UHGV-0158695

Genome information

Genome length 49,017 bps

CDS count 81

Completeness 84.99% (medium-quality)

geNomad score 0.9816

Prediction confidence Confident

Genome information
Genome ID	UHGV-0158695
vOTU ID	vOTU-027864
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_497745
BioSample	SAMN06110454
Country	Netherlands
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	84.99% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	17
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9816
Virus hallmark genes (geNomad)	7
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	38.95
Jumbo phage	No

Genome content
Genome length	49,017 bps
GC content	40.20%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	81
CDS density	90.70%
Average CDS length	552.26 bps
tRNA count	4
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0158695_1	PHROG	phrog_229	MazG-like pyrophosphatase	other
UHGV-0158695_1	UniRef90	UniRef90_UPI001D02B1F9	nucleoside triphosphate pyrophosphohydrolase family protein	NA
UHGV-0158695_1	eggNOG-mapper	428125.CLOLEP_01391	MazG nucleotide pyrophosphohydrolase domain	NA
UHGV-0158695_1	Pfam	PF03819	MazG nucleotide pyrophosphohydrolase domain	MazG
UHGV-0158695_1	COG	COG1694	NTP pyrophosphatase, house-cleaning of non-canonical NTPs	NA
UHGV-0158695_1	Structural annotation	PF03819, MF_01020, TIGR03188, COG1694	NA	NA
UHGV-0158695_2	eggNOG-mapper	411473.RUMCAL_02525	NA	NA
UHGV-0158695_6	Structural annotation	PF04466	NA	NA
UHGV-0158695_8	UniRef90	UniRef90_A0A8D9PGN8	Acetyl-coA carboxylase zinc finger domain protein	NA
UHGV-0158695_11	PHROG	phrog_38	terminase large subunit	head and packaging
UHGV-0158695_11	UniRef90	UniRef90_UPI001D009E65	phage terminase large subunit	NA
UHGV-0158695_11	eggNOG-mapper	1121866.AUGK01000003_gene1428	chromosome segregation	NA
UHGV-0158695_11	NCBIFam	TIGR01630.1	phage terminase large subunit	NA
UHGV-0158695_11	COG	COG5410	NA	NA
UHGV-0158695_11	Structural annotation	PF17289, PF05876, MF_04147, NF033889, COG5362, COG5410	NA	NA
UHGV-0158695_12	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0158695_12	UniRef90	UniRef90_A0A410QFZ6	NA	NA
UHGV-0158695_12	eggNOG-mapper	994573.T472_0211085	sigma factor activity	NA
UHGV-0158695_12	COG	COG1191	DNA-directed RNA polymerase specialized sigma subunit	NA
UHGV-0158695_12	Structural annotation	PF07374, MF_00674, NF008895, COG1191	NA	NA
UHGV-0158695_13	PHROG	phrog_64	portal protein	head and packaging
UHGV-0158695_13	UniRef90	UniRef90_A0A173UGW9	Phage portal protein, SPP1 family	NA
UHGV-0158695_13	eggNOG-mapper	1298920.KI911353_gene2663	Phage portal protein, SPP1 Gp6-like	NA
UHGV-0158695_13	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0158695_13	Structural annotation	PF05133, MF_04120, TIGR01538, COG5511	NA	NA
UHGV-0158695_14	UniRef90	UniRef90_R6C0B6	Phage capsid scaffolding protein	NA
UHGV-0158695_15	PHROG	phrog_909	major head protein	head and packaging
UHGV-0158695_15	UniRef90	UniRef90_R7BGI8	Phage major capsid protein	NA
UHGV-0158695_16	PHROG	phrog_29	major head protein	head and packaging
UHGV-0158695_16	UniRef90	UniRef90_A0A173UF26	Phage major capsid protein E	NA
UHGV-0158695_16	eggNOG-mapper	1118054.CAGW01000102_gene4700	Phage major capsid protein E	NA
UHGV-0158695_16	Pfam	PF03864	Phage major capsid protein E	Phage_cap_E
UHGV-0158695_16	Structural annotation	PF03864, MF_04133, NF041162, COG4653	NA	NA
UHGV-0158695_17	UniRef90	UniRef90_A0A416G2T8	Rho_N domain-containing protein	NA
UHGV-0158695_17	Structural annotation	PF21169	NA	NA
UHGV-0158695_18	eggNOG-mapper	397290.C810_01402	NA	NA
UHGV-0158695_19	PHROG	phrog_4105	NA	unknown function
UHGV-0158695_19	eggNOG-mapper	411459.RUMOBE_00911	NA	NA
UHGV-0158695_20	PHROG	phrog_443	holin	lysis
UHGV-0158695_20	UniRef90	UniRef90_UPI000BA3B743	holin	NA
UHGV-0158695_20	eggNOG-mapper	411490.ANACAC_00704	Putative lactococcus lactis phage r1t holin	NA
UHGV-0158695_20	Pfam	PF16945	Putative lactococcus lactis phage r1t holin	Phage_r1t_holin
UHGV-0158695_20	Structural annotation	PF16945	NA	NA
UHGV-0158695_21	Structural annotation	PF07405, TIGR01563, COG5614	NA	NA
UHGV-0158695_22	eggNOG-mapper	1298920.KI911353_gene2654	NA	NA
UHGV-0158695_22	AcrCatalog	cluster_24841	NA	NA
UHGV-0158695_23	Structural annotation	PF05657	NA	NA
UHGV-0158695_24	UniRef90	UniRef90_A0A8D9PGN2	Major tail protein	NA
UHGV-0158695_24	Structural annotation	PF16463, TIGR02126, COG5437	NA	NA
UHGV-0158695_27	PHROG	phrog_14030	NA	unknown function
UHGV-0158695_27	UniRef90	UniRef90_A0A3R6ARM6	Peptidoglycan-binding protein	NA
UHGV-0158695_27	eggNOG-mapper	1235793.C809_02691	N-Acetylmuramoyl-L-alanine amidase	NA
UHGV-0158695_27	COG	COG3023	N-acetyl-anhydromuramyl-L-alanine amidase AmpD	NA
UHGV-0158695_28	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-0158695_28	UniRef90	UniRef90_A0A173UHS1	Phage-related protein	NA
UHGV-0158695_28	eggNOG-mapper	1232443.BAIA02000078_gene18	phage tail tape measure protein	NA
UHGV-0158695_28	COG	COG1511	NA	NA
UHGV-0158695_28	Structural annotation	PF20155, MF_04138	NA	NA
UHGV-0158695_29	UniRef90	UniRef90_A0A173UG14	BIG2 domain-containing protein	NA
UHGV-0158695_29	eggNOG-mapper	1410624.JNKK01000088_gene2110	Bacterial Ig-like domain (group 2)	NA
UHGV-0158695_29	Structural annotation	PF02368, PF07233, NF038353, NF005261	NA	NA
UHGV-0158695_30	PHROG	phrog_130	anti-repressor Ant	transcription regulation
UHGV-0158695_30	UniRef90	UniRef90_UPI0009D7969F	transporter	NA
UHGV-0158695_30	eggNOG-mapper	1443125.Z962_p0009	BRO family, N-terminal domain	NA
UHGV-0158695_30	Pfam	PF02498	BRO family, N-terminal domain	Bro-N
UHGV-0158695_30	COG	COG3617	Prophage antirepressor	NA
UHGV-0158695_30	Structural annotation	PF02498, COG3617	NA	NA
UHGV-0158695_31	PHROG	phrog_1194	NA	unknown function
UHGV-0158695_31	Pfam	PF20458	NA	DUF6711
UHGV-0158695_31	Structural annotation	PF20458, TIGR01633, COG3499	NA	NA
UHGV-0158695_32	PHROG	phrog_18190	NA	unknown function
UHGV-0158695_32	UniRef90	UniRef90_A0A173UFM3	Peptidase S74 domain-containing protein	NA
UHGV-0158695_32	eggNOG-mapper	397290.C810_05239	NA	NA
UHGV-0158695_32	Pfam	PF13884	Chaperone of endosialidase	Peptidase_S74
UHGV-0158695_32	Structural annotation	PF05113, NF033848, COG3500	NA	NA
UHGV-0158695_33	PHROG	phrog_17196	kinase	other
UHGV-0158695_33	eggNOG-mapper	483218.BACPEC_01141	NA	NA
UHGV-0158695_33	Structural annotation	PF19537, PF13619, COG3536	NA	NA
UHGV-0158695_34	eggNOG-mapper	665956.HMPREF1032_02937	cellulose 1,4-beta-cellobiosidase activity	NA
UHGV-0158695_34	COG	COG5301	Phage-related tail fiber protein	NA
UHGV-0158695_36	eggNOG-mapper	1232452.BAIB02000007_gene1607	NA	NA
UHGV-0158695_37	NCBIFam	NF040910.1	CD1375 family protein	NA
UHGV-0158695_37	Structural annotation	NF040910	NA	NA
UHGV-0158695_39	KOfam	K18830	pezA; HTH-type transcriptional regulator / antitoxin PezA	NA
UHGV-0158695_39	PHROG	phrog_2967	transcriptional regulator	transcription regulation
UHGV-0158695_39	UniRef90	UniRef90_A0A173RCH7	Putative zinc finger/helix-turn-helix protein, YgiT family	NA
UHGV-0158695_39	eggNOG-mapper	1235790.C805_00012	Helix-turn-helix domain	NA
UHGV-0158695_39	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0158695_39	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0158695_39	Structural annotation	PF01381, MF_00535, NF041951, COG1476	NA	NA
UHGV-0158695_42	PHROG	phrog_4608	anti-repressor	transcription regulation
UHGV-0158695_42	UniRef90	UniRef90_A0A173RD24	ORF6N domain	NA
UHGV-0158695_42	eggNOG-mapper	1408823.AXUS01000024_gene2689	ORF6C domain	NA
UHGV-0158695_42	Pfam	PF10543	ORF6N domain	ORF6N
UHGV-0158695_42	COG	COG3646	Phage regulatory protein Rha	NA
UHGV-0158695_45	PHROG	phrog_26861	NA	unknown function
UHGV-0158695_45	UniRef90	UniRef90_A0A173RCS5	Single-stranded DNA-binding protein	NA
UHGV-0158695_45	eggNOG-mapper	483218.BACPEC_01931	Single-strand binding protein family	NA
UHGV-0158695_45	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0158695_45	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0158695_45	Structural annotation	PF00436, PF13567, MF_00984, NF004476, COG0629	NA	NA
UHGV-0158695_46	KOfam	K19171	dndD; DNA sulfur modification protein DndD	NA
UHGV-0158695_46	PHROG	phrog_77	SbcC-like subunit of palindrome specific endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0158695_46	UniRef90	UniRef90_UPI001D02FD96	AAA family ATPase	NA
UHGV-0158695_46	eggNOG-mapper	1294142.CINTURNW_1008	nuclear chromosome segregation	NA
UHGV-0158695_46	Pfam	PF13555	P-loop containing region of AAA domain	AAA_29
UHGV-0158695_46	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-0158695_46	Structural annotation	PF02463, MF_00449, NF041034, COG0419	NA	NA
UHGV-0158695_49	eggNOG-mapper	1232453.BAIF02000057_gene1135	NA	NA
UHGV-0158695_50	PHROG	phrog_2185	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0158695_50	UniRef90	UniRef90_UPI00157154DF	recombinase RecT	NA
UHGV-0158695_50	eggNOG-mapper	1232453.BAIF02000057_gene1136	NA	NA
UHGV-0158695_50	Structural annotation	NF007351, COG3723	NA	NA
UHGV-0158695_51	PHROG	phrog_25456	NA	unknown function
UHGV-0158695_52	KOfam	K00390	cysH; phosphoadenosine phosphosulfate reductase [EC:1.8.4.8 1.8.4.10]	NA
UHGV-0158695_52	PHROG	phrog_424	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
UHGV-0158695_52	UniRef90	UniRef90_A0A412RQR2	PAPS_reduct domain-containing protein	NA
UHGV-0158695_52	eggNOG-mapper	1280696.ATVY01000096_gene1971	NA	NA
UHGV-0158695_52	Pfam	PF01507	Phosphoadenosine phosphosulfate reductase family	PAPS_reduct
UHGV-0158695_52	COG	COG0175	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	NA
UHGV-0158695_52	Structural annotation	PF01507, MF_00063, TIGR00434, COG0175	NA	NA
UHGV-0158695_53	KOfam	K06167	phnP; phosphoribosyl 1,2-cyclic phosphate phosphodiesterase [EC:3.1.4.55]	NA
UHGV-0158695_53	PHROG	phrog_392	metal-dependent hydrolase	other
UHGV-0158695_53	UniRef90	UniRef90_A0A173REW9	Beta-lactamase superfamily domain	NA
UHGV-0158695_53	eggNOG-mapper	1144313.PMI10_00501	Metallo-beta-lactamase superfamily	NA
UHGV-0158695_53	Pfam	PF12706	Beta-lactamase superfamily domain	Lactamase_B_2
UHGV-0158695_53	COG	COG1235	Phosphoribosyl 1,2-cyclic phosphate phosphodiesterase	NA
UHGV-0158695_53	Structural annotation	PF02112, MF_01818, NF041851, COG1234	NA	NA
UHGV-0158695_56	PHROG	phrog_19106	NA	unknown function
UHGV-0158695_56	UniRef90	UniRef90_A0A173RDE6	Group I intron endonuclease	NA
UHGV-0158695_56	eggNOG-mapper	658655.HMPREF0988_00875	NA	NA
UHGV-0158695_56	Structural annotation	TIGR01453	NA	NA
UHGV-0158695_58	PHROG	phrog_11769	NA	unknown function
UHGV-0158695_58	UniRef90	UniRef90_A0A173RDT0	Phage replisome organizer, putative, N-terminal region	NA
UHGV-0158695_58	eggNOG-mapper	536232.CLM_1634	N-terminal phage replisome organiser (Phage_rep_org_N)	NA
UHGV-0158695_58	Pfam	PF09681	N-terminal phage replisome organiser (Phage_rep_org_N)	Phage_rep_org_N
UHGV-0158695_58	NCBIFam	TIGR01714.1	phage replisome organizer, putative, N-terminal region	NA
UHGV-0158695_58	Structural annotation	PF09681, TIGR01714, COG3388	NA	NA
UHGV-0158695_59	KOfam	K02314	dnaB; replicative DNA helicase [EC:5.6.2.3]	NA
UHGV-0158695_59	PHROG	phrog_19	DnaB-like replicative helicase	DNA, RNA and nucleotide metabolism
UHGV-0158695_59	UniRef90	UniRef90_A0A173RD23	DNA helicase	NA
UHGV-0158695_59	eggNOG-mapper	1298920.KI911353_gene2061	Participates in initiation and elongation during chromosome replication	NA
UHGV-0158695_59	Pfam	PF00772	DnaB-like helicase N terminal domain	DnaB
UHGV-0158695_59	Pfam	PF03796	DnaB-like helicase C terminal domain	DnaB_C
UHGV-0158695_59	COG	COG0305	Replicative DNA helicase	NA
UHGV-0158695_59	Structural annotation	PF03796, PF00772, MF_04155, TIGR00665, COG0305	NA	NA
UHGV-0158695_62	PHROG	phrog_21026	NA	unknown function
UHGV-0158695_63	eggNOG-mapper	397290.C810_05184	NA	NA
UHGV-0158695_63	Structural annotation	PF18597	NA	NA
UHGV-0158695_64	eggNOG-mapper	665950.HMPREF1025_02540	NA	NA
UHGV-0158695_65	PHROG	phrog_8684	NA	unknown function
UHGV-0158695_65	UniRef90	UniRef90_A0A416ZXS5	YopX domain-containing protein	NA
UHGV-0158695_65	eggNOG-mapper	742733.HMPREF9469_00912	YopX protein	NA
UHGV-0158695_65	Pfam	PF09643	YopX protein	YopX
UHGV-0158695_65	NCBIFam	TIGR01671.1	phage conserved hypothetical protein TIGR01671	NA
UHGV-0158695_65	Structural annotation	PF09643, TIGR01671	NA	NA
UHGV-0158695_70	PHROG	phrog_874	NA	unknown function
UHGV-0158695_70	eggNOG-mapper	411468.CLOSCI_00298	NA	NA
UHGV-0158695_70	Structural annotation	PF04266, MF_00684, NF003443, COG4405	NA	NA
UHGV-0158695_72	eggNOG-mapper	478749.BRYFOR_07594	NA	NA
UHGV-0158695_73	eggNOG-mapper	397290.C810_01505	NA	NA
UHGV-0158695_74	PHROG	phrog_3458	NA	unknown function
UHGV-0158695_77	UniRef90	UniRef90_UPI000E420503	DNA cytosine methyltransferase	NA
UHGV-0158695_77	eggNOG-mapper	397290.C810_05213	C-5 cytosine-specific DNA methylase	NA
UHGV-0158695_77	Pfam	PF00145	C-5 cytosine-specific DNA methylase	DNA_methylase
UHGV-0158695_77	COG	COG0270	DNA-cytosine methylase	NA
UHGV-0158695_78	KOfam	K00558	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	NA
UHGV-0158695_78	PHROG	phrog_116	DNA methyltransferase	other
UHGV-0158695_78	UniRef90	UniRef90_A0A8D9UIR1	Cytosine specific methyltransferase	NA
UHGV-0158695_78	eggNOG-mapper	397290.C810_05213	C-5 cytosine-specific DNA methylase	NA
UHGV-0158695_78	PADLOC	MTase_II_00174	Type II methyltransferase	RM
UHGV-0158695_78	Pfam	PF00145	C-5 cytosine-specific DNA methylase	DNA_methylase
UHGV-0158695_78	COG	COG0270	DNA-cytosine methylase	NA
UHGV-0158695_78	Structural annotation	PF00145	NA	NA
UHGV-0158695_79	PHROG	phrog_17284	NA	unknown function
UHGV-0158695_79	UniRef90	UniRef90_A0A412KFA2	DNA (cytosine-5-)-methyltransferase	NA
UHGV-0158695_79	eggNOG-mapper	1121115.AXVN01000007_gene3542	C-5 cytosine-specific DNA methylase	NA
UHGV-0158695_79	PADLOC	oMTase_00023	orphan methyltransferase	RM
UHGV-0158695_79	Pfam	PF00145	C-5 cytosine-specific DNA methylase	DNA_methylase
UHGV-0158695_79	COG	COG0270	DNA-cytosine methylase	NA
UHGV-0158695_80	UniRef90	UniRef90_A0A173RE24	Bacterial regulatory proteins, luxR family	NA
UHGV-0158695_80	Pfam	PF00196	Bacterial regulatory proteins, luxR family	GerE
UHGV-0158695_80	Structural annotation	PF00196, MF_00245, NF001067, COG2771	NA	NA
UHGV-0158695_81	KOfam	K14059	int; integrase	NA
UHGV-0158695_81	PHROG	phrog_1	integrase	integration and excision
UHGV-0158695_81	UniRef90	UniRef90_A0A173REA3	Site-specific tyrosine recombinase XerD	NA
UHGV-0158695_81	eggNOG-mapper	397291.C804_00897	Phage integrase family	NA
UHGV-0158695_81	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0158695_81	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0158695_81	Structural annotation	PF00589, PF02920, MF_02055, TIGR02224, COG4974	NA	NA