.KI518589_gene2530	NA	NA
UHGV-0158531_8	NCBIFam	TIGR01603.1	major tail protein	NA
UHGV-0158531_8	Structural annotation	PF04630, TIGR01603, COG3498	NA	NA
UHGV-0158531_9	PHROG	phrog_78	tail terminator	connector
UHGV-0158531_9	Structural annotation	PF05657	NA	NA
UHGV-0158531_10	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0158531_10	UniRef90	UniRef90_A0A7X5KS36	HK97 gp10 family phage protein	NA
UHGV-0158531_10	eggNOG-mapper	562981.HMPREF0428_01816	NA	NA
UHGV-0158531_10	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-0158531_10	NCBIFam	TIGR01725.1	HK97-gp10 family putative phage morphogenesis protein	NA
UHGV-0158531_10	Structural annotation	PF20039, TIGR01725, COG5005	NA	NA
UHGV-0158531_11	eggNOG-mapper	931276.Cspa_c26940	NA	NA
UHGV-0158531_11	Pfam	PF05521	Phage head-tail joining protein	Phage_H_T_join
UHGV-0158531_11	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0158531_12	PHROG	phrog_132	head-tail adaptor	connector
UHGV-0158531_12	UniRef90	UniRef90_UPI00195DE3AA	phage head-tail connector protein	NA
UHGV-0158531_12	eggNOG-mapper	97138.C820_00227	Phage gp6-like head-tail connector protein	NA
UHGV-0158531_12	Pfam	PF05135	Phage gp6-like head-tail connector protein	Phage_connect_1
UHGV-0158531_12	Structural annotation	PF05135	NA	NA
UHGV-0158531_13	PHROG	phrog_10	major head protein	head and packaging
UHGV-0158531_13	UniRef90	UniRef90_A0A1C6E4H6	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0158531_13	eggNOG-mapper	1123250.KB908414_gene2105	Phage capsid family	NA
UHGV-0158531_13	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0158531_13	Pfam	PF18316	S-layer protein SbsC C-terminal domain	S-l_SbsC_C
UHGV-0158531_13	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0158531_13	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0158531_13	Structural annotation	PF05065, PF13620, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0158531_14	PHROG	phrog_172	head scaffolding protein	head and packaging
UHGV-0158531_14	UniRef90	UniRef90_A0A416CVN6	NA	NA
UHGV-0158531_14	eggNOG-mapper	1123250.KB908414_gene2104	NA	NA
UHGV-0158531_14	Pfam	PF14265	NA	DUF4355
UHGV-0158531_14	Structural annotation	PF14265	NA	NA
UHGV-0158531_16	PHROG	phrog_115	minor head protein	head and packaging
UHGV-0158531_16	UniRef90	UniRef90_A0A416CW54	Phage_Mu_F domain-containing protein	NA
UHGV-0158531_16	eggNOG-mapper	1209989.TepiRe1_1146	Phage Mu protein F like protein	NA
UHGV-0158531_16	Pfam	PF04233	Phage Mu protein F like protein	Phage_Mu_F
UHGV-0158531_16	NCBIFam	TIGR01641.1	minor capsid protein	NA
UHGV-0158531_16	COG	COG2369	NA	NA
UHGV-0158531_16	Structural annotation	PF04233, PF00583, TIGR01641, NF000487, COG1246, COG2369	NA	NA
UHGV-0158531_17	PHROG	phrog_64	portal protein	head and packaging
UHGV-0158531_17	UniRef90	UniRef90_A0A416CW21	Phage portal protein	NA
UHGV-0158531_17	eggNOG-mapper	1461246.X2KPH1_9VIRU	Phage portal protein, SPP1 Gp6-like	NA
UHGV-0158531_17	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0158531_17	NCBIFam	TIGR01538.1	phage portal protein	NA
UHGV-0158531_17	Structural annotation	PF05133, MF_04120, TIGR01538, COG3567	NA	NA
UHGV-0158531_18	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0158531_18	PHROG	phrog_3717	terminase large subunit	head and packaging
UHGV-0158531_18	UniRef90	UniRef90_A0A416CVQ3	PBSX family phage terminase large subunit	NA
UHGV-0158531_18	eggNOG-mapper	1256908.HMPREF0373_00486	Phage terminase, large subunit, PBSX family	NA
UHGV-0158531_18	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-0158531_18	Pfam	PF17288	Terminase RNAseH like domain	Terminase_3C
UHGV-0158531_18	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0158531_18	COG	COG1783	Phage terminase large subunit	NA
UHGV-0158531_18	Structural annotation	PF04466, PF17288, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0158531_19	KOfam	K07474	xtmA; phage terminase small subunit	NA
UHGV-0158531_19	PHROG	phrog_51	terminase small subunit	head and packaging
UHGV-0158531_19	UniRef90	UniRef90_UPI00051C2283	terminase small subunit	NA
UHGV-0158531_19	eggNOG-mapper	1256908.HMPREF0373_00489	Terminase small subunit	NA
UHGV-0158531_19	Pfam	PF03592	Terminase small subunit	Terminase_2
UHGV-0158531_19	COG	COG3728	Phage terminase, small subunit	NA
UHGV-0158531_19	Structural annotation	PF03592, COG3728	NA	NA
UHGV-0158531_20	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0158531_20	UniRef90	UniRef90_A0A174ZYK6	Phage transcriptional regulator, RinA family	NA
UHGV-0158531_20	eggNOG-mapper	397290.C810_01391	NA	NA
UHGV-0158531_20	Structural annotation	PF02996	NA	NA
UHGV-0158531_23	PHROG	phrog_478	site-specific recombination directionality factor RDF	integration and excision
UHGV-0158531_23	UniRef90	UniRef90_A0A373Q857	YopX domain-containing protein	NA
UHGV-0158531_23	eggNOG-mapper	1111121.HMPREF1247_0834	NA	NA
UHGV-0158531_24	KOfam	K00390	cysH; phosphoadenosine phosphosulfate reductase [EC:1.8.4.8 1.8.4.10]	NA
UHGV-0158531_24	PHROG	phrog_424	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
UHGV-0158531_24	UniRef90	UniRef90_A0A7X5R5B6	Adenylyl-sulfate reductase	NA
UHGV-0158531_24	eggNOG-mapper	1408437.JNJN01000032_gene2312	Phosphoadenosine phosphosulfate reductase	NA
UHGV-0158531_24	PADLOC	BrxP_00001	BrxP	BREX
UHGV-0158531_24	Pfam	PF01507	Phosphoadenosine phosphosulfate reductase family	PAPS_reduct
UHGV-0158531_24	COG	COG0175	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	NA
UHGV-0158531_24	Structural annotation	PF01507, MF_00063, NF010369, COG0175	NA	NA
UHGV-0158531_25	PHROG	phrog_8684	NA	unknown function
UHGV-0158531_25	UniRef90	UniRef90_A0A1C5RI52	YopX protein	NA
UHGV-0158531_25	eggNOG-mapper	411473.RUMCAL_00280	YopX protein	NA
UHGV-0158531_25	Pfam	PF09643	YopX protein	YopX
UHGV-0158531_25	NCBIFam	TIGR01671.1	phage conserved hypothetical protein TIGR01671	NA
UHGV-0158531_25	Structural annotation	PF09643, TIGR01671	NA	NA
UHGV-0158531_26	eggNOG-mapper	1408324.JNJK01000014_gene1984	NA	NA
UHGV-0158531_26	Structural annotation	NF040559, COG0543	NA	NA
UHGV-0158531_28	PHROG	phrog_6802	NA	unknown function
UHGV-0158531_28	UniRef90	UniRef90_A0A373PQB3	NA	NA
UHGV-0158531_28	eggNOG-mapper	1256908.HMPREF0373_03028	NA	NA
UHGV-0158531_28	Pfam	PF18662	Cch helix turn helix domain	HTH_56
UHGV-0158531_29	PHROG	phrog_419	NA	unknown function
UHGV-0158531_29	UniRef90	UniRef90_A0A060QMU0	NA	NA
UHGV-0158531_29	eggNOG-mapper	1123312.KB904569_gene346	NA	NA
UHGV-0158531_29	Structural annotation	PF14083	NA	NA
UHGV-0158531_30	PHROG	phrog_2245	nucleoside triphosphate pyrophosphohydrolase	other
UHGV-0158531_30	UniRef90	UniRef90_A0A1C5STJ7	MazG domain-containing protein	NA
UHGV-0158531_30	Pfam	PF14354	Restriction alleviation protein Lar	Lar_restr_allev
UHGV-0158531_30	NCBIFam	TIGR03655.1	Lar family restriction alleviation protein	NA
UHGV-0158531_30	dbAPIS	APIS033	Lar is functionally similar to RaI, is able to alleviate restriction and enhance modification by EcoKI. And the nucleotide sequences of their genes share 47% identity, indicating a common origin.	NA
UHGV-0158531_30	Structural annotation	PF14354, COG3478	NA	NA
UHGV-0158531_31	eggNOG-mapper	1118055.CAGU01000029_gene22	NA	NA
UHGV-0158531_34	PHROG	phrog_1770	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0158531_34	eggNOG-mapper	536233.CLO_1822	NA	NA
UHGV-0158531_34	Structural annotation	PF02075, MF_00034, NF000711, COG0817	NA	NA
UHGV-0158531_35	KOfam	K02086	dnaD; DNA replication protein	NA
UHGV-0158531_35	PHROG	phrog_2562	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0158531_35	UniRef90	UniRef90_UPI00137AD09D	NA	NA
UHGV-0158531_35	eggNOG-mapper	445971.ANASTE_00700	NA	NA
UHGV-0158531_35	Pfam	PF14297	Lin1244/Lin1753-like, N-terminal	Lin1244_N
UHGV-0158531_35	Pfam	PF07261	Replication initiation and membrane attachment	DnaB_2
UHGV-0158531_35	NCBIFam	TIGR01446.1	DnaD domain protein	NA
UHGV-0158531_35	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0158531_35	Structural annotation	PF14297, PF07261, TIGR01446, COG3935	NA	NA
UHGV-0158531_36	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0158531_36	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0158531_36	UniRef90	UniRef90_R6M3F2	Single-stranded DNA-binding protein	NA
UHGV-0158531_36	eggNOG-mapper	588581.Cpap_1479	Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism	NA
UHGV-0158531_36	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0158531_36	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0158531_36	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0158531_36	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0158531_36	Structural annotation	PF00436, MF_00984, NF005241, COG0629	NA	NA
UHGV-0158531_38	PHROG	phrog_7566	NA	unknown function
UHGV-0158531_38	UniRef90	UniRef90_A0A8D9UHC0	Recombination enhancement function protein nuclease	NA
UHGV-0158531_38	eggNOG-mapper	693746.OBV_25470	NA	NA
UHGV-0158531_39	PHROG	phrog_72	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
UHGV-0158531_39	UniRef90	UniRef90_A0A8D9PDS2	NinB protein	NA
UHGV-0158531_39	eggNOG-mapper	445972.ANACOL_01825	NA	NA
UHGV-0158531_39	Structural annotation	PF05772	NA	NA
UHGV-0158531_40	PHROG	phrog_7838	exonuclease	DNA, RNA and nucleotide metabolism
UHGV-0158531_40	UniRef90	UniRef90_A0A8D9UGW3	DNA repair protein RAD52-like protein	NA
UHGV-0158531_40	eggNOG-mapper	742767.HMPREF9456_02052	NA	NA
UHGV-0158531_41	PHROG	phrog_253	Mu Gam-like end protection	DNA, RNA and nucleotide metabolism
UHGV-0158531_41	UniRef90	UniRef90_R6MCS5	Siphovirus family protein	NA
UHGV-0158531_41	eggNOG-mapper	411470.RUMGNA_02192	Siphovirus Gp157	NA
UHGV-0158531_41	Pfam	PF05565	Siphovirus Gp157	Sipho_Gp157
UHGV-0158531_41	Structural annotation	PF05565	NA	NA