UHGV-0159171

Genome information

Genome length 35,068 bps

CDS count 51

Completeness 85.81% (medium-quality)

geNomad score 0.9528

Prediction confidence Confident

Genome information
Genome ID	UHGV-0159171
vOTU ID	vOTU-027894
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_462290
BioSample	SAMN06112090
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	85.81% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	19
CheckV host markers	2
Recoded stop codon	No

Viral signal
geNomad score	0.9528
Virus hallmark genes (geNomad)	14
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	37.6
Jumbo phage	No

Genome content
Genome length	35,068 bps
GC content	60.21%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	51
CDS density	91.63%
Average CDS length	637.47 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0159171_1	eggNOG-mapper	1203554.HMPREF1476_01333	ATPases associated with a variety of cellular activities	NA
UHGV-0159171_1	Pfam	PF08402	TOBE domain	TOBE_2
UHGV-0159171_1	COG	COG3842	ABC-type Fe3+/spermidine/putrescine transport systems, ATPase component	NA
UHGV-0159171_2	KOfam	K07496	K07496; putative transposase	NA
UHGV-0159171_2	PHROG	phrog_506	transposase	integration and excision
UHGV-0159171_2	UniRef90	UniRef90_A0A1N6CXT1	Transposase	NA
UHGV-0159171_2	eggNOG-mapper	243159.AFE_1305	TIGRFAM Transposase, IS605 OrfB, C-terminal	NA
UHGV-0159171_2	Pfam	PF07282	Putative transposase DNA-binding domain	OrfB_Zn_ribbon
UHGV-0159171_2	NCBIFam	TIGR01766.2	IS200/IS605 family accessory protein TnpB-related protein	NA
UHGV-0159171_2	COG	COG0675	Transposase	NA
UHGV-0159171_3	KOfam	K07450	K07450; putative resolvase	NA
UHGV-0159171_3	PHROG	phrog_6620	transposase	integration and excision
UHGV-0159171_3	UniRef90	UniRef90_UPI001904E5E7	IS607 family transposase	NA
UHGV-0159171_3	eggNOG-mapper	765914.ThisiDRAFT_0477	HTH transcriptional regulator, MerR	NA
UHGV-0159171_3	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-0159171_3	NCBIFam	NF033518.0	IS607 family transposase	NA
UHGV-0159171_3	COG	COG2452	Predicted site-specific integrase-resolvase	NA
UHGV-0159171_4	KOfam	K01533	copB; P-type Cu2+ transporter [EC:7.2.2.9]	NA
UHGV-0159171_4	PHROG	phrog_12316	ATPase	other
UHGV-0159171_4	UniRef90	UniRef90_UPI00195F2F37	cation-translocating P-type ATPase	NA
UHGV-0159171_4	eggNOG-mapper	1121406.JAEX01000001_gene373	heavy metal translocating P-type ATPase	NA
UHGV-0159171_4	Pfam	PF00122	E1-E2 ATPase	E1-E2_ATPase
UHGV-0159171_4	Pfam	PF00702	haloacid dehalogenase-like hydrolase	Hydrolase
UHGV-0159171_4	NCBIFam	TIGR01525.1	heavy metal translocating P-type ATPase	NA
UHGV-0159171_4	COG	COG2217	Cation-transporting P-type ATPase	NA
UHGV-0159171_5	KOfam	K21600	csoR, ricR; CsoR family transcriptional regulator, copper-sensing transcriptional repressor	NA
UHGV-0159171_5	PHROG	phrog_6180	NA	unknown function
UHGV-0159171_5	UniRef90	UniRef90_A0A1Y3T0R3	Metal-sensitive transcriptional repressor	NA
UHGV-0159171_5	eggNOG-mapper	1304866.K413DRAFT_1038	Metal-sensitive transcriptional repressor	NA
UHGV-0159171_5	Pfam	PF02583	Metal-sensitive transcriptional repressor	Trns_repr_metal
UHGV-0159171_5	COG	COG1937	DNA-binding transcriptional regulator, FrmR family	NA
UHGV-0159171_7	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0159171_7	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0159171_7	UniRef90	UniRef90_A0A2E8K215	Single-stranded DNA-binding protein (Fragment)	NA
UHGV-0159171_7	eggNOG-mapper	667014.Thein_1686	Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism	NA
UHGV-0159171_7	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0159171_7	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0159171_7	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0159171_7	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0159171_7	Structural annotation	PF00436, MF_00984, NF005241, COG0629	NA	NA
UHGV-0159171_13	KOfam	K14060	pinR; putative DNA-invertase from lambdoid prophage Rac	NA
UHGV-0159171_13	PHROG	phrog_125	DNA invertase	DNA, RNA and nucleotide metabolism
UHGV-0159171_13	UniRef90	UniRef90_E7H2G4	Transposon Tn21 resolvase	NA
UHGV-0159171_13	eggNOG-mapper	742821.HMPREF9464_00902	Resolvase helix-turn-helix domain protein	NA
UHGV-0159171_13	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-0159171_13	Pfam	PF02796	Helix-turn-helix domain of resolvase	HTH_7
UHGV-0159171_13	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-0159171_13	Structural annotation	PF00239, PF02796, MF_00489, NF009949, COG1961	NA	NA
UHGV-0159171_19	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0159171_19	PHROG	phrog_4	transcriptional repressor	transcription regulation
UHGV-0159171_19	UniRef90	UniRef90_R7IJX0	HTH cro/C1-type domain-containing protein	NA
UHGV-0159171_19	eggNOG-mapper	742821.HMPREF9464_02173	Helix-turn-helix XRE-family like proteins	NA
UHGV-0159171_19	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0159171_19	Pfam	PF00717	Peptidase S24-like	Peptidase_S24
UHGV-0159171_19	COG	COG2932	Phage repressor protein C, contains Cro/C1-type HTH and peptisase s24 domains	NA
UHGV-0159171_19	Structural annotation	PF00717, PF01381, MF_00015, TIGR00498, COG2932	NA	NA
UHGV-0159171_20	PHROG	phrog_1032	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0159171_20	Pfam	PF13730	Helix-turn-helix domain	HTH_36
UHGV-0159171_20	COG	COG0640	DNA-binding transcriptional regulator, ArsR family	NA
UHGV-0159171_20	Structural annotation	PF07106, MF_01177, TIGR01610, COG5529	NA	NA
UHGV-0159171_21	KOfam	K02315	dnaC; DNA replication protein DnaC	NA
UHGV-0159171_21	PHROG	phrog_50	DnaC-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0159171_21	UniRef90	UniRef90_UPI0013F60B77	ATP-binding protein	NA
UHGV-0159171_21	eggNOG-mapper	742823.HMPREF9465_00892	DNA-dependent DNA replication	NA
UHGV-0159171_21	Pfam	PF01695	IstB-like ATP binding protein	IstB_IS21
UHGV-0159171_21	COG	COG1484	DNA replication protein DnaC	NA
UHGV-0159171_21	Structural annotation	PF01695, MF_01509, NF005304, COG1484	NA	NA
UHGV-0159171_23	PHROG	phrog_2245	nucleoside triphosphate pyrophosphohydrolase	other
UHGV-0159171_25	KOfam	K01160	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	NA
UHGV-0159171_25	PHROG	phrog_140	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0159171_25	UniRef90	UniRef90_A0A377R0I9	Holliday junction resolvase	NA
UHGV-0159171_25	eggNOG-mapper	742823.HMPREF9465_00230	Holliday junction resolvase	NA
UHGV-0159171_25	Pfam	PF05866	Endodeoxyribonuclease RusA	RusA
UHGV-0159171_25	COG	COG4570	Holliday junction resolvase RusA (prophage-encoded endonuclease)	NA
UHGV-0159171_25	Structural annotation	PF05866, NF007305, COG4570	NA	NA
UHGV-0159171_30	PHROG	phrog_3983	NA	unknown function
UHGV-0159171_30	eggNOG-mapper	1038869.AXAN01000006_gene953	NA	NA
UHGV-0159171_30	Structural annotation	COG1846	NA	NA
UHGV-0159171_31	PHROG	phrog_83	terminase small subunit	head and packaging
UHGV-0159171_31	UniRef90	UniRef90_UPI000DE972B2	phage terminase small subunit P27 family	NA
UHGV-0159171_31	eggNOG-mapper	380358.XALC_2399	Phage terminase, small subunit	NA
UHGV-0159171_31	Pfam	PF05119	Phage terminase, small subunit	Terminase_4
UHGV-0159171_31	NCBIFam	TIGR01558.1	phage terminase small subunit P27 family	NA
UHGV-0159171_31	COG	COG3747	Phage terminase, small subunit	NA
UHGV-0159171_31	Structural annotation	PF05119, TIGR01558, COG3747	NA	NA
UHGV-0159171_32	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0159171_32	UniRef90	UniRef90_A0A6L6YGT4	Terminase large subunit	NA
UHGV-0159171_32	eggNOG-mapper	742821.HMPREF9464_01834	Terminase	NA
UHGV-0159171_32	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0159171_32	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0159171_32	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0159171_32	Structural annotation	PF20441, PF03354, MF_04145, TIGR01547, COG4626	NA	NA
UHGV-0159171_33	PHROG	phrog_12	portal protein	head and packaging
UHGV-0159171_33	UniRef90	UniRef90_A0A1H8GIP2	Phage portal protein, HK97 family	NA
UHGV-0159171_33	eggNOG-mapper	742821.HMPREF9464_01833	Phage portal protein	NA
UHGV-0159171_33	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0159171_33	NCBIFam	TIGR01537.1	phage portal protein	NA
UHGV-0159171_33	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0159171_33	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-0159171_34	KOfam	K06904	NA	NA
UHGV-0159171_34	PHROG	phrog_80	head maturation protease	head and packaging
UHGV-0159171_34	UniRef90	UniRef90_UPI000671688B	HK97 family phage prohead protease	NA
UHGV-0159171_34	eggNOG-mapper	1397284.AYMN01000081_gene2457	Prohead protease	NA
UHGV-0159171_34	Pfam	PF04586	Caudovirus prohead serine protease	Peptidase_S78
UHGV-0159171_34	NCBIFam	TIGR01543.1	HK97 family phage prohead protease	NA
UHGV-0159171_34	COG	COG3740	Phage head maturation protease	NA
UHGV-0159171_34	Structural annotation	PF04586, TIGR01543, COG3740	NA	NA
UHGV-0159171_35	PHROG	phrog_10	major head protein	head and packaging
UHGV-0159171_35	UniRef90	UniRef90_UPI000671041A	phage major capsid protein	NA
UHGV-0159171_35	eggNOG-mapper	742821.HMPREF9464_01831	Phage capsid family	NA
UHGV-0159171_35	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0159171_35	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0159171_35	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0159171_35	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0159171_36	PHROG	phrog_40	head-tail adaptor Ad1	connector
UHGV-0159171_36	UniRef90	UniRef90_UPI0006713445	head-tail connector protein	NA
UHGV-0159171_36	eggNOG-mapper	525309.HMPREF0494_0884	Phage gp6-like head-tail connector protein	NA
UHGV-0159171_36	Pfam	PF05135	Phage gp6-like head-tail connector protein	Phage_connect_1
UHGV-0159171_36	NCBIFam	TIGR01560.2	head-tail connector protein	NA
UHGV-0159171_36	Structural annotation	PF05135, TIGR01560	NA	NA
UHGV-0159171_37	PHROG	phrog_25	head closure Hc1	connector
UHGV-0159171_37	eggNOG-mapper	742821.HMPREF9464_01829	Phage head-tail joining protein	NA
UHGV-0159171_37	Pfam	PF05521	Phage head-tail joining protein	Phage_H_T_join
UHGV-0159171_37	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0159171_38	PHROG	phrog_879	tail completion or Neck1 protein	connector
UHGV-0159171_38	UniRef90	UniRef90_A0A1Y0FI51	Aminotransferase	NA
UHGV-0159171_38	eggNOG-mapper	279714.FuraDRAFT_0280	NA	NA
UHGV-0159171_38	Structural annotation	TIGR01725	NA	NA
UHGV-0159171_39	PHROG	phrog_209	portal protein	head and packaging
UHGV-0159171_39	UniRef90	UniRef90_Q1I698	Putative phage protein	NA
UHGV-0159171_39	eggNOG-mapper	29486.NJ56_17665	NA	NA
UHGV-0159171_39	Structural annotation	PF09646	NA	NA
UHGV-0159171_40	PHROG	phrog_165	tail sheath	tail
UHGV-0159171_40	UniRef90	UniRef90_A0A5B7ZKE4	Phage tail protein	NA
UHGV-0159171_40	eggNOG-mapper	742821.HMPREF9464_01827	tail sheath	NA
UHGV-0159171_40	Pfam	PF04984	Phage tail sheath protein subtilisin-like domain	Phage_sheath_1
UHGV-0159171_40	Pfam	PF17482	Phage tail sheath C-terminal domain	Phage_sheath_1C
UHGV-0159171_40	COG	COG4386	Mu-like prophage tail sheath protein gpL	NA
UHGV-0159171_40	Structural annotation	PF10758, COG4386	NA	NA
UHGV-0159171_41	PHROG	phrog_185	tail tube protein	tail
UHGV-0159171_41	UniRef90	UniRef90_A0A2A7UXU0	Phage tail protein	NA
UHGV-0159171_41	eggNOG-mapper	1524467.IV04_21470	Phage tail tube protein	NA
UHGV-0159171_41	Pfam	PF10618	Phage tail tube protein	Tail_tube
UHGV-0159171_41	Structural annotation	PF10618, TIGR02241, COG3498	NA	NA
UHGV-0159171_42	Pfam	PF10109	Phage tail assembly chaperone proteins, E, or 41 or 14	Phage_TAC_7
UHGV-0159171_44	PHROG	phrog_13338	NA	unknown function
UHGV-0159171_44	eggNOG-mapper	742821.HMPREF9464_01824	Phage-related minor tail protein	NA
UHGV-0159171_44	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-0159171_44	COG	COG5283	Phage-related tail protein	NA
UHGV-0159171_44	Structural annotation	PF10145, TIGR01760	NA	NA
UHGV-0159171_45	PHROG	phrog_184	DNA circularization	DNA, RNA and nucleotide metabolism
UHGV-0159171_45	UniRef90	UniRef90_E7H535	DNA_circ_N domain-containing protein	NA
UHGV-0159171_45	eggNOG-mapper	742821.HMPREF9464_01823	DNA circularisation protein N-terminus	NA
UHGV-0159171_45	Pfam	PF07157	DNA circularisation protein N-terminus	DNA_circ_N
UHGV-0159171_45	COG	COG4228	Mu-like prophage DNA circulation protein	NA
UHGV-0159171_45	Structural annotation	PF07157, TIGR01633, COG4228	NA	NA
UHGV-0159171_46	PHROG	phrog_177	tail protein	tail
UHGV-0159171_46	UniRef90	UniRef90_A0A2W4U8P8	Baseplate protein	NA
UHGV-0159171_46	eggNOG-mapper	1150626.PHAMO_340063	Mu-like prophage tail protein	NA
UHGV-0159171_46	Pfam	PF21683	Mu phage baseplate assembly protein GpP-like, N-terminal	GpP-like_1st
UHGV-0159171_46	COG	COG4379	Mu-like prophage tail protein gpP	NA
UHGV-0159171_46	Structural annotation	PF14594, NF033848, COG4379	NA	NA
UHGV-0159171_47	PHROG	phrog_28548	NA	unknown function
UHGV-0159171_47	UniRef90	UniRef90_E7H532	Prophage MuSo2	NA
UHGV-0159171_47	eggNOG-mapper	742821.HMPREF9464_01820	Bacteriophage Mu Gp45 protein	NA
UHGV-0159171_47	Pfam	PF06890	Bacteriophage Mu Gp45 spike protein	Phage_Mu_Gp45
UHGV-0159171_47	NCBIFam	TIGR01644.1	phage baseplate assembly protein V	NA
UHGV-0159171_47	COG	COG4384	NA	NA
UHGV-0159171_47	Structural annotation	PF06890, MF_00216, TIGR01644, COG4384	NA	NA
UHGV-0159171_48	PHROG	phrog_180	tail protein	tail
UHGV-0159171_48	UniRef90	UniRef90_UPI001A9577B3	phage GP46 family protein	NA
UHGV-0159171_48	eggNOG-mapper	570967.JMLV01000018_gene455	Phage protein GP46	NA
UHGV-0159171_48	Pfam	PF07409	NA	GP46
UHGV-0159171_48	COG	COG4381	NA	NA
UHGV-0159171_48	Structural annotation	PF07409, COG4381	NA	NA
UHGV-0159171_49	PHROG	phrog_6	baseplate protein	tail
UHGV-0159171_49	UniRef90	UniRef90_A0A5B7ZKF1	Baseplate J/gp47 family protein	NA
UHGV-0159171_49	eggNOG-mapper	742821.HMPREF9464_01817	Baseplate J family protein	NA
UHGV-0159171_49	Pfam	PF04865	Baseplate J-like protein	Baseplate_J
UHGV-0159171_49	COG	COG3299	NA	NA
UHGV-0159171_49	Structural annotation	PF04865, PF21379, MF_04102, TIGR02243, COG3299	NA	NA
UHGV-0159171_50	PHROG	phrog_203	tail protein	tail
UHGV-0159171_50	UniRef90	UniRef90_UPI000F60B3C5	NA	NA
UHGV-0159171_50	eggNOG-mapper	690850.Desaf_0707	NA	NA
UHGV-0159171_50	Pfam	PF10076	Bacteriophage Mu-like, Gp48	Phage_Mu_Gp48
UHGV-0159171_50	COG	COG3778	NA	NA
UHGV-0159171_50	Structural annotation	PF10076, COG3778	NA	NA
UHGV-0159171_51	PHROG	phrog_1858	tail fiber protein	tail
UHGV-0159171_51	UniRef90	UniRef90_A0A5B7ZM63	Tail fiber protein	NA
UHGV-0159171_51	eggNOG-mapper	665956.HMPREF1032_02700	PFAM Tail Collar domain protein	NA
UHGV-0159171_51	Pfam	PF07484	Phage Tail Collar Domain	Collar
UHGV-0159171_51	COG	COG4675	Phage tail collar domain	NA