UHGV-0158803

Genome information

Genome length 28,776 bps

CDS count 43

Completeness 100.00% (complete)

geNomad score 0.9748

Prediction confidence Confident

Genome information
Genome ID	UHGV-0158803
vOTU ID	vOTU-046264
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_461534
BioSample	SAMN05024037
Country	United States
Virus prediction confidence	Confident

Quality assessment
CheckV method	DTR
CheckV completeness	100.00% (complete)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	18
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9748
Virus hallmark genes (geNomad)	13
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	51.09
Jumbo phage	No

Genome content
Genome length	28,776 bps
GC content	32.82%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	43
CDS density	86.28%
Average CDS length	578.72 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0158803_2	Pfam	PF04545	Sigma-70, region 4	Sigma70_r4
UHGV-0158803_2	COG	COG1191	DNA-directed RNA polymerase specialized sigma subunit	NA
UHGV-0158803_6	KOfam	K03496	parA, soj; chromosome partitioning protein	NA
UHGV-0158803_6	PHROG	phrog_164	ParA-like partition protein	DNA, RNA and nucleotide metabolism
UHGV-0158803_6	UniRef90	UniRef90_A0A1J4VEV1	AAA_31 domain-containing protein	NA
UHGV-0158803_6	eggNOG-mapper	985867.AEWF01000012_gene1288	involved in chromosome partitioning	NA
UHGV-0158803_6	Pfam	PF13614	AAA domain	AAA_31
UHGV-0158803_6	COG	COG1192	ParA-like ATPase involved in chromosome/plasmid partitioning or cellulose biosynthesis protein BcsQ	NA
UHGV-0158803_6	Structural annotation	PF13614, MF_00533, TIGR03453, COG1192	NA	NA
UHGV-0158803_8	Structural annotation	PF06531	NA	NA
UHGV-0158803_9	KOfam	K01448	amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0158803_9	PHROG	phrog_435	endolysin	lysis
UHGV-0158803_9	UniRef90	UniRef90_A0A0J6WWA2	Cell wall hydrolase	NA
UHGV-0158803_9	eggNOG-mapper	1401067.HMPREF0872_07855	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0158803_9	Pfam	PF01520	N-acetylmuramoyl-L-alanine amidase	Amidase_3
UHGV-0158803_9	COG	COG0860	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0158803_9	Structural annotation	PF01520, MF_00562, TIGR02883, COG0860	NA	NA
UHGV-0158803_10	PHROG	phrog_27828	NA	unknown function
UHGV-0158803_10	UniRef90	UniRef90_F5KZP5	Conserved domain protein	NA
UHGV-0158803_10	eggNOG-mapper	546273.VEIDISOL_00738	NA	NA
UHGV-0158803_13	PHROG	phrog_22483	NA	unknown function
UHGV-0158803_13	UniRef90	UniRef90_UPI0011DD5599	lysyl-tRNA synthetase	NA
UHGV-0158803_14	PHROG	phrog_32779	NA	unknown function
UHGV-0158803_14	eggNOG-mapper	1128111.HMPREF0870_01752	NA	NA
UHGV-0158803_15	eggNOG-mapper	546273.VEIDISOL_01075	NA	NA
UHGV-0158803_15	Structural annotation	PF17813, NF038186	NA	NA
UHGV-0158803_16	PHROG	phrog_7037	tail fiber protein	tail
UHGV-0158803_16	UniRef90	UniRef90_UPI000E19FF75	phage tail protein	NA
UHGV-0158803_16	eggNOG-mapper	1449063.JMLS01000030_gene468	Phage tail-collar fibre protein	NA
UHGV-0158803_16	COG	COG5301	Phage-related tail fiber protein	NA
UHGV-0158803_16	Structural annotation	PF12571, COG5301	NA	NA
UHGV-0158803_17	PHROG	phrog_521	tail protein	tail
UHGV-0158803_17	UniRef90	UniRef90_UPI0018C84EFF	NA	NA
UHGV-0158803_17	eggNOG-mapper	883156.HMPREF9282_00966	NA	NA
UHGV-0158803_17	Pfam	PF10076	Bacteriophage Mu-like, Gp48	Phage_Mu_Gp48
UHGV-0158803_17	COG	COG3778	NA	NA
UHGV-0158803_17	Structural annotation	PF10076, COG3778	NA	NA
UHGV-0158803_18	PHROG	phrog_6	baseplate protein	tail
UHGV-0158803_18	UniRef90	UniRef90_A0A848ERW6	Baseplate J/gp47 family protein	NA
UHGV-0158803_18	eggNOG-mapper	568816.Acin_1328	Baseplate J-like protein	NA
UHGV-0158803_18	Pfam	PF04865	Baseplate J-like protein	Baseplate_J
UHGV-0158803_18	COG	COG3299	NA	NA
UHGV-0158803_18	Structural annotation	PF04865, PF21379, MF_04102, TIGR02243, COG3299	NA	NA
UHGV-0158803_19	PHROG	phrog_120	baseplate protein	tail
UHGV-0158803_19	UniRef90	UniRef90_A0A848EQ98	NA	NA
UHGV-0158803_19	eggNOG-mapper	568816.Acin_1329	NA	NA
UHGV-0158803_19	Pfam	PF10934	NA	DUF2634
UHGV-0158803_19	Structural annotation	PF10934, MF_02010, TIGR03357, COG3628	NA	NA
UHGV-0158803_20	PHROG	phrog_579	NA	unknown function
UHGV-0158803_20	UniRef90	UniRef90_UPI000DA5FB9A	NA	NA
UHGV-0158803_20	eggNOG-mapper	883156.HMPREF9282_00963	NA	NA
UHGV-0158803_20	Pfam	PF10844	NA	DUF2577
UHGV-0158803_20	Structural annotation	PF10844	NA	NA
UHGV-0158803_21	PHROG	phrog_400	tail protein	tail
UHGV-0158803_21	UniRef90	UniRef90_I0GWS1	Phage related protein	NA
UHGV-0158803_21	eggNOG-mapper	568816.Acin_1962	NLP P60 protein	NA
UHGV-0158803_21	COG	COG0791	Cell wall-associated hydrolase, NlpC_P60 family	NA
UHGV-0158803_21	Structural annotation	PF14594, NF033848, COG4379	NA	NA
UHGV-0158803_22	PHROG	phrog_5184	NA	unknown function
UHGV-0158803_22	UniRef90	UniRef90_A0A0L0W6M8	LysM domain-containing protein	NA
UHGV-0158803_22	eggNOG-mapper	1232428.CAVO010000003_gene1000	LysM domain	NA
UHGV-0158803_22	COG	COG1652	Cytoplasmic potassium-binding protein Kbp/XkdP/YgaU, contains LysM domain	NA
UHGV-0158803_23	PHROG	phrog_28	tail length tape measure protein	tail
UHGV-0158803_23	UniRef90	UniRef90_A0A8D4UU63	PhageMin_Tail domain-containing protein	NA
UHGV-0158803_23	eggNOG-mapper	1120985.AUMI01000018_gene2905	Phage-related minor tail protein	NA
UHGV-0158803_23	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-0158803_23	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-0158803_23	COG	COG5283	Phage-related tail protein	NA
UHGV-0158803_23	Structural annotation	PF10145, TIGR01760, COG5280	NA	NA
UHGV-0158803_24	PHROG	phrog_2722	NA	unknown function
UHGV-0158803_25	PHROG	phrog_389	tail protein XkdN-like	tail
UHGV-0158803_25	UniRef90	UniRef90_I0GWR7	Phage related protein	NA
UHGV-0158803_25	eggNOG-mapper	1291050.JAGE01000001_gene2929	Phage XkdN-like tail assembly chaperone protein, TAC	NA
UHGV-0158803_25	Pfam	PF08890	Phage XkdN-like tail assembly chaperone protein, TAC	Phage_TAC_5
UHGV-0158803_25	Structural annotation	PF08890	NA	NA
UHGV-0158803_26	PHROG	phrog_365	tail protein	tail
UHGV-0158803_26	UniRef90	UniRef90_UPI001EF6A2DF	phage tail tube protein	NA
UHGV-0158803_26	eggNOG-mapper	568816.Acin_1337	Phage tail tube protein	NA
UHGV-0158803_26	Pfam	PF09393	Phage tail tube protein	DUF2001
UHGV-0158803_26	Structural annotation	PF09393, TIGR02241, COG3498	NA	NA
UHGV-0158803_27	PHROG	phrog_1480	tail sheath	tail
UHGV-0158803_27	UniRef90	UniRef90_A0A848EQH3	Phage tail sheath protein	NA
UHGV-0158803_27	eggNOG-mapper	568816.Acin_1338	Phage tail sheath C-terminal domain	NA
UHGV-0158803_27	Pfam	PF04984	Phage tail sheath protein subtilisin-like domain	Phage_sheath_1
UHGV-0158803_27	Pfam	PF17482	Phage tail sheath C-terminal domain	Phage_sheath_1C
UHGV-0158803_27	Structural annotation	PF10758, COG3497	NA	NA
UHGV-0158803_28	PHROG	phrog_525	NA	unknown function
UHGV-0158803_28	Pfam	PF20765	NA	DUF6838
UHGV-0158803_28	Structural annotation	PF20765, TIGR01633, COG5003	NA	NA
UHGV-0158803_29	UniRef90	UniRef90_UPI0008EBDF4A	HK97 gp10 family phage protein	NA
UHGV-0158803_29	eggNOG-mapper	1211817.CCAT010000008_gene945	Bacteriophage HK97-gp10, putative tail-component	NA
UHGV-0158803_29	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-0158803_29	Structural annotation	PF17395, TIGR01725, COG5005	NA	NA
UHGV-0158803_30	PHROG	phrog_25	head closure Hc1	connector
UHGV-0158803_30	UniRef90	UniRef90_A0A5Q2MXP7	Head-tail adaptor protein	NA
UHGV-0158803_30	eggNOG-mapper	508419.F8J165_9CAUD	Phage head-tail joining protein	NA
UHGV-0158803_30	Pfam	PF05521	Phage head-tail joining protein	Phage_H_T_join
UHGV-0158803_30	NCBIFam	TIGR01563.1	phage head closure protein	NA
UHGV-0158803_31	PHROG	phrog_40	head-tail adaptor Ad1	connector
UHGV-0158803_31	UniRef90	UniRef90_UPI00195DB364	head-tail connector protein	NA
UHGV-0158803_31	eggNOG-mapper	1262449.CP6013_1043	Phage gp6-like head-tail connector protein	NA
UHGV-0158803_31	Pfam	PF05135	Phage gp6-like head-tail connector protein	Phage_connect_1
UHGV-0158803_31	NCBIFam	TIGR01560.2	head-tail connector protein	NA
UHGV-0158803_31	Structural annotation	PF05135, TIGR01560	NA	NA
UHGV-0158803_32	PHROG	phrog_10	major head protein	head and packaging
UHGV-0158803_32	UniRef90	UniRef90_UPI001D01823D	phage major capsid protein	NA
UHGV-0158803_32	eggNOG-mapper	1341151.ASZU01000004_gene260	Phage capsid family	NA
UHGV-0158803_32	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0158803_32	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0158803_32	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0158803_32	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0158803_33	KOfam	K06904	NA	NA
UHGV-0158803_33	PHROG	phrog_80	head maturation protease	head and packaging
UHGV-0158803_33	UniRef90	UniRef90_UPI00129DEC4A	HK97 family phage prohead protease	NA
UHGV-0158803_33	eggNOG-mapper	1235755.ANAM01000006_gene2374	Caudovirus prohead serine protease	NA
UHGV-0158803_33	Pfam	PF04586	Caudovirus prohead serine protease	Peptidase_S78
UHGV-0158803_33	NCBIFam	TIGR01543.1	HK97 family phage prohead protease	NA
UHGV-0158803_33	COG	COG3740	Phage head maturation protease	NA
UHGV-0158803_33	Structural annotation	PF04586, TIGR01543, COG3740	NA	NA
UHGV-0158803_34	PHROG	phrog_12	portal protein	head and packaging
UHGV-0158803_34	UniRef90	UniRef90_UPI0018C64799	phage portal protein	NA
UHGV-0158803_34	eggNOG-mapper	1094508.Tsac_2426	Portal protein	NA
UHGV-0158803_34	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0158803_34	NCBIFam	TIGR01537.1	phage portal protein	NA
UHGV-0158803_34	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0158803_34	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-0158803_36	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0158803_36	UniRef90	UniRef90_A0A412CHE2	Terminase large subunit	NA
UHGV-0158803_36	eggNOG-mapper	1382358.JHVN01000024_gene1704	Phage Terminase	NA
UHGV-0158803_36	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0158803_36	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0158803_36	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0158803_36	Structural annotation	PF20441, PF03354, MF_04145, TIGR01547, COG4626	NA	NA
UHGV-0158803_37	PHROG	phrog_1066	NA	unknown function
UHGV-0158803_37	eggNOG-mapper	1280689.AUJC01000011_gene1517	NA	NA
UHGV-0158803_37	Structural annotation	PF05119, TIGR01558	NA	NA
UHGV-0158803_41	PHROG	phrog_799	DNA methyltransferase	other
UHGV-0158803_41	UniRef90	UniRef90_A0A3Q9R5L1	Sugar-phospahte nucleotidyltransferase	NA
UHGV-0158803_41	eggNOG-mapper	883156.HMPREF9282_00530	NA	NA
UHGV-0158803_41	Structural annotation	PF13651, MF_00607, NF000077, COG0286	NA	NA
UHGV-0158803_42	KOfam	K07451	mcrA; 5-methylcytosine-specific restriction enzyme A [EC:3.1.21.-]	NA
UHGV-0158803_42	PHROG	phrog_119	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0158803_42	UniRef90	UniRef90_I0GWQ4	Prophage LambdaBa04 gp54 like protein	NA
UHGV-0158803_42	eggNOG-mapper	1414720.CBYM010000040_gene1642	HNH nucleases	NA
UHGV-0158803_42	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0158803_42	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA