UHGV-0159118

Genome information

Genome length 27,554 bps

CDS count 37

Completeness 65.59% (medium-quality)

geNomad score 0.9815

Prediction confidence Confident

Genome information
Genome ID	UHGV-0159118
vOTU ID	vOTU-027892
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_482006
BioSample	SAMN06115400
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	65.59% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	14
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9815
Virus hallmark genes (geNomad)	15
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	41.87
Jumbo phage	No

Genome content
Genome length	27,554 bps
GC content	58.47%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	37
CDS density	90.92%
Average CDS length	682.46 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0159118_1	PHROG	phrog_15982	NA	unknown function
UHGV-0159118_1	UniRef90	UniRef90_A0A3E2XXY6	ParB domain-containing protein	NA
UHGV-0159118_1	eggNOG-mapper	693746.OBV_19860	ParB-like nuclease domain	NA
UHGV-0159118_1	COG	COG1475	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	NA
UHGV-0159118_5	PHROG	phrog_3584	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0159118_5	eggNOG-mapper	1203606.HMPREF1526_00985	NA	NA
UHGV-0159118_5	Structural annotation	PF01446	NA	NA
UHGV-0159118_6	Structural annotation	PF15188	NA	NA
UHGV-0159118_7	KOfam	K03497	parB, spo0J; ParB family transcriptional regulator, chromosome partitioning protein	NA
UHGV-0159118_7	PHROG	phrog_498	DNA methyltransferase	other
UHGV-0159118_7	UniRef90	UniRef90_A0A417FVG7	ParB domain-containing protein	NA
UHGV-0159118_7	eggNOG-mapper	693746.OBV_19980	DNA methylase	NA
UHGV-0159118_7	PADLOC	MTase_II_00015	Type II methyltransferase	RM
UHGV-0159118_7	Pfam	PF02195	ParB/Sulfiredoxin domain	ParBc
UHGV-0159118_7	COG	COG0863	DNA modification methylase	NA
UHGV-0159118_8	KOfam	K00571	E2.1.1.72; site-specific DNA-methyltransferase (adenine-specific) [EC:2.1.1.72]	NA
UHGV-0159118_8	PHROG	phrog_498	DNA methyltransferase	other
UHGV-0159118_8	UniRef90	UniRef90_A0A415ZGK3	Methyltransferase	NA
UHGV-0159118_8	eggNOG-mapper	742823.HMPREF9465_00950	Belongs to the N(4) N(6)-methyltransferase family	NA
UHGV-0159118_8	PADLOC	MTase_II_00015	Type II methyltransferase	RM
UHGV-0159118_8	Pfam	PF01555	DNA methylase	N6_N4_Mtase
UHGV-0159118_8	COG	COG0863	DNA modification methylase	NA
UHGV-0159118_8	Structural annotation	PF01555, MF_01872, NF010253, COG0863	NA	NA
UHGV-0159118_9	PHROG	phrog_83	terminase small subunit	head and packaging
UHGV-0159118_9	UniRef90	UniRef90_A0A417TPF2	Phage terminase small subunit P27 family	NA
UHGV-0159118_9	eggNOG-mapper	1007096.BAGW01000012_gene2373	Phage terminase, small subunit	NA
UHGV-0159118_9	Pfam	PF05119	Phage terminase, small subunit	Terminase_4
UHGV-0159118_9	NCBIFam	TIGR01558.1	phage terminase small subunit P27 family	NA
UHGV-0159118_9	COG	COG3747	Phage terminase, small subunit	NA
UHGV-0159118_9	Structural annotation	PF05119, TIGR01558, COG3747	NA	NA
UHGV-0159118_10	PHROG	phrog_474	phosphofructokinase	other
UHGV-0159118_10	UniRef90	UniRef90_A0A3E2XXK5	NA	NA
UHGV-0159118_10	eggNOG-mapper	428125.CLOLEP_01367	NA	NA
UHGV-0159118_10	Pfam	PF19905	NA	DUF6378
UHGV-0159118_10	Structural annotation	PF19905	NA	NA
UHGV-0159118_14	PHROG	phrog_12	portal protein	head and packaging
UHGV-0159118_14	UniRef90	UniRef90_A0A3E2XWZ9	Phage portal protein	NA
UHGV-0159118_14	eggNOG-mapper	171693.BN988_01606	Phage portal protein	NA
UHGV-0159118_14	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0159118_14	NCBIFam	TIGR01537.1	phage portal protein	NA
UHGV-0159118_14	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0159118_14	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-0159118_15	PHROG	phrog_1480	tail sheath	tail
UHGV-0159118_15	UniRef90	UniRef90_A0A416DH06	Phage tail protein	NA
UHGV-0159118_15	eggNOG-mapper	290402.Cbei_0914	Phage tail sheath C-terminal domain	NA
UHGV-0159118_15	Pfam	PF17482	Phage tail sheath C-terminal domain	Phage_sheath_1C
UHGV-0159118_15	Structural annotation	PF10758, COG3497	NA	NA
UHGV-0159118_16	PHROG	phrog_10	major head protein	head and packaging
UHGV-0159118_16	UniRef90	UniRef90_A0A415ZGH3	Phage major capsid protein	NA
UHGV-0159118_16	eggNOG-mapper	1007103.AFHW01000142_gene1299	Phage capsid family	NA
UHGV-0159118_16	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0159118_16	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0159118_16	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0159118_16	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0159118_17	PHROG	phrog_365	tail protein	tail
UHGV-0159118_17	UniRef90	UniRef90_A0A3E2XWR4	Terminase	NA
UHGV-0159118_17	eggNOG-mapper	318464.IO99_13720	Phage tail tube protein	NA
UHGV-0159118_17	Pfam	PF09393	Phage tail tube protein	DUF2001
UHGV-0159118_17	Structural annotation	PF09393, TIGR02241, COG3498	NA	NA
UHGV-0159118_18	KOfam	K01358	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	NA
UHGV-0159118_18	PHROG	phrog_94	head maturation protease	head and packaging
UHGV-0159118_18	UniRef90	UniRef90_A0A416DH21	ATP-dependent Clp protease proteolytic subunit	NA
UHGV-0159118_18	eggNOG-mapper	1095750.HMPREF9970_2268	Belongs to the peptidase S14 family	NA
UHGV-0159118_18	Pfam	PF00574	Clp protease	CLP_protease
UHGV-0159118_18	COG	COG0740	ATP-dependent protease ClpP, protease subunit	NA
UHGV-0159118_18	Structural annotation	PF00574, MF_00444, NF011090, COG0740	NA	NA
UHGV-0159118_19	UniRef90	UniRef90_A0A3E2XWS7	Phage gp6-like head-tail connector protein	NA
UHGV-0159118_19	NCBIFam	TIGR01560.2	head-tail connector protein	NA
UHGV-0159118_19	Structural annotation	PF05135, TIGR01560	NA	NA
UHGV-0159118_20	UniRef90	UniRef90_A0A417F5D6	Head-tail adaptor protein	NA
UHGV-0159118_20	eggNOG-mapper	97138.C820_00612	Phage head-tail adaptor	NA
UHGV-0159118_20	Pfam	PF05521	Phage head-tail joining protein	Phage_H_T_join
UHGV-0159118_20	COG	COG5614	Phage head-tail adaptor	NA
UHGV-0159118_20	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0159118_21	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0159118_21	UniRef90	UniRef90_UPI00189BF3BE	HK97 gp10 family phage protein	NA
UHGV-0159118_21	eggNOG-mapper	394503.Ccel_2953	Bacteriophage HK97-gp10, putative tail-component	NA
UHGV-0159118_21	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-0159118_21	Structural annotation	PF17395, TIGR01725, COG5005	NA	NA
UHGV-0159118_22	Structural annotation	PF20765, TIGR01633, COG5003	NA	NA
UHGV-0159118_23	PHROG	phrog_4976	tail assembly chaperone	tail
UHGV-0159118_23	eggNOG-mapper	1203606.HMPREF1526_01346	NA	NA
UHGV-0159118_23	Structural annotation	PF08890, TIGR01674	NA	NA
UHGV-0159118_25	PHROG	phrog_23464	NA	unknown function
UHGV-0159118_25	eggNOG-mapper	665950.HMPREF1025_02660	phage tail tape measure protein	NA
UHGV-0159118_25	COG	COG5283	Phage-related tail protein	NA
UHGV-0159118_25	Structural annotation	PF20155, COG3941	NA	NA
UHGV-0159118_26	PHROG	phrog_23201	NA	unknown function
UHGV-0159118_26	UniRef90	UniRef90_UPI000F05162E	phage portal protein	NA
UHGV-0159118_26	eggNOG-mapper	1120998.AUFC01000013_gene2949	LysM domain	NA
UHGV-0159118_26	COG	COG1652	Cytoplasmic potassium-binding protein Kbp/XkdP/YgaU, contains LysM domain	NA
UHGV-0159118_26	Structural annotation	PF19266, TIGR02126, COG3499	NA	NA
UHGV-0159118_27	PHROG	phrog_400	tail protein	tail
UHGV-0159118_27	UniRef90	UniRef90_A0A3E2XWU2	CHAP domain-containing protein	NA
UHGV-0159118_27	eggNOG-mapper	500633.CLOHIR_00378	NLP P60 protein	NA
UHGV-0159118_27	Pfam	PF05257	CHAP domain	CHAP
UHGV-0159118_27	COG	COG0791	Cell wall-associated hydrolase, NlpC_P60 family	NA
UHGV-0159118_27	Structural annotation	PF14594, PF00877, MF_02071, NF033848, COG4379, COG0791, COG3584	NA	NA
UHGV-0159118_28	Structural annotation	PF10844, MF_00216, TIGR00523, COG0361	NA	NA
UHGV-0159118_29	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0159118_29	UniRef90	UniRef90_A0A3E2XXG2	Terminase large subunit	NA
UHGV-0159118_29	eggNOG-mapper	1007096.BAGW01000012_gene2374	Phage Terminase	NA
UHGV-0159118_29	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0159118_29	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0159118_29	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0159118_29	Structural annotation	PF20441, PF03354, MF_04145, TIGR01547, COG4626	NA	NA
UHGV-0159118_30	UniRef90	UniRef90_A0A3E2XWS6	NA	NA
UHGV-0159118_30	eggNOG-mapper	318464.IO99_13685	NA	NA
UHGV-0159118_30	Pfam	PF10934	NA	DUF2634
UHGV-0159118_30	COG	COG3628	Phage baseplate assembly protein W	NA
UHGV-0159118_30	Structural annotation	PF10934, MF_02010, NF010728, COG4381	NA	NA
UHGV-0159118_31	PHROG	phrog_6	baseplate protein	tail
UHGV-0159118_31	UniRef90	UniRef90_A0A415ZGA0	Baseplate J protein	NA
UHGV-0159118_31	eggNOG-mapper	1203606.HMPREF1526_01353	Baseplate J-like protein	NA
UHGV-0159118_31	Pfam	PF04865	Baseplate J-like protein	Baseplate_J
UHGV-0159118_31	COG	COG3299	NA	NA
UHGV-0159118_31	Structural annotation	PF04865, PF21379, MF_04102, TIGR02243, COG3299	NA	NA
UHGV-0159118_32	PHROG	phrog_521	tail protein	tail
UHGV-0159118_32	UniRef90	UniRef90_A0A415ZGE0	NA	NA
UHGV-0159118_32	eggNOG-mapper	1120998.AUFC01000013_gene2954	NA	NA
UHGV-0159118_32	Pfam	PF10076	Bacteriophage Mu-like, Gp48	Phage_Mu_Gp48
UHGV-0159118_32	COG	COG3778	NA	NA
UHGV-0159118_32	Structural annotation	PF10076, TIGR02242, COG3778	NA	NA
UHGV-0159118_33	PHROG	phrog_5302	tail protein	tail
UHGV-0159118_33	UniRef90	UniRef90_A0A417HW08	Collagen-like protein	NA
UHGV-0159118_33	eggNOG-mapper	1203606.HMPREF1526_00261	cellulose 1,4-beta-cellobiosidase activity	NA
UHGV-0159118_33	COG	COG5301	Phage-related tail fiber protein	NA
UHGV-0159118_33	Structural annotation	PF20545, TIGR03000, TIGR03525, COG1262, COG4704	NA	NA
UHGV-0159118_34	UniRef90	UniRef90_A0A1Y4RWY1	NA	NA
UHGV-0159118_34	eggNOG-mapper	657322.FPR_21910	NA	NA
UHGV-0159118_34	Structural annotation	PF14301	NA	NA
UHGV-0159118_35	PHROG	phrog_20274	NA	unknown function
UHGV-0159118_35	UniRef90	UniRef90_A0A1C6BH15	Predicted membrane protein	NA
UHGV-0159118_35	eggNOG-mapper	1243664.CAVL020000021_gene3234	Putative ABC-transporter type IV	NA
UHGV-0159118_35	Pfam	PF06541	Putative ABC-transporter type IV	ABC_trans_CmpB
UHGV-0159118_35	COG	COG4905	NA	NA
UHGV-0159118_35	Structural annotation	PF06541, COG4905	NA	NA
UHGV-0159118_36	PHROG	phrog_199	holin	lysis
UHGV-0159118_36	UniRef90	UniRef90_A0A417BZX9	Holin	NA
UHGV-0159118_36	eggNOG-mapper	1121344.JHZO01000003_gene684	toxin secretion phage lysis holin	NA
UHGV-0159118_36	Pfam	PF05105	Bacteriophage holin family	Phage_holin_4_1
UHGV-0159118_36	NCBIFam	TIGR01593.1	toxin secretion/phage lysis holin	NA
UHGV-0159118_36	COG	COG4824	Phage-related holin (Lysis protein)	NA
UHGV-0159118_36	Structural annotation	PF05105, TIGR01593, COG4824	NA	NA
UHGV-0159118_37	KOfam	K01447	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0159118_37	PHROG	phrog_670	endolysin	lysis
UHGV-0159118_37	UniRef90	UniRef90_A0A396Q5L1	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0159118_37	eggNOG-mapper	1120998.AUFC01000016_gene8	Ami_2	NA
UHGV-0159118_37	Pfam	PF01510	N-acetylmuramoyl-L-alanine amidase	Amidase_2
UHGV-0159118_37	COG	COG5632	N-acetylmuramoyl-L-alanine amidase CwlA	NA
UHGV-0159118_37	Structural annotation	PF01510, MF_04111, NF008758, COG5632	NA	NA