UHGV-0158685

Genome information

Genome length 35,450 bps

CDS count 50

Completeness 99.90% (high-quality)

geNomad score 0.9775

Prediction confidence Confident

Genome information
Genome ID	UHGV-0158685
vOTU ID	vOTU-061547
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_482939
BioSample	SAMN06115505
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	99.90% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	21
CheckV host markers	2
Recoded stop codon	No

Viral signal
geNomad score	0.9775
Virus hallmark genes (geNomad)	10
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	41.07
Jumbo phage	No

Genome content
Genome length	35,450 bps
GC content	58.70%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	50
CDS density	93.30%
Average CDS length	667.80 bps
tRNA count	2
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0158685_1	KOfam	K04486	E3.1.3.15B; histidinol-phosphatase (PHP family) [EC:3.1.3.15]	NA
UHGV-0158685_1	UniRef90	UniRef90_A0A6N8H2V3	Histidinol-phosphatase	NA
UHGV-0158685_1	eggNOG-mapper	411471.SUBVAR_04637	NA	NA
UHGV-0158685_1	Pfam	PF02811	PHP domain	PHP
UHGV-0158685_1	NCBIFam	TIGR01856.1	histidinol-phosphatase HisJ family protein	NA
UHGV-0158685_1	COG	COG1387	Histidinol phosphatase or related hydrolase of the PHP family	NA
UHGV-0158685_3	PHROG	phrog_13256	NA	unknown function
UHGV-0158685_3	eggNOG-mapper	1226322.HMPREF1545_00132	NA	NA
UHGV-0158685_4	PHROG	phrog_1863	NA	unknown function
UHGV-0158685_4	eggNOG-mapper	693746.OBV_18260	NA	NA
UHGV-0158685_5	KOfam	K19304	mepM; murein DD-endopeptidase [EC:3.4.24.-]	NA
UHGV-0158685_5	PHROG	phrog_10030	tail length tape measure protein	tail
UHGV-0158685_5	UniRef90	UniRef90_UPI0019599082	M23 family metallopeptidase	NA
UHGV-0158685_5	eggNOG-mapper	743718.Isova_1011	Peptidase family M23	NA
UHGV-0158685_5	Pfam	PF01551	Peptidase family M23	Peptidase_M23
UHGV-0158685_5	COG	COG0739	Murein DD-endopeptidase MepM and murein hydrolase activator NlpD, contains LysM domain	NA
UHGV-0158685_5	Structural annotation	PF01551, NF040883	NA	NA
UHGV-0158685_7	KOfam	K24213	C1QTNF9; complement C1q and tumor necrosis factor-related protein 9	NA
UHGV-0158685_7	PHROG	phrog_5073	tail fiber protein	tail
UHGV-0158685_7	eggNOG-mapper	476272.RUMHYD_00002	NA	NA
UHGV-0158685_7	Pfam	PF01391	Collagen triple helix repeat (20 copies)	Collagen
UHGV-0158685_8	PHROG	phrog_9534	head protein	head and packaging
UHGV-0158685_8	eggNOG-mapper	665956.HMPREF1032_02939	COG NOG18825 non supervised orthologous group	NA
UHGV-0158685_8	Structural annotation	PF21567	NA	NA
UHGV-0158685_9	PHROG	phrog_538	minor tail protein	tail
UHGV-0158685_9	UniRef90	UniRef90_UPI000C7C9115	siphovirus ReqiPepy6 Gp37-like family protein	NA
UHGV-0158685_9	eggNOG-mapper	768704.Desmer_4453	Siphovirus ReqiPepy6 Gp37-like protein	NA
UHGV-0158685_9	Pfam	PF14594	Siphovirus ReqiPepy6 Gp37-like protein	Sipho_Gp37
UHGV-0158685_9	Structural annotation	PF14594, TIGR01665, COG4926	NA	NA
UHGV-0158685_10	PHROG	phrog_36410	NA	unknown function
UHGV-0158685_10	UniRef90	UniRef90_UPI000C7AD134	phage tail family protein	NA
UHGV-0158685_10	eggNOG-mapper	411471.SUBVAR_06982	Phage tail protein	NA
UHGV-0158685_10	Structural annotation	PF16774, TIGR01633, COG4722	NA	NA
UHGV-0158685_11	PHROG	phrog_28775	tail length tape measure protein	tail
UHGV-0158685_11	UniRef90	UniRef90_A0A1Q6T3H1	Phage tail tape measure protein	NA
UHGV-0158685_11	eggNOG-mapper	748224.HMPREF9436_03326	Phage tail tape measure protein, TP901 family	NA
UHGV-0158685_11	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-0158685_11	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-0158685_11	COG	COG5283	Phage-related tail protein	NA
UHGV-0158685_11	Structural annotation	PF10145, MF_04138, TIGR01760, COG5280	NA	NA
UHGV-0158685_12	PHROG	phrog_1633	NA	unknown function
UHGV-0158685_12	UniRef90	UniRef90_UPI0015CCAF51	NA	NA
UHGV-0158685_12	eggNOG-mapper	873448.STRPO_0293	NA	NA
UHGV-0158685_12	Pfam	PF17318	NA	DUF5361
UHGV-0158685_12	Structural annotation	PF17318	NA	NA
UHGV-0158685_13	PHROG	phrog_1526	NA	unknown function
UHGV-0158685_13	UniRef90	UniRef90_A0A0E4H642	NA	NA
UHGV-0158685_13	eggNOG-mapper	1321820.HMPREF1983_00926	NA	NA
UHGV-0158685_14	PHROG	phrog_117	major tail protein	tail
UHGV-0158685_14	UniRef90	UniRef90_A0A1Q6T308	Phage tail protein	NA
UHGV-0158685_14	eggNOG-mapper	1121864.OMO_02158	domain, Protein	NA
UHGV-0158685_14	COG	COG5492	NA	NA
UHGV-0158685_14	Structural annotation	PF04630, TIGR01603, COG5437	NA	NA
UHGV-0158685_15	PHROG	phrog_123	tail terminator	connector
UHGV-0158685_15	UniRef90	UniRef90_R6D1D5	NA	NA
UHGV-0158685_15	eggNOG-mapper	1123263.AUKY01000068_gene495	NA	NA
UHGV-0158685_15	Structural annotation	PF06141	NA	NA
UHGV-0158685_16	PHROG	phrog_387	neck protein	connector
UHGV-0158685_16	UniRef90	UniRef90_Q7Y4I0	Gp44	NA
UHGV-0158685_16	eggNOG-mapper	768726.HMPREF9178_1059	NA	NA
UHGV-0158685_17	PHROG	phrog_501	head closure Hc1	connector
UHGV-0158685_17	UniRef90	UniRef90_G2SN45	NA	NA
UHGV-0158685_17	eggNOG-mapper	748224.HMPREF9436_00693	NA	NA
UHGV-0158685_17	Structural annotation	PF12206, COG5614	NA	NA
UHGV-0158685_18	PHROG	phrog_137	head-tail adaptor Ad1	connector
UHGV-0158685_18	UniRef90	UniRef90_E2ZGA8	Phage protein Gp19/Gp15/Gp42	NA
UHGV-0158685_18	Pfam	PF09355	NA	Phage_Gp19
UHGV-0158685_18	Structural annotation	PF09355	NA	NA
UHGV-0158685_19	PHROG	phrog_267	major head protein	head and packaging
UHGV-0158685_19	UniRef90	UniRef90_A0A4P8IA69	Phage capsid and scaffold	NA
UHGV-0158685_19	eggNOG-mapper	748224.HMPREF9436_03335	NA	NA
UHGV-0158685_19	Structural annotation	PF11651, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-0158685_20	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-0158685_20	UniRef90	UniRef90_D4K444	Phage minor structural protein GP20	NA
UHGV-0158685_20	eggNOG-mapper	748224.HMPREF9436_03336	Phage minor structural protein GP20	NA
UHGV-0158685_20	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-0158685_20	Structural annotation	PF06810, MF_02110	NA	NA
UHGV-0158685_22	PHROG	phrog_193	head maturation protease	head and packaging
UHGV-0158685_22	UniRef90	UniRef90_A0A6N8H118	CdiA_C domain-containing protein	NA
UHGV-0158685_22	eggNOG-mapper	748224.HMPREF9436_01469	NA	NA
UHGV-0158685_22	COG	COG5529	Phage-encoded DNA-binding protein ECs1768, contains HTH and DnaT DNA-binding domains	NA
UHGV-0158685_23	PHROG	phrog_104	portal protein	head and packaging
UHGV-0158685_23	UniRef90	UniRef90_A0A3E2U200	Phage portal protein	NA
UHGV-0158685_23	eggNOG-mapper	748224.HMPREF9436_01468	Phage portal protein, SPP1 Gp6-like	NA
UHGV-0158685_23	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0158685_23	Structural annotation	PF05133, MF_04120, TIGR01538, COG5511	NA	NA
UHGV-0158685_24	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0158685_24	UniRef90	UniRef90_UPI001F1A3C47	terminase large subunit	NA
UHGV-0158685_24	eggNOG-mapper	748224.HMPREF9436_01467	phage terminase, large subunit	NA
UHGV-0158685_24	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0158685_24	Structural annotation	PF20441, PF03354, MF_04146, NF033889, COG4626	NA	NA
UHGV-0158685_25	UniRef90	UniRef90_R6GFM0	Conserved domain protein	NA
UHGV-0158685_25	Structural annotation	PF19962	NA	NA
UHGV-0158685_26	PHROG	phrog_338	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0158685_26	UniRef90	UniRef90_UPI0015F33F36	HNH endonuclease	NA
UHGV-0158685_26	eggNOG-mapper	748224.HMPREF9436_01465	NA	NA
UHGV-0158685_27	PHROG	phrog_5763	NA	unknown function
UHGV-0158685_27	eggNOG-mapper	1235800.C819_02269	NA	NA
UHGV-0158685_28	PHROG	phrog_1281	NA	unknown function
UHGV-0158685_28	UniRef90	UniRef90_A0A2V2GNZ1	NA	NA
UHGV-0158685_28	eggNOG-mapper	1035193.HMPREF9073_01980	NA	NA
UHGV-0158685_28	Pfam	PF13274	Antitoxin SocA-like, Panacea domain	SocA_Panacea
UHGV-0158685_28	COG	COG3600	NA	NA
UHGV-0158685_28	Structural annotation	PF13274, COG3600	NA	NA
UHGV-0158685_29	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0158685_29	UniRef90	UniRef90_A0A3E2U224	Sigma70_r4_2 domain-containing protein	NA
UHGV-0158685_29	eggNOG-mapper	411471.SUBVAR_05843	NA	NA
UHGV-0158685_29	Structural annotation	PF04545, NF033634	NA	NA
UHGV-0158685_30	KOfam	K03497	parB, spo0J; ParB family transcriptional regulator, chromosome partitioning protein	NA
UHGV-0158685_30	PHROG	phrog_4715	ParB-like partition protein	DNA, RNA and nucleotide metabolism
UHGV-0158685_30	UniRef90	UniRef90_A0A1Q6T350	ParB domain-containing protein	NA
UHGV-0158685_30	eggNOG-mapper	411471.SUBVAR_05842	ParB-like nuclease domain	NA
UHGV-0158685_30	Pfam	PF02195	ParB/Sulfiredoxin domain	ParBc
UHGV-0158685_30	COG	COG1475	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	NA
UHGV-0158685_30	Structural annotation	PF02195, MF_02015, TIGR04285, COG1475	NA	NA
UHGV-0158685_31	KOfam	K03496	parA, soj; chromosome partitioning protein	NA
UHGV-0158685_31	PHROG	phrog_164	ParA-like partition protein	DNA, RNA and nucleotide metabolism
UHGV-0158685_31	UniRef90	UniRef90_A0A6N8H6J9	ParA family protein	NA
UHGV-0158685_31	eggNOG-mapper	411471.SUBVAR_05839	AAA domain	NA
UHGV-0158685_31	Pfam	PF13614	AAA domain	AAA_31
UHGV-0158685_31	COG	COG1192	ParA-like ATPase involved in chromosome/plasmid partitioning or cellulose biosynthesis protein BcsQ	NA
UHGV-0158685_31	Structural annotation	PF13614, MF_00533, TIGR03453, COG1192	NA	NA
UHGV-0158685_32	KOfam	K02314	dnaB; replicative DNA helicase [EC:5.6.2.3]	NA
UHGV-0158685_32	PHROG	phrog_19	DnaB-like replicative helicase	DNA, RNA and nucleotide metabolism
UHGV-0158685_32	UniRef90	UniRef90_A0A1Q6T363	DNA helicase	NA
UHGV-0158685_32	eggNOG-mapper	411471.SUBVAR_05838	Participates in initiation and elongation during chromosome replication	NA
UHGV-0158685_32	Pfam	PF00772	DnaB-like helicase N terminal domain	DnaB
UHGV-0158685_32	Pfam	PF03796	DnaB-like helicase C terminal domain	DnaB_C
UHGV-0158685_32	COG	COG0305	Replicative DNA helicase	NA
UHGV-0158685_32	Structural annotation	PF03796, PF00772, MF_04155, TIGR00665, COG0305	NA	NA
UHGV-0158685_33	PHROG	phrog_19658	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0158685_33	UniRef90	UniRef90_A0A6N8H2D2	Helix-turn-helix domain-containing protein	NA
UHGV-0158685_33	eggNOG-mapper	411471.SUBVAR_05835	Helix-turn-helix domain	NA
UHGV-0158685_33	Pfam	PF13730	Helix-turn-helix domain	HTH_36
UHGV-0158685_33	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0158685_33	Structural annotation	PF13730, MF_01909, TIGR04176, COG3355	NA	NA
UHGV-0158685_34	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0158685_34	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0158685_34	UniRef90	UniRef90_A0A1Q6T3F1	Single-stranded DNA-binding protein	NA
UHGV-0158685_34	eggNOG-mapper	411471.SUBVAR_04646	Single-stranded DNA-binding protein	NA
UHGV-0158685_34	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0158685_34	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0158685_34	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0158685_34	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0158685_34	Structural annotation	PF00436, MF_00984, NF005241, COG0629	NA	NA
UHGV-0158685_35	PHROG	phrog_1029	NA	unknown function
UHGV-0158685_35	eggNOG-mapper	411471.SUBVAR_05833	NA	NA
UHGV-0158685_35	Structural annotation	PF10065, COG5532	NA	NA
UHGV-0158685_36	PHROG	phrog_997	replication terminator	DNA, RNA and nucleotide metabolism
UHGV-0158685_36	UniRef90	UniRef90_UPI001165C3F9	replication terminator protein	NA
UHGV-0158685_36	eggNOG-mapper	411471.SUBVAR_05832	NA	NA
UHGV-0158685_38	PHROG	phrog_7566	NA	unknown function
UHGV-0158685_38	eggNOG-mapper	411471.SUBVAR_05830	NA	NA
UHGV-0158685_39	COG	COG1327	Transcriptional regulator NrdR, contains Zn-ribbon and ATP-cone domains	NA
UHGV-0158685_39	Structural annotation	PF04606, NF007241	NA	NA
UHGV-0158685_40	PHROG	phrog_72	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
UHGV-0158685_40	eggNOG-mapper	411471.SUBVAR_05829	NA	NA
UHGV-0158685_40	Structural annotation	PF05772, NF007281	NA	NA
UHGV-0158685_41	COG	COG4712	Predicted ssDNA annealing protein, contains HHH motif, Rad42/Rad22/RecT/erf family	NA
UHGV-0158685_41	Structural annotation	PF04098, TIGR00607, COG4712	NA	NA
UHGV-0158685_42	PHROG	phrog_10280	NA	unknown function
UHGV-0158685_42	eggNOG-mapper	742738.HMPREF9460_02068	NA	NA
UHGV-0158685_44	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0158685_44	UniRef90	UniRef90_A0A8I1WKZ5	Helix-turn-helix domain-containing protein	NA
UHGV-0158685_44	eggNOG-mapper	887929.HMP0721_1291	Peptidase S24-like	NA
UHGV-0158685_44	Pfam	PF13560	Helix-turn-helix domain	HTH_31
UHGV-0158685_44	COG	COG1974	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	NA
UHGV-0158685_44	Structural annotation	PF13560, MF_00535, NF007257, COG1396	NA	NA
UHGV-0158685_45	UniRef90	UniRef90_A0A1Y3WR65	Transcriptional regulator	NA
UHGV-0158685_45	eggNOG-mapper	706433.HMPREF9430_01294	Helix-turn-helix XRE-family like proteins	NA
UHGV-0158685_45	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0158685_45	Structural annotation	PF01381, NF041951, COG1476	NA	NA
UHGV-0158685_46	KOfam	K01356	lexA; repressor LexA [EC:3.4.21.88]	NA
UHGV-0158685_46	PHROG	phrog_4	transcriptional repressor	transcription regulation
UHGV-0158685_46	UniRef90	UniRef90_A0A1Q6T3E1	HTH cro/C1-type domain-containing protein	NA
UHGV-0158685_46	eggNOG-mapper	1118057.CAGX01000020_gene1659	Represses a number of genes involved in the response to DNA damage (SOS response)	NA
UHGV-0158685_46	PADLOC	retron_type_VI_hth_cluster2_1	NA	Retron
UHGV-0158685_46	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0158685_46	Pfam	PF00717	Peptidase S24-like	Peptidase_S24
UHGV-0158685_46	COG	COG1974	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	NA
UHGV-0158685_46	Structural annotation	PF00717, PF01381, MF_00015, TIGR00498, COG2932	NA	NA
UHGV-0158685_47	KOfam	K02342	dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]	NA
UHGV-0158685_47	PHROG	phrog_192	DNA polymerase exonuclease subunit	DNA, RNA and nucleotide metabolism
UHGV-0158685_47	UniRef90	UniRef90_A0A837SX23	DNA polymerase III polC-type	NA
UHGV-0158685_47	eggNOG-mapper	1235790.C805_02899	DNA polymerase family B, exonuclease domain	NA
UHGV-0158685_47	PADLOC	cd06127	CAS-I,CAS-II,CAS-III,CAS-IV,CAS-V,CAS-VI; associated	CRISPR-CAS
UHGV-0158685_47	Pfam	PF00929	Exonuclease	RNase_T
UHGV-0158685_47	Pfam	PF00533	BRCA1 C Terminus (BRCT) domain	BRCT
UHGV-0158685_47	NCBIFam	TIGR00573.1	exonuclease, DNA polymerase III, epsilon subunit family	NA
UHGV-0158685_47	COG	COG2176	DNA polymerase III, alpha subunit (gram-positive type)	NA
UHGV-0158685_48	PHROG	phrog_22683	NA	unknown function
UHGV-0158685_48	UniRef90	UniRef90_A0A3E2U205	NA	NA
UHGV-0158685_48	eggNOG-mapper	482234.SCAZ3_03515	NA	NA
UHGV-0158685_48	AcrCatalog	cluster_3962	NA	NA
UHGV-0158685_48	Pfam	PF13783	NA	DUF4177
UHGV-0158685_48	Structural annotation	PF13783, NF008362, COG3499	NA	NA
UHGV-0158685_49	PHROG	phrog_9605	NA	unknown function
UHGV-0158685_49	UniRef90	UniRef90_UPI0014593EBE	NA	NA
UHGV-0158685_49	eggNOG-mapper	641107.CDLVIII_4198	NA	NA
UHGV-0158685_49	Pfam	PF12358	NA	DUF3644
UHGV-0158685_49	Pfam	PF18740	EC042_2821-like Restriction Endonuclease-like domain	EC042_2821
UHGV-0158685_50	KOfam	K14059	int; integrase	NA
UHGV-0158685_50	PHROG	phrog_1	integrase	integration and excision
UHGV-0158685_50	UniRef90	UniRef90_A0A1Q6T3G6	Tyr recombinase domain-containing protein	NA
UHGV-0158685_50	eggNOG-mapper	1203606.HMPREF1526_00215	Phage integrase family	NA
UHGV-0158685_50	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0158685_50	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0158685_50	Structural annotation	PF00589, PF14659, MF_02055, TIGR02224, COG4974	NA	NA