UHGV-0159237

Genome information

Genome length 36,433 bps

CDS count 52

Completeness 74.00% (medium-quality)

geNomad score 0.9757

Prediction confidence Confident

Genome information
Genome ID	UHGV-0159237
vOTU ID	vOTU-027898
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_473999
BioSample	SAMN06111984
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	74.00% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	14
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9757
Virus hallmark genes (geNomad)	11
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	41.84
Jumbo phage	No

Genome content
Genome length	36,433 bps
GC content	49.54%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	52
CDS density	95.05%
Average CDS length	669.35 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0159237_1	KOfam	K06400	spoIVCA; site-specific DNA recombinase	NA
UHGV-0159237_1	PHROG	phrog_95	integrase	integration and excision
UHGV-0159237_1	UniRef90	UniRef90_M8E4S6	Integrase	NA
UHGV-0159237_1	eggNOG-mapper	1121472.AQWN01000009_gene379	Resolvase, N terminal domain	NA
UHGV-0159237_1	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-0159237_1	Pfam	PF07508	Recombinase	Recombinase
UHGV-0159237_1	Pfam	PF13408	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
UHGV-0159237_1	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-0159237_1	Structural annotation	PF00239, PF13408, PF14235, NF041201, COG1961, COG1579	NA	NA
UHGV-0159237_3	KOfam	K01356	lexA; repressor LexA [EC:3.4.21.88]	NA
UHGV-0159237_3	PHROG	phrog_4	transcriptional repressor	transcription regulation
UHGV-0159237_3	UniRef90	UniRef90_A0A1I2C4N4	Phage repressor protein C, contains Cro/C1-type HTH and peptisase s24 domains	NA
UHGV-0159237_3	eggNOG-mapper	1219626.HMPREF1639_05315	helix-turn-helix	NA
UHGV-0159237_3	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0159237_3	Pfam	PF00717	Peptidase S24-like	Peptidase_S24
UHGV-0159237_3	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0159237_3	Structural annotation	PF00717, PF01381, MF_00015, TIGR00498, COG2932	NA	NA
UHGV-0159237_4	UniRef90	UniRef90_B1BPN1	HTH cro/C1-type domain-containing protein	NA
UHGV-0159237_4	eggNOG-mapper	768726.HMPREF9178_1089	NA	NA
UHGV-0159237_4	Pfam	PF05339	NA	DUF739
UHGV-0159237_4	COG	COG3655	DNA-binding transcriptional regulator, XRE family	NA
UHGV-0159237_4	Structural annotation	PF05339, NF002773, COG1476	NA	NA
UHGV-0159237_8	eggNOG-mapper	936375.HMPREF1152_0660	NA	NA
UHGV-0159237_9	UniRef90	UniRef90_R6XZA3	LysM domain protein	NA
UHGV-0159237_9	Structural annotation	MF_02014, NF010723	NA	NA
UHGV-0159237_10	PHROG	phrog_3777	NA	unknown function
UHGV-0159237_10	UniRef90	UniRef90_A0A416ZBN6	NA	NA
UHGV-0159237_10	eggNOG-mapper	1321782.HMPREF1986_00149	Antirestriction protein (ArdA)	NA
UHGV-0159237_10	Pfam	PF12957	NA	DUF3846
UHGV-0159237_10	COG	COG4734	Antirestriction protein ArdA	NA
UHGV-0159237_11	KOfam	K19171	dndD; DNA sulfur modification protein DndD	NA
UHGV-0159237_11	PHROG	phrog_77	SbcC-like subunit of palindrome specific endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0159237_11	UniRef90	UniRef90_A0A316SJK4	SMC_N domain-containing protein	NA
UHGV-0159237_11	eggNOG-mapper	1118057.CAGX01000058_gene105	nuclear chromosome segregation	NA
UHGV-0159237_11	PADLOC	AAA_15	NA	NA
UHGV-0159237_11	Pfam	PF13476	AAA domain	AAA_23
UHGV-0159237_11	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-0159237_11	Structural annotation	PF02463, MF_00449, NF041034, COG0419	NA	NA
UHGV-0159237_12	PHROG	phrog_561	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0159237_12	UniRef90	UniRef90_UPI001C05F550	recombinase RecT	NA
UHGV-0159237_12	eggNOG-mapper	1215092.PA6_009_00610	NA	NA
UHGV-0159237_12	Structural annotation	PF03837, TIGR01913, COG3723	NA	NA
UHGV-0159237_13	KOfam	K06167	phnP; phosphoribosyl 1,2-cyclic phosphate phosphodiesterase [EC:3.1.4.55]	NA
UHGV-0159237_13	PHROG	phrog_392	metal-dependent hydrolase	other
UHGV-0159237_13	UniRef90	UniRef90_A0A559IZI1	MBL fold metallo-hydrolase	NA
UHGV-0159237_13	eggNOG-mapper	1118055.CAGU01000029_gene41	Beta-lactamase superfamily domain	NA
UHGV-0159237_13	Pfam	PF12706	Beta-lactamase superfamily domain	Lactamase_B_2
UHGV-0159237_13	COG	COG1235	Phosphoribosyl 1,2-cyclic phosphate phosphodiesterase	NA
UHGV-0159237_13	Structural annotation	PF02112, MF_01818, NF041851, COG1234	NA	NA
UHGV-0159237_14	eggNOG-mapper	1121428.DESHY_20121___1	NA	NA
UHGV-0159237_14	Pfam	PF18894	Putative phage metallopeptidase	PhageMetallopep
UHGV-0159237_15	PHROG	phrog_11233	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0159237_15	eggNOG-mapper	1195073.I6XGC7_9CAUD	calcium ion binding	NA
UHGV-0159237_15	Structural annotation	PF07106, MF_01819, NF040642, COG1846	NA	NA
UHGV-0159237_16	PHROG	phrog_9804	NA	unknown function
UHGV-0159237_16	UniRef90	UniRef90_A0A316S7J6	Inhibitor_G39P domain-containing protein	NA
UHGV-0159237_16	eggNOG-mapper	697281.Mahau_0086	Loader and inhibitor of phage G40P	NA
UHGV-0159237_16	Structural annotation	PF11417	NA	NA
UHGV-0159237_22	Structural annotation	PF13248	NA	NA
UHGV-0159237_27	Structural annotation	PF21098	NA	NA
UHGV-0159237_28	Structural annotation	PF17400	NA	NA
UHGV-0159237_29	Structural annotation	PF11998, COG5420	NA	NA
UHGV-0159237_31	PHROG	phrog_824	NA	unknown function
UHGV-0159237_31	UniRef90	UniRef90_A0A316S9D0	VRR-NUC domain-containing protein	NA
UHGV-0159237_31	eggNOG-mapper	1123288.SOV_4c02500	Archaeal holliday junction resolvase (hjc)	NA
UHGV-0159237_31	Pfam	PF01870	Archaeal holliday junction resolvase (hjc)	Hjc
UHGV-0159237_31	Structural annotation	PF18743, MF_01490, NF040854, COG1591	NA	NA
UHGV-0159237_32	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0159237_32	eggNOG-mapper	1122919.KB905608_gene4466	Transcriptional regulator, RinA family	NA
UHGV-0159237_32	NCBIFam	TIGR01636.1	phage transcriptional regulator, RinA family	NA
UHGV-0159237_32	Structural annotation	PF05263, TIGR01636	NA	NA
UHGV-0159237_33	KOfam	K22014	Nu1, Noh; terminase small subunit / prophage DNA-packing protein	NA
UHGV-0159237_33	PHROG	phrog_57	terminase small subunit	head and packaging
UHGV-0159237_33	UniRef90	UniRef90_UPI001E630431	terminase small subunit	NA
UHGV-0159237_33	eggNOG-mapper	864563.HMPREF9166_0572	transposase activity	NA
UHGV-0159237_33	COG	COG4220	Phage DNA packaging protein, Nu1 subunit of terminase	NA
UHGV-0159237_34	KOfam	K21512	gpA; terminase, large subunit [EC:3.1.21.4]	NA
UHGV-0159237_34	PHROG	phrog_15	terminase large subunit	head and packaging
UHGV-0159237_34	UniRef90	UniRef90_A0A3C1INY8	Terminase	NA
UHGV-0159237_34	eggNOG-mapper	883156.HMPREF9282_01236	Phage terminase large subunit (GpA)	NA
UHGV-0159237_34	Pfam	PF05876	Phage terminase large subunit gpA, ATPase domain	GpA_ATPase
UHGV-0159237_34	Pfam	PF20454	Terminase large subunit gpA, endonuclease domain	GpA_nuclease
UHGV-0159237_34	COG	COG5525	Phage terminase, large subunit GpA	NA
UHGV-0159237_34	Structural annotation	PF05876, PF20454, MF_04144, TIGR01547, COG5525	NA	NA
UHGV-0159237_36	PHROG	phrog_21	portal protein	head and packaging
UHGV-0159237_36	UniRef90	UniRef90_A0A3C1INQ6	Phage portal protein	NA
UHGV-0159237_36	eggNOG-mapper	935948.KE386495_gene1189	Phage portal protein, lambda family	NA
UHGV-0159237_36	Pfam	PF05136	Phage portal protein, lambda family	Phage_portal_2
UHGV-0159237_36	NCBIFam	TIGR01539.1	phage portal protein	NA
UHGV-0159237_36	COG	COG5511	Phage capsid protein	NA
UHGV-0159237_36	Structural annotation	PF05136, MF_04135, TIGR01539, COG5511	NA	NA
UHGV-0159237_37	KOfam	K06904	NA	NA
UHGV-0159237_37	PHROG	phrog_4523	major head and protease protein	head and packaging
UHGV-0159237_37	UniRef90	UniRef90_A0A3C1INU1	Mu-like_gpT domain-containing protein	NA
UHGV-0159237_37	eggNOG-mapper	883156.HMPREF9282_01239	Caudovirus prohead protease	NA
UHGV-0159237_37	Pfam	PF04586	Caudovirus prohead serine protease	Peptidase_S78
UHGV-0159237_37	Pfam	PF10124	Mu-like prophage major head subunit gpT	Mu-like_gpT
UHGV-0159237_37	COG	COG3087	Cell division protein FtsN	NA
UHGV-0159237_37	Structural annotation	PF19821, PF04586, MF_04119, TIGR04387, TIGR01543, COG3740, COG4653	NA	NA
UHGV-0159237_38	PHROG	phrog_122	head decoration	head and packaging
UHGV-0159237_38	UniRef90	UniRef90_A0A3C1IQP2	DNA breaking-rejoining protein	NA
UHGV-0159237_38	Pfam	PF09956	NA	DUF2190
UHGV-0159237_38	COG	COG5471	Predicted phage recombinase, RecA/RadA family	NA
UHGV-0159237_38	Structural annotation	PF09956, COG5471	NA	NA
UHGV-0159237_39	Structural annotation	PF13856, COG5614	NA	NA
UHGV-0159237_40	PHROG	phrog_222	tail protein	tail
UHGV-0159237_40	eggNOG-mapper	910314.HMPREF9220_0616	NA	NA
UHGV-0159237_40	Structural annotation	PF05069, TIGR01725	NA	NA
UHGV-0159237_41	PHROG	phrog_17431	NA	unknown function
UHGV-0159237_41	Structural annotation	PF20765, COG5003	NA	NA
UHGV-0159237_42	PHROG	phrog_290	minor tail protein	tail
UHGV-0159237_42	UniRef90	UniRef90_UPI001032C993	phage tail tube protein	NA
UHGV-0159237_42	eggNOG-mapper	1128111.HMPREF0870_01763	NA	NA
UHGV-0159237_42	Pfam	PF18906	Phage tail tube protein	Phage_tube_2
UHGV-0159237_42	Structural annotation	PF18906, TIGR02241, TIGR02126, COG5437, COG3498	NA	NA
UHGV-0159237_45	PHROG	phrog_30973	NA	unknown function
UHGV-0159237_45	UniRef90	UniRef90_UPI001032C687	phage tail tape measure protein	NA
UHGV-0159237_45	eggNOG-mapper	484770.UFO1_2454	nuclear chromosome segregation	NA
UHGV-0159237_45	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-0159237_45	Structural annotation	PF20155, TIGR01760, COG3941	NA	NA
UHGV-0159237_46	PHROG	phrog_384	virion structural protein	head and packaging
UHGV-0159237_46	eggNOG-mapper	1280706.AUJE01000003_gene2251	NA	NA
UHGV-0159237_46	Structural annotation	PF05939, TIGR02217, COG4718	NA	NA
UHGV-0159237_47	PHROG	phrog_18	minor tail protein	tail
UHGV-0159237_47	UniRef90	UniRef90_UPI001032C9EC	NA	NA
UHGV-0159237_47	eggNOG-mapper	1280706.AUJE01000003_gene2250	Phage minor tail protein L	NA
UHGV-0159237_47	Pfam	PF05100	Phage minor tail protein L	Phage_tail_L
UHGV-0159237_47	COG	COG4672	Phage tail protein	NA
UHGV-0159237_47	Structural annotation	PF08875, TIGR01600, COG4672	NA	NA
UHGV-0159237_48	KOfam	K13695	nlpC; probable lipoprotein NlpC	NA
UHGV-0159237_48	PHROG	phrog_329	minor tail protein	tail
UHGV-0159237_48	UniRef90	UniRef90_A0A3C1IQP9	NlpC/P60 domain-containing protein	NA
UHGV-0159237_48	eggNOG-mapper	1273103.NM10_03081	NlpC/P60 family	NA
UHGV-0159237_48	Pfam	PF00877	NlpC/P60 family	NLPC_P60
UHGV-0159237_48	COG	COG0791	Cell wall-associated hydrolase, NlpC_P60 family	NA
UHGV-0159237_48	Structural annotation	PF00877, NF008096, COG0791	NA	NA
UHGV-0159237_49	PHROG	phrog_31	baseplate hub protein Tal	tail
UHGV-0159237_49	UniRef90	UniRef90_A0A316S7W9	Phage-tail_3 domain-containing protein	NA
UHGV-0159237_49	eggNOG-mapper	1273103.NM10_03076	cellulase activity	NA
UHGV-0159237_49	Pfam	PF13550	Putative phage tail protein	Phage-tail_3
UHGV-0159237_49	COG	COG1511	NA	NA
UHGV-0159237_50	PHROG	phrog_31	baseplate hub protein Tal	tail
UHGV-0159237_50	UniRef90	UniRef90_A0A349YR63	Phage-tail_3 domain-containing protein (Fragment)	NA
UHGV-0159237_50	eggNOG-mapper	742743.HMPREF9453_00552	Putative phage tail protein	NA
UHGV-0159237_50	COG	COG4733	Phage-related protein, tail protein J	NA
UHGV-0159237_51	PHROG	phrog_19976	tail assembly protein	tail
UHGV-0159237_51	UniRef90	UniRef90_A0A6C0CJK8	Mtd_N domain-containing protein (Fragment)	NA
UHGV-0159237_51	eggNOG-mapper	1415147.V5Q7W6_9CAUD	NA	NA
UHGV-0159237_52	PHROG	phrog_4209	tail fiber protein	tail
UHGV-0159237_52	eggNOG-mapper	864563.HMPREF9166_0550	cellulose 1,4-beta-cellobiosidase activity	NA
UHGV-0159237_52	COG	COG5301	Phage-related tail fiber protein	NA