UHGV-0159146

Genome information

Genome length 19,503 bps

CDS count 35

Completeness 55.60% (medium-quality)

geNomad score 0.9765

Prediction confidence Confident

Genome information
Genome ID	UHGV-0159146
vOTU ID	vOTU-022184
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_447856
BioSample	NA
Country	United States
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	55.60% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	7
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9765
Virus hallmark genes (geNomad)	2
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	15.29
Jumbo phage	No

Genome content
Genome length	19,503 bps
GC content	41.23%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	35
CDS density	89.53%
Average CDS length	507.94 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0159146_1	COG	COG4675	Phage tail collar domain	NA
UHGV-0159146_2	PHROG	phrog_14030	NA	unknown function
UHGV-0159146_2	UniRef90	UniRef90_UPI0018999D57	phage tail tip lysozyme	NA
UHGV-0159146_2	eggNOG-mapper	33035.JPJF01000093_gene2240	NlpC/P60 family	NA
UHGV-0159146_2	Pfam	PF18013	Phage tail lysozyme	Phage_lysozyme2
UHGV-0159146_2	Pfam	PF00877	NlpC/P60 family	NLPC_P60
UHGV-0159146_2	COG	COG0791	Cell wall-associated hydrolase, NlpC_P60 family	NA
UHGV-0159146_2	Structural annotation	PF18013, PF05382, NF033742, COG0791	NA	NA
UHGV-0159146_3	PHROG	phrog_13289	tail protein	tail
UHGV-0159146_3	UniRef90	UniRef90_UPI001570BE36	phage tail protein	NA
UHGV-0159146_3	eggNOG-mapper	1235798.C817_02568	Prophage endopeptidase tail	NA
UHGV-0159146_3	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-0159146_3	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-0159146_3	COG	COG2885	Outer membrane protein OmpA and related peptidoglycan-associated (lipo)proteins	NA
UHGV-0159146_3	Structural annotation	PF14594, TIGR01665, COG4926	NA	NA
UHGV-0159146_4	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-0159146_4	UniRef90	UniRef90_UPI001570C170	phage tail protein	NA
UHGV-0159146_4	eggNOG-mapper	1235798.C817_02569	tail component	NA
UHGV-0159146_4	COG	COG4722	Phage-related protein YomH	NA
UHGV-0159146_4	Structural annotation	PF20195, TIGR01633, COG4722	NA	NA
UHGV-0159146_5	COG	COG5280	Phage-related minor tail protein	NA
UHGV-0159146_6	PHROG	phrog_6568	NA	unknown function
UHGV-0159146_6	eggNOG-mapper	1203606.HMPREF1526_00241	NA	NA
UHGV-0159146_7	PHROG	phrog_15198	NA	unknown function
UHGV-0159146_7	UniRef90	UniRef90_A0A174HIL1	NA	NA
UHGV-0159146_8	PHROG	phrog_8684	NA	unknown function
UHGV-0159146_8	UniRef90	UniRef90_UPI00156FED61	YopX family protein	NA
UHGV-0159146_8	eggNOG-mapper	476272.RUMHYD_03337	NA	NA
UHGV-0159146_8	Pfam	PF09643	YopX protein	YopX
UHGV-0159146_8	Structural annotation	PF09643, TIGR01671	NA	NA
UHGV-0159146_10	PHROG	phrog_20593	NA	unknown function
UHGV-0159146_10	Structural annotation	PF07870, TIGR02501	NA	NA
UHGV-0159146_11	PHROG	phrog_10714	NA	unknown function
UHGV-0159146_12	PHROG	phrog_15198	NA	unknown function
UHGV-0159146_12	UniRef90	UniRef90_UPI0015708581	NA	NA
UHGV-0159146_12	eggNOG-mapper	658655.HMPREF0988_00863	NA	NA
UHGV-0159146_12	Pfam	PF04448	NA	DUF551
UHGV-0159146_13	PHROG	phrog_15198	NA	unknown function
UHGV-0159146_13	UniRef90	UniRef90_UPI00156F8460	NA	NA
UHGV-0159146_13	eggNOG-mapper	411461.DORFOR_01155	NA	NA
UHGV-0159146_13	Pfam	PF04448	NA	DUF551
UHGV-0159146_17	Structural annotation	PF17516, NF037951	NA	NA
UHGV-0159146_18	UniRef90	UniRef90_UPI000E4AEE34	NA	NA
UHGV-0159146_18	eggNOG-mapper	411460.RUMTOR_01556	NA	NA
UHGV-0159146_18	Pfam	PF14199	NA	DUF4317
UHGV-0159146_18	Structural annotation	PF14199, MF_00730, NF001557, COG3081	NA	NA
UHGV-0159146_19	PHROG	phrog_7566	NA	unknown function
UHGV-0159146_19	eggNOG-mapper	665950.HMPREF1025_02547	NA	NA
UHGV-0159146_21	KOfam	K03497	parB, spo0J; ParB family transcriptional regulator, chromosome partitioning protein	NA
UHGV-0159146_21	PHROG	phrog_6218	ParB-like partition protein	DNA, RNA and nucleotide metabolism
UHGV-0159146_21	UniRef90	UniRef90_A0A174HNH0	Probable chromosome-partitioning protein parB	NA
UHGV-0159146_21	eggNOG-mapper	411461.DORFOR_01144	Belongs to the ParB family	NA
UHGV-0159146_21	Pfam	PF02195	ParB/Sulfiredoxin domain	ParBc
UHGV-0159146_21	NCBIFam	TIGR00180.1	ParB/RepB/Spo0J family partition protein	NA
UHGV-0159146_21	COG	COG1475	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	NA
UHGV-0159146_21	Structural annotation	PF02195, PF18579, MF_02015, TIGR00180, COG1475	NA	NA
UHGV-0159146_22	KOfam	K03469	rnhA, RNASEH1; ribonuclease HI [EC:3.1.26.4]	NA
UHGV-0159146_22	PHROG	phrog_531	Rnase H	DNA, RNA and nucleotide metabolism
UHGV-0159146_22	UniRef90	UniRef90_A0A174L2W3	Ribonuclease H	NA
UHGV-0159146_22	eggNOG-mapper	1235792.C808_03083	RNase H	NA
UHGV-0159146_22	Pfam	PF00075	RNase H	RNase_H
UHGV-0159146_22	COG	COG0328	Ribonuclease HI	NA
UHGV-0159146_23	PHROG	phrog_3584	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0159146_23	eggNOG-mapper	33035.JPJF01000138_gene3005	NA	NA
UHGV-0159146_23	Structural annotation	PF01446	NA	NA
UHGV-0159146_24	PHROG	phrog_3777	NA	unknown function
UHGV-0159146_24	UniRef90	UniRef90_A0A3E4GMR6	NA	NA
UHGV-0159146_24	eggNOG-mapper	411460.RUMTOR_02064	NA	NA
UHGV-0159146_24	Pfam	PF12957	NA	DUF3846
UHGV-0159146_24	Structural annotation	PF12957	NA	NA
UHGV-0159146_28	PHROG	phrog_9607	NA	unknown function
UHGV-0159146_28	eggNOG-mapper	1304866.K413DRAFT_4639	NA	NA
UHGV-0159146_28	Structural annotation	PF02883, MF_00791, NF012200, COG3354	NA	NA
UHGV-0159146_30	PHROG	phrog_14088	NA	unknown function
UHGV-0159146_30	UniRef90	UniRef90_A0A3R6M7R7	Carboxypeptidase	NA
UHGV-0159146_30	eggNOG-mapper	1256908.HMPREF0373_00648	NA	NA
UHGV-0159146_32	KOfam	K18830	pezA; HTH-type transcriptional regulator / antitoxin PezA	NA
UHGV-0159146_32	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0159146_32	UniRef90	UniRef90_UPI00156F4263	helix-turn-helix domain-containing protein	NA
UHGV-0159146_32	eggNOG-mapper	411461.DORFOR_01130	Helix-turn-helix XRE-family like proteins	NA
UHGV-0159146_32	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0159146_32	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0159146_32	Structural annotation	PF01381, MF_00535, NF007257, COG1476	NA	NA
UHGV-0159146_33	KOfam	K10716	kch, trkA, mthK, pch; voltage-gated potassium channel	NA
UHGV-0159146_33	PHROG	phrog_7872	NA	unknown function
UHGV-0159146_33	UniRef90	UniRef90_D4M567	Ion channel	NA
UHGV-0159146_33	eggNOG-mapper	411459.RUMOBE_00964	Ion channel	NA
UHGV-0159146_33	Pfam	PF07885	Ion channel	Ion_trans_2
UHGV-0159146_33	COG	COG1226	Voltage-gated potassium channel Kch	NA
UHGV-0159146_33	Structural annotation	PF07885, NF040645	NA	NA
UHGV-0159146_34	PHROG	phrog_10934	NA	unknown function
UHGV-0159146_34	UniRef90	UniRef90_UPI0002E62F87	HIRAN domain-containing protein	NA
UHGV-0159146_34	eggNOG-mapper	1140001.I571_01804	NA	NA
UHGV-0159146_35	KOfam	K06400	spoIVCA; site-specific DNA recombinase	NA
UHGV-0159146_35	PHROG	phrog_95	integrase	integration and excision
UHGV-0159146_35	UniRef90	UniRef90_A0A173Z7C9	Resolvase, N terminal domain	NA
UHGV-0159146_35	eggNOG-mapper	411462.DORLON_00823	Resolvase, N terminal domain	NA
UHGV-0159146_35	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-0159146_35	Pfam	PF07508	Recombinase	Recombinase
UHGV-0159146_35	Pfam	PF13408	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
UHGV-0159146_35	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-0159146_35	Structural annotation	PF00239, PF07508, PF13408, NF041201, COG1961	NA	NA