UHGV-0158708

Genome information

Genome length 44,245 bps

CDS count 61

Completeness 59.93% (medium-quality)

geNomad score 0.9794

Prediction confidence Confident

Genome information
Genome ID	UHGV-0158708
vOTU ID	vOTU-027866
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_484958
BioSample	NA
Country	Netherlands
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	59.93% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	8
CheckV host markers	3
Recoded stop codon	No

Viral signal
geNomad score	0.9794
Virus hallmark genes (geNomad)	6
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	21.41
Jumbo phage	No

Genome content
Genome length	44,245 bps
GC content	41.37%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	61
CDS density	91.73%
Average CDS length	666.49 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0158708_2	PHROG	phrog_19415	NA	unknown function
UHGV-0158708_2	eggNOG-mapper	762984.HMPREF9445_00153	DnaD domain protein	NA
UHGV-0158708_2	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0158708_2	Structural annotation	PF07120, COG3756	NA	NA
UHGV-0158708_3	KOfam	K02315	dnaC; DNA replication protein DnaC	NA
UHGV-0158708_3	PHROG	phrog_50	DnaC-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0158708_3	UniRef90	UniRef90_A0A6A7UPD3	Bac_DnaA domain-containing protein	NA
UHGV-0158708_3	eggNOG-mapper	449673.BACSTE_02207	IstB-like ATP binding protein	NA
UHGV-0158708_3	Pfam	PF00308	Bacterial dnaA protein	Bac_DnaA
UHGV-0158708_3	COG	COG1484	DNA replication protein DnaC	NA
UHGV-0158708_3	Structural annotation	PF01695, NF005931, COG1484	NA	NA
UHGV-0158708_4	KOfam	K02314	dnaB; replicative DNA helicase [EC:5.6.2.3]	NA
UHGV-0158708_4	PHROG	phrog_19	DnaB-like replicative helicase	DNA, RNA and nucleotide metabolism
UHGV-0158708_4	UniRef90	UniRef90_A0A6A7VTE7	DNA helicase	NA
UHGV-0158708_4	eggNOG-mapper	742766.HMPREF9455_01845	Participates in initiation and elongation during chromosome replication	NA
UHGV-0158708_4	Pfam	PF00772	DnaB-like helicase N terminal domain	DnaB
UHGV-0158708_4	Pfam	PF03796	DnaB-like helicase C terminal domain	DnaB_C
UHGV-0158708_4	COG	COG0305	Replicative DNA helicase	NA
UHGV-0158708_4	Structural annotation	PF03796, PF00772, MF_04155, TIGR00665, COG0305	NA	NA
UHGV-0158708_6	PHROG	phrog_18340	NA	unknown function
UHGV-0158708_6	UniRef90	UniRef90_A0A6A7VWV1	NA	NA
UHGV-0158708_6	eggNOG-mapper	445970.ALIPUT_02575	NA	NA
UHGV-0158708_6	Pfam	PF12957	NA	DUF3846
UHGV-0158708_6	Structural annotation	PF12957	NA	NA
UHGV-0158708_8	KOfam	K18951	gp30; DNA ligase [EC:6.5.1.1]	NA
UHGV-0158708_8	PHROG	phrog_114	ATP-dependent DNA ligase	DNA, RNA and nucleotide metabolism
UHGV-0158708_8	UniRef90	UniRef90_A0A1G2ICJ1	Protein RecA	NA
UHGV-0158708_8	eggNOG-mapper	1469607.KK073768_gene3458	TIGRFAM uracil-DNA glycosylase, family 4	NA
UHGV-0158708_8	Pfam	PF14890	Intein splicing domain	Intein_splicing
UHGV-0158708_8	Pfam	PF01068	ATP dependent DNA ligase domain	DNA_ligase_A_M
UHGV-0158708_8	NCBIFam	TIGR01445.1	intein N-terminal splicing region	NA
UHGV-0158708_8	COG	COG1372	Intein/homing endonuclease	NA
UHGV-0158708_11	UniRef90	UniRef90_A0A6A7UVT1	ANT domain-containing protein	NA
UHGV-0158708_11	eggNOG-mapper	1121100.JCM6294_587	BRO family, N-terminal domain	NA
UHGV-0158708_11	Pfam	PF03374	Phage antirepressor protein KilAC domain	ANT
UHGV-0158708_11	COG	COG3617	Prophage antirepressor	NA
UHGV-0158708_11	Structural annotation	COG3645	NA	NA
UHGV-0158708_12	PHROG	phrog_7625	head morphogenesis	head and packaging
UHGV-0158708_12	UniRef90	UniRef90_UPI000D0F347D	ADP-ribosyltransferase domain-containing protein	NA
UHGV-0158708_12	eggNOG-mapper	411901.BACCAC_01148	NA	NA
UHGV-0158708_12	Structural annotation	PF06152	NA	NA
UHGV-0158708_13	PHROG	phrog_64	portal protein	head and packaging
UHGV-0158708_13	UniRef90	UniRef90_A0A6A7USY4	Phage portal protein	NA
UHGV-0158708_13	eggNOG-mapper	411901.BACCAC_01152	Phage portal protein, SPP1 Gp6-like	NA
UHGV-0158708_13	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0158708_13	Structural annotation	PF05133, MF_04120, TIGR01538, COG5511	NA	NA
UHGV-0158708_19	Structural annotation	PF08838	NA	NA
UHGV-0158708_22	Structural annotation	PF18195, COG5475	NA	NA
UHGV-0158708_27	Structural annotation	PF19716	NA	NA
UHGV-0158708_30	UniRef90	UniRef90_A0A353E7E9	Fructan hydrolase	NA
UHGV-0158708_30	eggNOG-mapper	484018.BACPLE_02623	NA	NA
UHGV-0158708_31	PHROG	phrog_8684	NA	unknown function
UHGV-0158708_31	UniRef90	UniRef90_A0A3R5XXW3	YopX domain-containing protein	NA
UHGV-0158708_31	eggNOG-mapper	742735.HMPREF9467_00920	YopX protein	NA
UHGV-0158708_31	Pfam	PF09643	YopX protein	YopX
UHGV-0158708_31	Structural annotation	PF09643, TIGR01671	NA	NA
UHGV-0158708_36	PHROG	phrog_625	NA	unknown function
UHGV-0158708_36	UniRef90	UniRef90_A0A6I1RWR8	ASCH domain-containing protein	NA
UHGV-0158708_36	eggNOG-mapper	926549.KI421517_gene2497	NA	NA
UHGV-0158708_36	Structural annotation	PF12961	NA	NA
UHGV-0158708_40	PHROG	phrog_323	endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0158708_40	Pfam	PF08279	HTH domain	HTH_11
UHGV-0158708_40	Structural annotation	PF13936, PF13613, NF040595	NA	NA
UHGV-0158708_41	KOfam	K01243	mtnN, mtn, pfs; adenosylhomocysteine nucleosidase [EC:3.2.2.9]	NA
UHGV-0158708_41	UniRef90	UniRef90_A0A6A7UPN3	Adenosylhomocysteine nucleosidase	NA
UHGV-0158708_41	eggNOG-mapper	575590.HMPREF0156_01075	Catalyzes the irreversible cleavage of the glycosidic bond in both 5'-methylthioadenosine (MTA) and S- adenosylhomocysteine (SAH AdoHcy) to adenine and the corresponding thioribose, 5'-methylthioribose and S-ribosylhomocysteine, respectively	NA
UHGV-0158708_41	Pfam	PF01048	Phosphorylase superfamily	PNP_UDP_1
UHGV-0158708_41	NCBIFam	TIGR01704.1	5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase	NA
UHGV-0158708_41	COG	COG0775	Nucleoside phosphorylase/nucleosidase, includes 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase MtnN and futalosine hydrolase MqnB	NA
UHGV-0158708_41	Structural annotation	PF01048, MF_01684, NF004079, COG0775	NA	NA
UHGV-0158708_42	KOfam	K07173	luxS; S-ribosylhomocysteine lyase [EC:4.4.1.21]	NA
UHGV-0158708_42	UniRef90	UniRef90_A0A6A7USL4	S-ribosylhomocysteine lyase	NA
UHGV-0158708_42	eggNOG-mapper	1280681.AUJZ01000016_gene2177	Involved in the synthesis of autoinducer 2 (AI-2) which is secreted by bacteria and is used to communicate both the cell density and the metabolic potential of the environment. The regulation of gene expression in response to changes in cell density is called quorum sensing. Catalyzes the transformation of S-ribosylhomocysteine (RHC) to homocysteine (HC) and 4,5- dihydroxy-2,3-pentadione (DPD)	NA
UHGV-0158708_42	Pfam	PF02664	S-Ribosylhomocysteinase (LuxS)	LuxS
UHGV-0158708_42	NCBIFam	NF002604.0	S-ribosylhomocysteine lyase	NA
UHGV-0158708_42	COG	COG1854	S-ribosylhomocysteine lyase LuxS, autoinducer biosynthesis	NA
UHGV-0158708_42	Structural annotation	PF02664, MF_00091, NF002604, COG1854	NA	NA
UHGV-0158708_43	PHROG	phrog_5824	NA	unknown function
UHGV-0158708_44	PHROG	phrog_38330	NA	unknown function
UHGV-0158708_44	eggNOG-mapper	411901.BACCAC_01144	NA	NA
UHGV-0158708_44	Structural annotation	PF02924	NA	NA
UHGV-0158708_45	PHROG	phrog_29	major head protein	head and packaging
UHGV-0158708_45	UniRef90	UniRef90_UPI000D0FF18B	major capsid protein	NA
UHGV-0158708_45	eggNOG-mapper	411901.BACCAC_01143	Phage major capsid protein E	NA
UHGV-0158708_45	Pfam	PF03864	Phage major capsid protein E	Phage_cap_E
UHGV-0158708_45	Structural annotation	PF03864, MF_04133, TIGR04387, COG4834	NA	NA
UHGV-0158708_46	eggNOG-mapper	411901.BACCAC_01142	NA	NA
UHGV-0158708_46	Structural annotation	PF20449	NA	NA
UHGV-0158708_47	eggNOG-mapper	411901.BACCAC_01141	NA	NA
UHGV-0158708_47	Structural annotation	PF19586, TIGR01563, COG5614	NA	NA
UHGV-0158708_48	PHROG	phrog_5377	NA	unknown function
UHGV-0158708_48	UniRef90	UniRef90_UPI001897E37F	HK97 gp10 family phage protein	NA
UHGV-0158708_48	eggNOG-mapper	679189.HMPREF9019_0962	NA	NA
UHGV-0158708_49	PHROG	phrog_5597	NA	unknown function
UHGV-0158708_49	eggNOG-mapper	886379.AEWI01000001_gene1733	NA	NA
UHGV-0158708_49	Structural annotation	PF05657	NA	NA
UHGV-0158708_50	PHROG	phrog_17745	NA	unknown function
UHGV-0158708_50	eggNOG-mapper	679189.HMPREF9019_0963	NA	NA
UHGV-0158708_50	Structural annotation	PF06199, TIGR01603, COG5437	NA	NA
UHGV-0158708_51	PHROG	phrog_11996	NA	unknown function
UHGV-0158708_51	eggNOG-mapper	679189.HMPREF9019_0964	NA	NA
UHGV-0158708_51	Structural annotation	PF06894	NA	NA
UHGV-0158708_52	KOfam	K20478	GOLGB1; golgin subfamily B member 1	NA
UHGV-0158708_52	PHROG	phrog_14295	NA	unknown function
UHGV-0158708_52	UniRef90	UniRef90_UPI001C452B56	tape measure protein	NA
UHGV-0158708_52	eggNOG-mapper	679189.HMPREF9019_0965	NA	NA
UHGV-0158708_52	Pfam	PF20155	Tape measure protein	TMP_3
UHGV-0158708_52	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-0158708_52	Structural annotation	PF20155, TIGR01760, COG3941	NA	NA
UHGV-0158708_53	PHROG	phrog_6305	tail protein	tail
UHGV-0158708_53	eggNOG-mapper	411901.BACCAC_01133	NA	NA
UHGV-0158708_53	Structural annotation	PF05709, TIGR01633, COG4722	NA	NA
UHGV-0158708_54	PHROG	phrog_17422	NA	unknown function
UHGV-0158708_54	UniRef90	UniRef90_UPI001CCFC21D	collagen-like protein	NA
UHGV-0158708_54	eggNOG-mapper	357276.EL88_11220	Phage minor structural protein	NA
UHGV-0158708_54	COG	COG4926	Phage-related protein	NA
UHGV-0158708_54	Structural annotation	PF14594, TIGR01665, COG4379	NA	NA
UHGV-0158708_55	KOfam	K03646	tolA; colicin import membrane protein	NA
UHGV-0158708_55	PHROG	phrog_23208	virion structural protein	head and packaging
UHGV-0158708_55	Structural annotation	PF10794, PF20942, PF13620, NF040788, COG2351	NA	NA
UHGV-0158708_56	Structural annotation	PF05635, NF033474	NA	NA
UHGV-0158708_57	KOfam	K00986	ltrA; RNA-directed DNA polymerase [EC:2.7.7.49]	NA
UHGV-0158708_57	PHROG	phrog_1423	Reverse transcriptase	DNA, RNA and nucleotide metabolism
UHGV-0158708_57	UniRef90	UniRef90_UPI001C2C8EC1	RNA-directed DNA polymerase	NA
UHGV-0158708_57	eggNOG-mapper	411479.BACUNI_00629	COG COG3344 Retron-type reverse transcriptase	NA
UHGV-0158708_57	PADLOC	icity0040	RT (reverse transcriptase)	CRISPR-CAS
UHGV-0158708_57	Pfam	PF00078	Reverse transcriptase (RNA-dependent DNA polymerase)	RVT_1
UHGV-0158708_57	COG	COG3344	Retron-type reverse transcriptase	NA
UHGV-0158708_57	Structural annotation	PF00078, MF_04065, TIGR04416, COG3344	NA	NA
UHGV-0158708_58	UniRef90	UniRef90_UPI001C49131D	NA	NA
UHGV-0158708_58	eggNOG-mapper	411479.BACUNI_00733	NA	NA
UHGV-0158708_58	Pfam	PF14301	NA	DUF4376
UHGV-0158708_58	Structural annotation	PF14301	NA	NA
UHGV-0158708_59	UniRef90	UniRef90_A0A3R6C126	Glycosyl transferase	NA
UHGV-0158708_59	eggNOG-mapper	411479.BACUNI_00732	NA	NA
UHGV-0158708_59	Structural annotation	PF06197	NA	NA
UHGV-0158708_61	UniRef90	UniRef90_A0A3R5YJY4	DNA-binding protein	NA
UHGV-0158708_61	Pfam	PF12728	Helix-turn-helix domain	HTH_17
UHGV-0158708_61	Structural annotation	PF05930, NF033499, COG3311	NA	NA