UHGV-0158702

Genome information

vOTU vOTU-019592

Genome length 29,517 bps

CDS count 45

Completeness 84.43% (medium-quality)

geNomad score 0.9808

Prediction confidence Confident

Genome information
Genome ID	UHGV-0158702
vOTU ID	vOTU-019592
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_467535
BioSample	NA
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	84.43% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	14
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9808
Virus hallmark genes (geNomad)	14
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	28.4
Jumbo phage	No

Genome content
Genome length	29,517 bps
GC content	50.09%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	45
CDS density	91.83%
Average CDS length	608.80 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0158702_1	KOfam	K01448	amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0158702_1	PHROG	phrog_435	endolysin	lysis
UHGV-0158702_1	UniRef90	UniRef90_R8W911	MurNAc-LAA domain-containing protein	NA
UHGV-0158702_1	eggNOG-mapper	1203606.HMPREF1526_00962	Ami_3	NA
UHGV-0158702_1	Pfam	PF01520	N-acetylmuramoyl-L-alanine amidase	Amidase_3
UHGV-0158702_1	COG	COG0860	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0158702_1	Structural annotation	PF01520, MF_00562, TIGR02883, COG0860	NA	NA
UHGV-0158702_3	PHROG	phrog_297	holin	lysis
UHGV-0158702_3	UniRef90	UniRef90_A0A417HAK5	Phage holin	NA
UHGV-0158702_3	eggNOG-mapper	1408437.JNJN01000039_gene392	COG COG5546 Small integral membrane protein	NA
UHGV-0158702_3	Pfam	PF04531	Bacteriophage holin	Phage_holin_1
UHGV-0158702_3	NCBIFam	TIGR01598.1	phage holin	NA
UHGV-0158702_3	COG	COG5546	NA	NA
UHGV-0158702_3	Structural annotation	COG5546	NA	NA
UHGV-0158702_4	PHROG	phrog_23092	NA	unknown function
UHGV-0158702_4	eggNOG-mapper	1226322.HMPREF1545_02799	NA	NA
UHGV-0158702_5	PHROG	phrog_1863	NA	unknown function
UHGV-0158702_5	eggNOG-mapper	552398.HMPREF0866_01158	NA	NA
UHGV-0158702_6	KOfam	K18843	hicB; antitoxin HicB	NA
UHGV-0158702_6	PHROG	phrog_497	toxin-antitoxin system HicB-like	moron, auxiliary metabolic gene and host takeover
UHGV-0158702_6	UniRef90	UniRef90_R5D6Y4	HicB-like domain-containing protein	NA
UHGV-0158702_6	eggNOG-mapper	1122925.KB895394_gene1703	HicB_like antitoxin of bacterial toxin-antitoxin system	NA
UHGV-0158702_6	Pfam	PF15919	HicB_like antitoxin of bacterial toxin-antitoxin system	HicB_lk_antitox
UHGV-0158702_6	COG	COG1598	Antitoxin component HicB of the HicAB toxin-antitoxin system	NA
UHGV-0158702_6	Structural annotation	PF15919, COG1598	NA	NA
UHGV-0158702_7	Structural annotation	PF09826, MF_03001, TIGR04528, COG2706	NA	NA
UHGV-0158702_8	UniRef90	UniRef90_A0A096B066	Mtd_N domain-containing protein	NA
UHGV-0158702_9	eggNOG-mapper	1226322.HMPREF1545_00062	NA	NA
UHGV-0158702_9	Structural annotation	PF00354	NA	NA
UHGV-0158702_10	PHROG	phrog_13879	NA	unknown function
UHGV-0158702_10	eggNOG-mapper	1235797.C816_02659	NA	NA
UHGV-0158702_10	Structural annotation	PF14594, PF06588, NF033848, COG4379, COG5156	NA	NA
UHGV-0158702_11	eggNOG-mapper	1235797.C816_02660	NA	NA
UHGV-0158702_11	Structural annotation	PF20458, TIGR02126, COG3499	NA	NA
UHGV-0158702_12	PHROG	phrog_23464	NA	unknown function
UHGV-0158702_12	UniRef90	UniRef90_UPI000C8555F7	phage tail protein	NA
UHGV-0158702_12	eggNOG-mapper	33035.JPJF01000023_gene3232	phage tail tape measure protein	NA
UHGV-0158702_12	COG	COG5412	Phage-related protein	NA
UHGV-0158702_12	Structural annotation	PF20155, COG5280	NA	NA
UHGV-0158702_13	eggNOG-mapper	1403948.Q618_VCMC00001G0226	NA	NA
UHGV-0158702_13	Structural annotation	PF11836	NA	NA
UHGV-0158702_14	PHROG	phrog_88	major tail protein	tail
UHGV-0158702_14	UniRef90	UniRef90_UPI0018771F27	phage tail protein	NA
UHGV-0158702_14	eggNOG-mapper	33035.JPJF01000039_gene278	NA	NA
UHGV-0158702_14	NCBIFam	TIGR01603.1	major tail protein	NA
UHGV-0158702_14	Structural annotation	PF04630, TIGR01603, COG3498	NA	NA
UHGV-0158702_15	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0158702_15	UniRef90	UniRef90_R6UNR2	HK97 gp10 family phage protein	NA
UHGV-0158702_15	eggNOG-mapper	908340.HMPREF9406_2573	NA	NA
UHGV-0158702_15	Structural annotation	TIGR01725	NA	NA
UHGV-0158702_16	eggNOG-mapper	1232446.BAIE02000002_gene829	NA	NA
UHGV-0158702_16	Structural annotation	PF05657, COG3167	NA	NA
UHGV-0158702_17	PHROG	phrog_19734	NA	unknown function
UHGV-0158702_17	UniRef90	UniRef90_A0A316NL63	Head-tail adaptor protein	NA
UHGV-0158702_17	eggNOG-mapper	908340.HMPREF9406_2575	NA	NA
UHGV-0158702_17	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0158702_18	PHROG	phrog_2550	NA	unknown function
UHGV-0158702_18	UniRef90	UniRef90_R5V091	Phage related protein	NA
UHGV-0158702_18	eggNOG-mapper	1226322.HMPREF1545_00117	NA	NA
UHGV-0158702_18	Structural annotation	PF05135, TIGR01560	NA	NA
UHGV-0158702_19	PHROG	phrog_10	major head protein	head and packaging
UHGV-0158702_19	UniRef90	UniRef90_U2R3I5	Phage capsid family protein	NA
UHGV-0158702_19	eggNOG-mapper	1226322.HMPREF1545_00116	phage major capsid protein, HK97 family	NA
UHGV-0158702_19	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0158702_19	Pfam	PF12733	Cadherin-like beta sandwich domain	Cadherin-like
UHGV-0158702_19	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0158702_19	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0158702_19	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0158702_20	KOfam	K06904	NA	NA
UHGV-0158702_20	PHROG	phrog_80	head maturation protease	head and packaging
UHGV-0158702_20	UniRef90	UniRef90_A0A1F2PDD9	Caudovirus prohead protease	NA
UHGV-0158702_20	eggNOG-mapper	398512.JQKC01000009_gene450	Phage prohead protease, HK97 family	NA
UHGV-0158702_20	Pfam	PF04586	Caudovirus prohead serine protease	Peptidase_S78
UHGV-0158702_20	NCBIFam	TIGR01543.1	HK97 family phage prohead protease	NA
UHGV-0158702_20	COG	COG3740	Phage head maturation protease	NA
UHGV-0158702_20	Structural annotation	PF04586, TIGR01543, COG3740	NA	NA
UHGV-0158702_21	PHROG	phrog_12	portal protein	head and packaging
UHGV-0158702_21	UniRef90	UniRef90_U2SKC6	Phage portal protein, HK97 family	NA
UHGV-0158702_21	eggNOG-mapper	1226322.HMPREF1545_00114	Phage portal protein, HK97 family	NA
UHGV-0158702_21	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0158702_21	NCBIFam	TIGR01537.1	phage portal protein	NA
UHGV-0158702_21	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0158702_21	Structural annotation	PF04860, MF_04120, TIGR01537, COG4695	NA	NA
UHGV-0158702_22	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0158702_22	UniRef90	UniRef90_A0A316NLJ1	Terminase	NA
UHGV-0158702_22	eggNOG-mapper	1226322.HMPREF1545_00113	Phage Terminase	NA
UHGV-0158702_22	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0158702_22	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0158702_22	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0158702_22	Structural annotation	PF20441, PF03354, MF_04013, TIGR01547, COG4626	NA	NA
UHGV-0158702_23	PHROG	phrog_361	terminase small subunit	head and packaging
UHGV-0158702_23	UniRef90	UniRef90_A0A1C6H6I9	Phage terminase, small subunit	NA
UHGV-0158702_23	eggNOG-mapper	1145276.T479_19995	Phage terminase, small subunit	NA
UHGV-0158702_23	Pfam	PF05119	Phage terminase, small subunit	Terminase_4
UHGV-0158702_23	COG	COG3747	Phage terminase, small subunit	NA
UHGV-0158702_23	Structural annotation	PF05119, TIGR01558, COG3747	NA	NA
UHGV-0158702_24	PHROG	phrog_119	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0158702_24	UniRef90	UniRef90_A0A353J4P7	HNH endonuclease	NA
UHGV-0158702_24	eggNOG-mapper	642492.Clole_0739	HNH nucleases	NA
UHGV-0158702_24	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0158702_24	Structural annotation	TIGR02646	NA	NA
UHGV-0158702_25	Structural annotation	PF09274, NF041284, COG4877	NA	NA
UHGV-0158702_27	PHROG	phrog_1485	NA	unknown function
UHGV-0158702_27	UniRef90	UniRef90_UPI00189AA6A6	NA	NA
UHGV-0158702_27	eggNOG-mapper	1415774.U728_1099	NA	NA
UHGV-0158702_27	Pfam	PF07659	Nucleotide modification associated domain 1	DUF1599
UHGV-0158702_29	Structural annotation	NF011227	NA	NA
UHGV-0158702_31	PHROG	phrog_10714	NA	unknown function
UHGV-0158702_31	eggNOG-mapper	1226322.HMPREF1545_00023	NA	NA
UHGV-0158702_32	eggNOG-mapper	1232449.BAHV02000018_gene1537	NA	NA
UHGV-0158702_33	UniRef90	UniRef90_UPI0012AC12CD	Lar family restriction alleviation protein	NA
UHGV-0158702_33	eggNOG-mapper	742738.HMPREF9460_04054	Restriction alleviation protein Lar	NA
UHGV-0158702_33	Pfam	PF14354	Restriction alleviation protein Lar	Lar_restr_allev
UHGV-0158702_33	Structural annotation	PF14354, TIGR03655	NA	NA
UHGV-0158702_35	KOfam	K01160	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	NA
UHGV-0158702_35	PHROG	phrog_140	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0158702_35	UniRef90	UniRef90_A0A2Z4WAX1	RusA family crossover junction endodeoxyribonuclease	NA
UHGV-0158702_35	eggNOG-mapper	1123263.AUKY01000072_gene2102	Endodeoxyribonuclease RusA	NA
UHGV-0158702_35	Pfam	PF05866	Endodeoxyribonuclease RusA	RusA
UHGV-0158702_35	COG	COG4570	Holliday junction resolvase RusA (prophage-encoded endonuclease)	NA
UHGV-0158702_35	Structural annotation	PF05866, NF007305, COG4570	NA	NA
UHGV-0158702_37	KOfam	K17680	PEO1; twinkle protein [EC:5.6.2.3]	NA
UHGV-0158702_37	PHROG	phrog_239	DNA primase/helicase	DNA, RNA and nucleotide metabolism
UHGV-0158702_37	UniRef90	UniRef90_A0A1C5N602	DNA repair protein RadA	NA
UHGV-0158702_37	eggNOG-mapper	1378168.N510_01441	NA	NA
UHGV-0158702_37	Pfam	PF03796	DnaB-like helicase C terminal domain	DnaB_C
UHGV-0158702_37	COG	COG0305	Replicative DNA helicase	NA
UHGV-0158702_37	Structural annotation	PF03796, MF_04154, NF006606, COG0467	NA	NA
UHGV-0158702_38	eggNOG-mapper	796940.HMPREF9628_00167	NA	NA
UHGV-0158702_38	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0158702_38	Structural annotation	PF01978, MF_01819, TIGR01610, COG5625	NA	NA
UHGV-0158702_39	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0158702_39	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0158702_39	UniRef90	UniRef90_A0A3A8YRX9	Single-stranded DNA-binding protein	NA
UHGV-0158702_39	eggNOG-mapper	1378168.N510_01674	Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism	NA
UHGV-0158702_39	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0158702_39	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0158702_39	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0158702_39	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0158702_39	Structural annotation	PF00436, MF_00984, NF005241, COG0629	NA	NA
UHGV-0158702_40	PHROG	phrog_7566	NA	unknown function
UHGV-0158702_40	eggNOG-mapper	693746.OBV_25470	NA	NA
UHGV-0158702_41	PHROG	phrog_72	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
UHGV-0158702_41	UniRef90	UniRef90_A0A2Z4Q9W9	NinB	NA
UHGV-0158702_41	eggNOG-mapper	1507.HMPREF0262_00432	NA	NA
UHGV-0158702_42	PHROG	phrog_155	Erf-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0158702_42	UniRef90	UniRef90_A0A1C6J8G0	ERF superfamily	NA
UHGV-0158702_42	eggNOG-mapper	1268072.PSAB_05935	ERF superfamily	NA
UHGV-0158702_42	Pfam	PF04404	ERF superfamily	ERF
UHGV-0158702_42	Structural annotation	PF04404, COG4712	NA	NA