UHGV-0159305

Genome information

Genome length 34,040 bps

CDS count 43

Completeness 100.00% (complete)

geNomad score 0.9779

Prediction confidence Confident

Genome information
Genome ID	UHGV-0159305
vOTU ID	vOTU-046268
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_456061
BioSample	NA
Country	United States
Virus prediction confidence	Confident

Quality assessment
CheckV method	DTR
CheckV completeness	100.00% (complete)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	13
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9779
Virus hallmark genes (geNomad)	10
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	27.44
Jumbo phage	No

Genome content
Genome length	34,040 bps
GC content	65.82%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	43
CDS density	91.19%
Average CDS length	723.63 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0159305_2	PHROG	phrog_1496	terminase small subunit	head and packaging
UHGV-0159305_2	eggNOG-mapper	208439.AJAP_28070	NA	NA
UHGV-0159305_2	Structural annotation	PF05119, TIGR01558, COG3747	NA	NA
UHGV-0159305_3	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0159305_3	UniRef90	UniRef90_UPI0010A21ED5	terminase	NA
UHGV-0159305_3	eggNOG-mapper	471856.Jden_2165	Terminase	NA
UHGV-0159305_3	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0159305_3	Structural annotation	PF20441, PF03354, MF_04145, TIGR01547, COG4626	NA	NA
UHGV-0159305_4	PHROG	phrog_104	portal protein	head and packaging
UHGV-0159305_4	UniRef90	UniRef90_UPI0010A24F20	phage portal protein	NA
UHGV-0159305_4	eggNOG-mapper	158787.BSCA_0742	Phage portal protein, SPP1 Gp6-like	NA
UHGV-0159305_4	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0159305_4	Structural annotation	PF05133, MF_04120, TIGR01538, COG3567	NA	NA
UHGV-0159305_5	PHROG	phrog_13257	head maturation protease	head and packaging
UHGV-0159305_5	UniRef90	UniRef90_A0A8F3EBC1	MuF-like minor capsid protein	NA
UHGV-0159305_5	eggNOG-mapper	471856.Jden_2167	NA	NA
UHGV-0159305_7	PHROG	phrog_283	major head protein	head and packaging
UHGV-0159305_7	UniRef90	UniRef90_A0A8F3EAH9	Major capsid protein	NA
UHGV-0159305_7	eggNOG-mapper	1451189.CFAL_09695	P22 coat protein - gene protein 5	NA
UHGV-0159305_7	Pfam	PF11651	P22 coat protein - gene protein 5	P22_CoatProtein
UHGV-0159305_7	Structural annotation	PF11651, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-0159305_8	eggNOG-mapper	158787.BSCA_0736	NA	NA
UHGV-0159305_8	Structural annotation	PF05135, TIGR01560	NA	NA
UHGV-0159305_9	PHROG	phrog_13779	NA	unknown function
UHGV-0159305_9	UniRef90	UniRef90_A0A8B3RKD9	Phage associated protein	NA
UHGV-0159305_9	eggNOG-mapper	888439.HMPREF9240_01928	NA	NA
UHGV-0159305_9	Pfam	PF19586	NA	DUF6093
UHGV-0159305_9	Structural annotation	PF19586, TIGR01563, COG5614	NA	NA
UHGV-0159305_10	PHROG	phrog_19109	NA	unknown function
UHGV-0159305_10	eggNOG-mapper	1437603.BMON_0134	NA	NA
UHGV-0159305_10	Structural annotation	TIGR01725	NA	NA
UHGV-0159305_11	Structural annotation	PF08873	NA	NA
UHGV-0159305_12	PHROG	phrog_2491	major tail protein	tail
UHGV-0159305_12	Pfam	PF01833	IPT/TIG domain	TIG
UHGV-0159305_12	COG	COG5640	Secreted trypsin-like serine protease	NA
UHGV-0159305_12	Structural annotation	PF16460, PF16400, TIGR02126, COG5437	NA	NA
UHGV-0159305_15	PHROG	phrog_1533	tail length tape measure protein	tail
UHGV-0159305_15	UniRef90	UniRef90_UPI0010A250C0	phage tail tape measure protein	NA
UHGV-0159305_15	eggNOG-mapper	1349820.M707_02760	Phage tail tape measure protein, TP901 family	NA
UHGV-0159305_15	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-0159305_15	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-0159305_15	COG	COG5283	Phage-related tail protein	NA
UHGV-0159305_15	Structural annotation	PF10145, TIGR01760	NA	NA
UHGV-0159305_16	Structural annotation	PF19266, NF033675, TIGR02126, COG4718	NA	NA
UHGV-0159305_17	eggNOG-mapper	521393.JH806633_gene1287	NA	NA
UHGV-0159305_17	Structural annotation	PF14594, NF033848, COG4379	NA	NA
UHGV-0159305_18	Structural annotation	PF21466, PF20328, PF00386, TIGR04362	NA	NA
UHGV-0159305_19	eggNOG-mapper	888439.HMPREF9240_01845	NA	NA
UHGV-0159305_19	Structural annotation	PF05475, NF033147	NA	NA
UHGV-0159305_20	eggNOG-mapper	888056.HMPREF9062_1494	NA	NA
UHGV-0159305_20	Structural annotation	PF00331, MF_00097, NF000736, COG3693	NA	NA
UHGV-0159305_25	PHROG	phrog_284	exonuclease	DNA, RNA and nucleotide metabolism
UHGV-0159305_25	UniRef90	UniRef90_A0A2K9VGT5	Repair endonuclease	NA
UHGV-0159305_25	eggNOG-mapper	1206739.BAGJ01000262_gene2932	NA	NA
UHGV-0159305_25	Structural annotation	PF12850, MF_00325, NF003118, COG1311	NA	NA
UHGV-0159305_26	KOfam	K06191	nrdH; glutaredoxin-like protein NrdH	NA
UHGV-0159305_26	PHROG	phrog_22	thioredoxin domain	DNA, RNA and nucleotide metabolism
UHGV-0159305_26	Pfam	PF00462	Glutaredoxin	Glutaredoxin
UHGV-0159305_26	COG	COG0695	Glutaredoxin	NA
UHGV-0159305_26	Structural annotation	PF00085, MF_01132, TIGR02194, COG0695	NA	NA
UHGV-0159305_27	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0159305_27	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0159305_27	UniRef90	UniRef90_UPI000BF2E60F	single-stranded DNA-binding protein	NA
UHGV-0159305_27	eggNOG-mapper	521393.JH806633_gene1261	Single-strand binding protein family	NA
UHGV-0159305_27	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0159305_27	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0159305_27	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0159305_27	Structural annotation	PF00436, MF_00984, NF005851, COG0629	NA	NA
UHGV-0159305_28	PHROG	phrog_244	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0159305_28	UniRef90	UniRef90_G1FMW8	Holliday junction resolvase	NA
UHGV-0159305_28	eggNOG-mapper	1273125.Rrhod_0728	NA	NA
UHGV-0159305_28	Structural annotation	COG1591	NA	NA
UHGV-0159305_29	PHROG	phrog_236	nucleotide kinase	other
UHGV-0159305_29	UniRef90	UniRef90_UPI001D0849B4	NA	NA
UHGV-0159305_29	eggNOG-mapper	438482.A4ZRB2_9CAUD	NA	NA
UHGV-0159305_29	Pfam	PF11753	NA	DUF3310
UHGV-0159305_30	KOfam	K01520	dut, DUT; dUTP pyrophosphatase [EC:3.6.1.23]	NA
UHGV-0159305_30	PHROG	phrog_135	dUTPase	DNA, RNA and nucleotide metabolism
UHGV-0159305_30	UniRef90	UniRef90_A0A1Z9B3L7	dUTPase domain-containing protein	NA
UHGV-0159305_30	eggNOG-mapper	1223544.GSI01S_10_02100	dUTP diphosphatase activity	NA
UHGV-0159305_30	Pfam	PF00692	dUTPase	dUTPase
UHGV-0159305_30	NCBIFam	TIGR00576.1	dUTP diphosphatase	NA
UHGV-0159305_30	COG	COG0756	dUTP pyrophosphatase (dUTPase)	NA
UHGV-0159305_30	Structural annotation	PF00692, MF_00116, TIGR00576, COG0756	NA	NA
UHGV-0159305_31	PHROG	phrog_1590	NA	unknown function
UHGV-0159305_31	Structural annotation	TIGR03070	NA	NA
UHGV-0159305_32	PHROG	phrog_561	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0159305_32	UniRef90	UniRef90_A0A7M1RLV4	RecT-like protein	NA
UHGV-0159305_32	eggNOG-mapper	525268.HMPREF0308_2040	NA	NA
UHGV-0159305_32	Structural annotation	PF03837, TIGR01913, COG3723	NA	NA
UHGV-0159305_33	Structural annotation	PF16067	NA	NA
UHGV-0159305_39	PHROG	phrog_270	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0159305_39	Structural annotation	PF01978, MF_01909, NF041413, COG1846	NA	NA
UHGV-0159305_40	KOfam	K02314	dnaB; replicative DNA helicase [EC:5.6.2.3]	NA
UHGV-0159305_40	PHROG	phrog_19	DnaB-like replicative helicase	DNA, RNA and nucleotide metabolism
UHGV-0159305_40	UniRef90	UniRef90_UPI001C58A644	AAA family ATPase	NA
UHGV-0159305_40	eggNOG-mapper	1414742.V5R9D2_9CAUD	DNA helicase activity	NA
UHGV-0159305_40	Pfam	PF00772	DnaB-like helicase N terminal domain	DnaB
UHGV-0159305_40	Pfam	PF03796	DnaB-like helicase C terminal domain	DnaB_C
UHGV-0159305_40	Structural annotation	PF03796, PF00772, MF_04155, TIGR00665, COG0305	NA	NA
UHGV-0159305_42	PHROG	phrog_14030	NA	unknown function
UHGV-0159305_42	eggNOG-mapper	1120944.JONS01000016_gene1221	NA	NA
UHGV-0159305_43	eggNOG-mapper	883077.HMPREF9241_01713	NA	NA