UHGV-0158835

Genome information

Genome length 39,153 bps

CDS count 57

Completeness 100.00% (complete)

geNomad score 0.9769

Prediction confidence Confident

Genome information
Genome ID	UHGV-0158835
vOTU ID	vOTU-004528
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_452328
BioSample	SAMN05971430
Country	United States
Virus prediction confidence	Confident

Quality assessment
CheckV method	DTR
CheckV completeness	100.00% (complete)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	18
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9769
Virus hallmark genes (geNomad)	13
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	48.8
Jumbo phage	No

Genome content
Genome length	39,153 bps
GC content	42.92%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	57
CDS density	94.25%
Average CDS length	651.21 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0158835_1	PHROG	phrog_1272	tail length tape measure protein	tail
UHGV-0158835_1	UniRef90	UniRef90_A0A417PG60	Phage tail tape measure protein	NA
UHGV-0158835_1	eggNOG-mapper	1235799.C818_00430	Phage-related minor tail protein	NA
UHGV-0158835_1	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-0158835_1	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-0158835_1	COG	COG5283	Phage-related tail protein	NA
UHGV-0158835_2	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-0158835_2	UniRef90	UniRef90_A0A1M6MWV9	Phage tail protein	NA
UHGV-0158835_2	eggNOG-mapper	1235792.C808_00094	phage tail	NA
UHGV-0158835_2	COG	COG4722	Phage-related protein YomH	NA
UHGV-0158835_2	Structural annotation	PF05709, PF02408, TIGR01633, COG4722	NA	NA
UHGV-0158835_3	PHROG	phrog_9886	NA	unknown function
UHGV-0158835_3	UniRef90	UniRef90_A0A417PG56	Peptidase S74 domain-containing protein	NA
UHGV-0158835_3	eggNOG-mapper	1123075.AUDP01000020_gene1524	Prophage endopeptidase tail	NA
UHGV-0158835_3	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-0158835_3	COG	COG4926	Phage-related protein	NA
UHGV-0158835_3	Structural annotation	PF14594, TIGR01665, COG4926	NA	NA
UHGV-0158835_4	PHROG	phrog_18444	NA	unknown function
UHGV-0158835_4	UniRef90	UniRef90_UPI00156E9A45	peptide chain release factor 2	NA
UHGV-0158835_6	PHROG	phrog_28838	NA	unknown function
UHGV-0158835_6	eggNOG-mapper	1123075.AUDP01000020_gene1527	NA	NA
UHGV-0158835_7	PHROG	phrog_19280	NA	unknown function
UHGV-0158835_7	UniRef90	UniRef90_A0A413UF00	NA	NA
UHGV-0158835_7	eggNOG-mapper	1160721.RBI_I01569	NA	NA
UHGV-0158835_7	Pfam	PF19789	NA	DUF6273
UHGV-0158835_7	Structural annotation	PF19789	NA	NA
UHGV-0158835_8	PHROG	phrog_3206	Avd protein of DGR	DNA, RNA and nucleotide metabolism
UHGV-0158835_8	Structural annotation	PF05635, MF_04067, NF008911	NA	NA
UHGV-0158835_9	KOfam	K00986	ltrA; RNA-directed DNA polymerase [EC:2.7.7.49]	NA
UHGV-0158835_9	PHROG	phrog_1423	Reverse transcriptase	DNA, RNA and nucleotide metabolism
UHGV-0158835_9	UniRef90	UniRef90_A0A1C5PK20	Retron-type reverse transcriptase	NA
UHGV-0158835_9	eggNOG-mapper	1160721.RBI_I01568	Reverse transcriptase (RNA-dependent DNA polymerase)	NA
UHGV-0158835_9	PADLOC	icity0040	RT (reverse transcriptase)	CRISPR-CAS
UHGV-0158835_9	Pfam	PF00078	Reverse transcriptase (RNA-dependent DNA polymerase)	RVT_1
UHGV-0158835_9	COG	COG3344	Retron-type reverse transcriptase	NA
UHGV-0158835_9	Structural annotation	PF00078, MF_01390, TIGR04416, COG3344	NA	NA
UHGV-0158835_11	UniRef90	UniRef90_A0A413B196	NA	NA
UHGV-0158835_12	eggNOG-mapper	457412.RSAG_04673	NA	NA
UHGV-0158835_13	PHROG	phrog_937	hemolysin	other
UHGV-0158835_13	eggNOG-mapper	411459.RUMOBE_01081	NA	NA
UHGV-0158835_14	PHROG	phrog_443	holin	lysis
UHGV-0158835_14	UniRef90	UniRef90_UPI000E5CA950	holin	NA
UHGV-0158835_14	eggNOG-mapper	626523.GCWU000342_01012	Putative lactococcus lactis phage r1t holin	NA
UHGV-0158835_14	Pfam	PF16945	Putative lactococcus lactis phage r1t holin	Phage_r1t_holin
UHGV-0158835_14	Structural annotation	PF16945	NA	NA
UHGV-0158835_15	KOfam	K07273	acm; lysozyme	NA
UHGV-0158835_15	PHROG	phrog_6745	endolysin	lysis
UHGV-0158835_15	UniRef90	UniRef90_A0A417PG91	CHAP domain-containing protein	NA
UHGV-0158835_15	eggNOG-mapper	457412.RSAG_00790	CHAP domain	NA
UHGV-0158835_15	Pfam	PF01183	Glycosyl hydrolases family 25	Glyco_hydro_25
UHGV-0158835_15	Pfam	PF05257	CHAP domain	CHAP
UHGV-0158835_15	Pfam	PF01471	Putative peptidoglycan binding domain	PG_binding_1
UHGV-0158835_15	COG	COG3409	Peptidoglycan-binding (PGRP) domain of peptidoglycan hydrolases	NA
UHGV-0158835_15	Structural annotation	PF01183, TIGR02594, TIGR04303, COG3757, COG3942	NA	NA
UHGV-0158835_16	KOfam	K06400	spoIVCA; site-specific DNA recombinase	NA
UHGV-0158835_16	PHROG	phrog_95	integrase	integration and excision
UHGV-0158835_16	UniRef90	UniRef90_UPI001D0DC2F1	recombinase family protein	NA
UHGV-0158835_16	eggNOG-mapper	1123075.AUDP01000026_gene425	Resolvase, N terminal domain	NA
UHGV-0158835_16	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-0158835_16	Pfam	PF13408	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
UHGV-0158835_16	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-0158835_16	Structural annotation	PF00239, NF041201, COG1961	NA	NA
UHGV-0158835_17	eggNOG-mapper	1235800.C819_02268	NA	NA
UHGV-0158835_18	KOfam	K23779	sutR; XRE family transcriptional regulator, regulator of sulfur utilization	NA
UHGV-0158835_18	PHROG	phrog_3	transcriptional repressor	transcription regulation
UHGV-0158835_18	UniRef90	UniRef90_A0A412ELZ3	XRE family transcriptional regulator	NA
UHGV-0158835_18	eggNOG-mapper	411470.RUMGNA_00189	Cro/C1-type HTH DNA-binding domain	NA
UHGV-0158835_18	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0158835_18	Structural annotation	PF01381, NF041951, COG1396	NA	NA
UHGV-0158835_19	KOfam	K18830	pezA; HTH-type transcriptional regulator / antitoxin PezA	NA
UHGV-0158835_19	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0158835_19	UniRef90	UniRef90_A0A3R6WUA5	XRE family transcriptional regulator	NA
UHGV-0158835_19	eggNOG-mapper	411470.RUMGNA_00191	DNA-binding helix-turn-helix protein	NA
UHGV-0158835_19	Pfam	PF12844	Helix-turn-helix domain	HTH_19
UHGV-0158835_19	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0158835_19	Structural annotation	PF01381, MF_00535, NF007257, COG1476	NA	NA
UHGV-0158835_22	PHROG	phrog_59	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0158835_22	UniRef90	UniRef90_A0A417ANM8	NUMOD4 domain-containing protein	NA
UHGV-0158835_22	eggNOG-mapper	1410650.JHWL01000037_gene604	NA	NA
UHGV-0158835_22	PADLOC	HEase_00016	homing endonuclease	RM
UHGV-0158835_22	Pfam	PF07463	NUMOD4 motif	NUMOD4
UHGV-0158835_22	Pfam	PF13392	HNH endonuclease	HNH_3
UHGV-0158835_22	Structural annotation	PF07463, PF07453, TIGR01453	NA	NA
UHGV-0158835_23	eggNOG-mapper	1235792.C808_00637	NA	NA
UHGV-0158835_26	PHROG	phrog_3584	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0158835_26	eggNOG-mapper	1235792.C808_03084	NA	NA
UHGV-0158835_26	Structural annotation	PF01446	NA	NA
UHGV-0158835_27	UniRef90	UniRef90_A0A1C6IUE3	Ribonuclease H	NA
UHGV-0158835_27	eggNOG-mapper	411461.DORFOR_01140	RNA-DNA hybrid ribonuclease activity	NA
UHGV-0158835_27	COG	COG0328	Ribonuclease HI	NA
UHGV-0158835_27	Structural annotation	PF00075, MF_00042, NF001236, COG0328	NA	NA
UHGV-0158835_29	KOfam	K03496	parA, soj; chromosome partitioning protein	NA
UHGV-0158835_29	PHROG	phrog_164	ParA-like partition protein	DNA, RNA and nucleotide metabolism
UHGV-0158835_29	UniRef90	UniRef90_A0A417PG63	ParA family protein	NA
UHGV-0158835_29	eggNOG-mapper	97139.C824_00725	Cellulose biosynthesis protein BcsQ	NA
UHGV-0158835_29	Pfam	PF13614	AAA domain	AAA_31
UHGV-0158835_29	COG	COG1192	ParA-like ATPase involved in chromosome/plasmid partitioning or cellulose biosynthesis protein BcsQ	NA
UHGV-0158835_29	Structural annotation	PF13614, MF_00533, TIGR03453, COG1192	NA	NA
UHGV-0158835_30	KOfam	K03497	parB, spo0J; ParB family transcriptional regulator, chromosome partitioning protein	NA
UHGV-0158835_30	PHROG	phrog_15077	NA	unknown function
UHGV-0158835_30	UniRef90	UniRef90_A0A417ANM7	ParB domain-containing protein	NA
UHGV-0158835_30	eggNOG-mapper	1235792.C808_00610	ParB-like nuclease domain	NA
UHGV-0158835_30	Pfam	PF02195	ParB/Sulfiredoxin domain	ParBc
UHGV-0158835_30	COG	COG1475	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	NA
UHGV-0158835_30	Structural annotation	PF02195, MF_02015, TIGR04285, COG1475	NA	NA
UHGV-0158835_32	UniRef90	UniRef90_A0A1Q6JLU8	PH domain-containing protein	NA
UHGV-0158835_32	eggNOG-mapper	411470.RUMGNA_00212	NA	NA
UHGV-0158835_36	PHROG	phrog_3502	NA	unknown function
UHGV-0158835_36	UniRef90	UniRef90_A0A417ANR7	LexA_DNA_bind domain-containing protein	NA
UHGV-0158835_36	Pfam	PF01726	LexA DNA binding domain	LexA_DNA_bind
UHGV-0158835_36	COG	COG1974	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	NA
UHGV-0158835_36	Structural annotation	PF01726, MF_00732, TIGR00738, COG3388	NA	NA
UHGV-0158835_38	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0158835_38	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0158835_38	UniRef90	UniRef90_A0A417ANN0	Single-stranded DNA-binding protein	NA
UHGV-0158835_38	eggNOG-mapper	457412.RSAG_03244	Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism	NA
UHGV-0158835_38	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0158835_38	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0158835_38	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0158835_38	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0158835_38	Structural annotation	PF00436, MF_00984, NF005580, COG0629	NA	NA
UHGV-0158835_40	PHROG	phrog_7566	NA	unknown function
UHGV-0158835_40	eggNOG-mapper	411459.RUMOBE_00948	NA	NA
UHGV-0158835_41	PHROG	phrog_6072	NA	unknown function
UHGV-0158835_42	PHROG	phrog_11237	NA	unknown function
UHGV-0158835_42	eggNOG-mapper	1235798.C817_02584	NA	NA
UHGV-0158835_43	PHROG	phrog_1315	NA	unknown function
UHGV-0158835_44	PHROG	phrog_119	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0158835_44	UniRef90	UniRef90_A0A417PG49	NA	NA
UHGV-0158835_44	eggNOG-mapper	1235792.C808_00081	HNH nucleases	NA
UHGV-0158835_44	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0158835_44	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0158835_45	PHROG	phrog_5110	terminase small subunit	head and packaging
UHGV-0158835_45	UniRef90	UniRef90_A0A1M6MVK9	Phage terminase, small subunit	NA
UHGV-0158835_45	eggNOG-mapper	1235792.C808_00082	NA	NA
UHGV-0158835_45	Pfam	PF05119	Phage terminase, small subunit	Terminase_4
UHGV-0158835_45	Structural annotation	PF05119, TIGR01558, COG3747	NA	NA
UHGV-0158835_46	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0158835_46	UniRef90	UniRef90_A0A417PG72	Terminase large subunit	NA
UHGV-0158835_46	eggNOG-mapper	1235792.C808_00083	Phage terminase-like protein large subunit	NA
UHGV-0158835_46	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0158835_46	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0158835_46	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0158835_46	Structural annotation	PF20441, PF03354, MF_04146, TIGR01547, COG4626	NA	NA
UHGV-0158835_47	PHROG	phrog_12	portal protein	head and packaging
UHGV-0158835_47	UniRef90	UniRef90_A0A417PG64	Phage portal protein	NA
UHGV-0158835_47	eggNOG-mapper	1235792.C808_00084	Phage portal protein, HK97 family	NA
UHGV-0158835_47	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0158835_47	NCBIFam	TIGR01537.1	phage portal protein	NA
UHGV-0158835_47	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0158835_47	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-0158835_48	KOfam	K01358	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	NA
UHGV-0158835_48	PHROG	phrog_94	head maturation protease	head and packaging
UHGV-0158835_48	UniRef90	UniRef90_A0A417PG92	ATP-dependent Clp protease proteolytic subunit	NA
UHGV-0158835_48	eggNOG-mapper	1235792.C808_00085	Clp protease	NA
UHGV-0158835_48	Pfam	PF00574	Clp protease	CLP_protease
UHGV-0158835_48	COG	COG0740	ATP-dependent protease ClpP, protease subunit	NA
UHGV-0158835_48	Structural annotation	PF00574, MF_00444, NF011090, COG0740	NA	NA
UHGV-0158835_49	PHROG	phrog_10	major head protein	head and packaging
UHGV-0158835_49	UniRef90	UniRef90_A0A417PG62	Phage major capsid protein	NA
UHGV-0158835_49	eggNOG-mapper	1235792.C808_00086	Phage capsid family	NA
UHGV-0158835_49	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0158835_49	Pfam	PF12733	Cadherin-like beta sandwich domain	Cadherin-like
UHGV-0158835_49	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0158835_49	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0158835_49	Structural annotation	PF05065, PF12733, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0158835_50	PHROG	phrog_749	NA	unknown function
UHGV-0158835_50	eggNOG-mapper	1235792.C808_00087	NA	NA
UHGV-0158835_51	eggNOG-mapper	1235792.C808_00088	NA	NA
UHGV-0158835_51	Structural annotation	PF20536, TIGR01563	NA	NA
UHGV-0158835_52	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0158835_52	UniRef90	UniRef90_A0A417PG70	HK97 gp10 family phage protein	NA
UHGV-0158835_52	eggNOG-mapper	397287.C807_04036	Bacteriophage HK97-gp10, putative tail-component	NA
UHGV-0158835_52	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-0158835_52	Structural annotation	PF20039, TIGR01725, COG5005	NA	NA
UHGV-0158835_53	PHROG	phrog_78	tail terminator	connector
UHGV-0158835_53	eggNOG-mapper	610130.Closa_0748	NA	NA
UHGV-0158835_53	Structural annotation	PF20765	NA	NA
UHGV-0158835_54	PHROG	phrog_88	major tail protein	tail
UHGV-0158835_54	UniRef90	UniRef90_A0A417ANR0	Phage tail protein	NA
UHGV-0158835_54	eggNOG-mapper	610130.Closa_0749	phage major tail protein, phi13 family	NA
UHGV-0158835_54	NCBIFam	TIGR01603.1	major tail protein	NA
UHGV-0158835_54	Structural annotation	PF06488, TIGR01603, COG3498	NA	NA
UHGV-0158835_55	PHROG	phrog_709	NA	unknown function
UHGV-0158835_55	eggNOG-mapper	610130.Closa_0750	NA	NA
UHGV-0158835_55	Structural annotation	PF11836	NA	NA
UHGV-0158835_56	PHROG	phrog_3033	NA	unknown function
UHGV-0158835_56	UniRef90	UniRef90_A0A2X2UJ60	Phage-like protein	NA
UHGV-0158835_56	eggNOG-mapper	1235799.C818_01010	NA	NA
UHGV-0158835_57	PHROG	phrog_5755	tail length tape measure protein	tail
UHGV-0158835_57	UniRef90	UniRef90_A0A173WDC3	Phage-related minor tail protein	NA
UHGV-0158835_57	eggNOG-mapper	610130.Closa_0752	Phage tail tape measure protein, TP901 family	NA
UHGV-0158835_57	COG	COG5280	Phage-related minor tail protein	NA