UHGV-0159344

Genome information

Genome length 31,823 bps

CDS count 49

Completeness 85.77% (medium-quality)

geNomad score 0.9765

Prediction confidence Confident

Genome information
Genome ID	UHGV-0159344
vOTU ID	vOTU-027907
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_488647
BioSample	NA
Country	Netherlands
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	85.77% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	20
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9765
Virus hallmark genes (geNomad)	10
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	34.37
Jumbo phage	No

Genome content
Genome length	31,823 bps
GC content	42.07%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	49
CDS density	92.66%
Average CDS length	604.71 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0159344_1	KOfam	K06400	spoIVCA; site-specific DNA recombinase	NA
UHGV-0159344_1	PHROG	phrog_95	integrase	integration and excision
UHGV-0159344_1	UniRef90	UniRef90_A0A174HKH1	Multiple promoter invertase	NA
UHGV-0159344_1	eggNOG-mapper	411461.DORFOR_00037	Resolvase, N terminal domain	NA
UHGV-0159344_1	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-0159344_1	Pfam	PF13408	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
UHGV-0159344_1	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-0159344_1	Structural annotation	PF00239, NF041201, COG1961	NA	NA
UHGV-0159344_2	KOfam	K07504	K07504; predicted type IV restriction endonuclease	NA
UHGV-0159344_2	PHROG	phrog_4225	endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0159344_2	UniRef90	UniRef90_A0A173YHF4	Type I site-specific deoxyribonuclease	NA
UHGV-0159344_2	eggNOG-mapper	411462.DORLON_00821	Type I restriction enzyme R protein N terminus (HSDR_N)	NA
UHGV-0159344_2	Pfam	PF04313	Type I restriction enzyme R protein N terminus (HSDR_N)	HSDR_N
UHGV-0159344_2	COG	COG4748	NA	NA
UHGV-0159344_2	Structural annotation	PF13588, TIGR04256, COG4748	NA	NA
UHGV-0159344_3	PHROG	phrog_87	metallo-protease	other
UHGV-0159344_3	UniRef90	UniRef90_UPI000E41551B	ImmA/IrrE family metallo-endopeptidase	NA
UHGV-0159344_3	eggNOG-mapper	1235792.C808_05259	Zn peptidase	NA
UHGV-0159344_3	Pfam	PF06114	IrrE N-terminal-like domain	Peptidase_M78
UHGV-0159344_3	COG	COG2856	Zn-dependent peptidase ImmA, M78 family	NA
UHGV-0159344_3	Structural annotation	PF06114, COG2856	NA	NA
UHGV-0159344_4	UniRef90	UniRef90_UPI00156F9E81	XRE family transcriptional regulator	NA
UHGV-0159344_4	eggNOG-mapper	1235798.C817_00736	addiction module antidote protein HigA	NA
UHGV-0159344_4	COG	COG3093	Plasmid maintenance system antidote protein VapI, contains XRE-type HTH domain	NA
UHGV-0159344_4	Structural annotation	PF05339, NF041951, COG1396	NA	NA
UHGV-0159344_5	UniRef90	UniRef90_UPI00156E36D7	helix-turn-helix domain-containing protein	NA
UHGV-0159344_5	eggNOG-mapper	1347392.CCEZ01000005_gene1206	NA	NA
UHGV-0159344_5	Structural annotation	PF01381, NF041951, COG1476	NA	NA
UHGV-0159344_6	PHROG	phrog_3882	NA	unknown function
UHGV-0159344_7	PHROG	phrog_1305	DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0159344_7	UniRef90	UniRef90_UPI0018984E24	NA	NA
UHGV-0159344_7	eggNOG-mapper	445974.CLORAM_02962	NA	NA
UHGV-0159344_7	Pfam	PF13643	NA	DUF4145
UHGV-0159344_7	Structural annotation	PF06573	NA	NA
UHGV-0159344_11	Structural annotation	PF16826	NA	NA
UHGV-0159344_13	PHROG	phrog_434	RecE-like recombination exonuclease	DNA, RNA and nucleotide metabolism
UHGV-0159344_13	UniRef90	UniRef90_A0A173ZAF2	Putative phage-type endonuclease	NA
UHGV-0159344_13	eggNOG-mapper	742765.HMPREF9457_02105	YqaJ viral recombinase family	NA
UHGV-0159344_13	Pfam	PF09588	YqaJ-like viral recombinase domain	YqaJ
UHGV-0159344_13	NCBIFam	TIGR03033.1	putative phage-type endonuclease	NA
UHGV-0159344_13	COG	COG5377	Phage-related protein, predicted endonuclease	NA
UHGV-0159344_13	Structural annotation	PF09588, MF_03030, TIGR03033, COG5377	NA	NA
UHGV-0159344_14	PHROG	phrog_674	NA	unknown function
UHGV-0159344_14	UniRef90	UniRef90_A0A8E3MVI4	NA	NA
UHGV-0159344_14	eggNOG-mapper	742765.HMPREF9457_02106	NA	NA
UHGV-0159344_14	Pfam	PF07083	NA	DUF1351
UHGV-0159344_14	Structural annotation	PF07083	NA	NA
UHGV-0159344_15	KOfam	K07455	recT; recombination protein RecT	NA
UHGV-0159344_15	PHROG	phrog_148	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0159344_15	UniRef90	UniRef90_A0A173ZB66	p33	NA
UHGV-0159344_15	eggNOG-mapper	742765.HMPREF9457_02107	RecT family	NA
UHGV-0159344_15	Pfam	PF03837	RecT family	RecT
UHGV-0159344_15	NCBIFam	TIGR00616.1	recombinase, phage RecT family	NA
UHGV-0159344_15	COG	COG3723	Recombinational DNA repair protein RecT	NA
UHGV-0159344_15	Structural annotation	PF03837, TIGR00616, COG3723	NA	NA
UHGV-0159344_16	PHROG	phrog_997	replication terminator	DNA, RNA and nucleotide metabolism
UHGV-0159344_16	eggNOG-mapper	411461.DORFOR_00017	NA	NA
UHGV-0159344_17	PHROG	phrog_1029	NA	unknown function
UHGV-0159344_17	eggNOG-mapper	411461.DORFOR_00016	NA	NA
UHGV-0159344_17	Structural annotation	PF10065, COG5532	NA	NA
UHGV-0159344_18	PHROG	phrog_140	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0159344_18	UniRef90	UniRef90_A0A173ZD06	Holliday junction resolvase	NA
UHGV-0159344_18	eggNOG-mapper	411461.DORFOR_00015	Endodeoxyribonuclease RusA	NA
UHGV-0159344_18	Pfam	PF05866	Endodeoxyribonuclease RusA	RusA
UHGV-0159344_18	COG	COG4570	Holliday junction resolvase RusA (prophage-encoded endonuclease)	NA
UHGV-0159344_18	Structural annotation	PF05866, NF007305, COG4570	NA	NA
UHGV-0159344_19	PHROG	phrog_2562	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0159344_19	UniRef90	UniRef90_A0A173ZAT7	NA	NA
UHGV-0159344_19	eggNOG-mapper	1235790.C805_00030	NA	NA
UHGV-0159344_19	Pfam	PF14297	Lin1244/Lin1753-like, N-terminal	Lin1244_N
UHGV-0159344_19	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0159344_19	Structural annotation	PF14297	NA	NA
UHGV-0159344_21	eggNOG-mapper	1232453.BAIF02000057_gene1147	NA	NA
UHGV-0159344_22	PHROG	phrog_15198	NA	unknown function
UHGV-0159344_22	UniRef90	UniRef90_A0A3R5X694	NA	NA
UHGV-0159344_22	Pfam	PF04448	NA	DUF551
UHGV-0159344_25	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0159344_25	UniRef90	UniRef90_R6ZAS5	GED domain-containing protein	NA
UHGV-0159344_25	eggNOG-mapper	742765.HMPREF9457_02116	NA	NA
UHGV-0159344_25	Structural annotation	MF_00307	NA	NA
UHGV-0159344_27	PHROG	phrog_2412	NA	unknown function
UHGV-0159344_27	UniRef90	UniRef90_UPI001E414EFE	KGG domain-containing protein	NA
UHGV-0159344_27	eggNOG-mapper	742723.HMPREF9477_00912	NA	NA
UHGV-0159344_28	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0159344_28	PHROG	phrog_2	terminase large subunit	head and packaging
UHGV-0159344_28	UniRef90	UniRef90_A0A414U7F9	PBSX family phage terminase large subunit	NA
UHGV-0159344_28	eggNOG-mapper	742765.HMPREF9457_02119	Terminase-like family	NA
UHGV-0159344_28	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-0159344_28	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0159344_28	COG	COG1783	Phage terminase large subunit	NA
UHGV-0159344_28	Structural annotation	PF04466, PF20441, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-0159344_29	PHROG	phrog_533	portal protein	head and packaging
UHGV-0159344_29	UniRef90	UniRef90_A0A414QMA7	Phage capsid protein	NA
UHGV-0159344_29	eggNOG-mapper	742765.HMPREF9457_02120	NA	NA
UHGV-0159344_29	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-0159344_30	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0159344_30	UniRef90	UniRef90_UPI001899F79D	phage minor capsid protein	NA
UHGV-0159344_30	eggNOG-mapper	411461.DORFOR_00748	NA	NA
UHGV-0159344_30	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0159344_30	COG	COG2369	NA	NA
UHGV-0159344_30	Structural annotation	PF06152, TIGR01641	NA	NA
UHGV-0159344_32	PHROG	phrog_3675	NA	unknown function
UHGV-0159344_32	UniRef90	UniRef90_UPI001C02868E	YjcQ family protein	NA
UHGV-0159344_32	eggNOG-mapper	1235799.C818_04221	YjcQ protein	NA
UHGV-0159344_32	Pfam	PF09639	YjcQ protein	YjcQ
UHGV-0159344_32	Structural annotation	PF09639, TIGR04176, COG2345	NA	NA
UHGV-0159344_33	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-0159344_33	UniRef90	UniRef90_A0A1C5W5U5	Phage minor structural protein GP20	NA
UHGV-0159344_33	eggNOG-mapper	742765.HMPREF9457_02126	COG NOG36366 non supervised orthologous group	NA
UHGV-0159344_33	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-0159344_33	Structural annotation	PF06810	NA	NA
UHGV-0159344_34	PHROG	phrog_422	major head protein	head and packaging
UHGV-0159344_34	eggNOG-mapper	658655.HMPREF0988_02560	NA	NA
UHGV-0159344_34	Structural annotation	PF05065, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-0159344_35	PHROG	phrog_541	head-tail adaptor	connector
UHGV-0159344_35	UniRef90	UniRef90_C4IFE6	Putative gp8	NA
UHGV-0159344_35	eggNOG-mapper	632245.CLP_1650	NA	NA
UHGV-0159344_35	Structural annotation	PF05135	NA	NA
UHGV-0159344_36	PHROG	phrog_3366	NA	unknown function
UHGV-0159344_36	eggNOG-mapper	742765.HMPREF9457_02129	NA	NA
UHGV-0159344_36	Pfam	PF20536	NA	DUF6751
UHGV-0159344_36	Structural annotation	PF20536, TIGR01563, COG5614	NA	NA
UHGV-0159344_37	PHROG	phrog_556	minor head protein	head and packaging
UHGV-0159344_37	UniRef90	UniRef90_UPI00093128B4	minor capsid protein	NA
UHGV-0159344_37	eggNOG-mapper	411462.DORLON_00783	NA	NA
UHGV-0159344_37	Structural annotation	PF11114	NA	NA
UHGV-0159344_38	PHROG	phrog_3266	tail completion	connector
UHGV-0159344_38	eggNOG-mapper	411461.DORFOR_00740	NA	NA
UHGV-0159344_38	Structural annotation	PF12691	NA	NA
UHGV-0159344_39	PHROG	phrog_3099	NA	unknown function
UHGV-0159344_39	eggNOG-mapper	411462.DORLON_00781	NA	NA
UHGV-0159344_39	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-0159344_40	PHROG	phrog_4450	NA	unknown function
UHGV-0159344_40	eggNOG-mapper	411462.DORLON_00780	NA	NA
UHGV-0159344_40	Pfam	PF20378	NA	DUF6673
UHGV-0159344_40	Structural annotation	PF20378	NA	NA
UHGV-0159344_41	PHROG	phrog_706	NA	unknown function
UHGV-0159344_41	UniRef90	UniRef90_A0A173TSE6	Bacteriophage Gp15 protein	NA
UHGV-0159344_41	eggNOG-mapper	411462.DORLON_00779	COG NOG24969 non supervised orthologous group	NA
UHGV-0159344_41	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-0159344_41	Structural annotation	PF06854	NA	NA
UHGV-0159344_42	PHROG	phrog_5602	NA	unknown function
UHGV-0159344_42	eggNOG-mapper	411461.DORFOR_00736	NA	NA
UHGV-0159344_42	Structural annotation	PF10122, COG4416	NA	NA
UHGV-0159344_43	PHROG	phrog_58	tail length tape measure protein	tail
UHGV-0159344_43	UniRef90	UniRef90_A0A174JJE7	Phage-related protein	NA
UHGV-0159344_43	eggNOG-mapper	742765.HMPREF9457_02136	nuclear chromosome segregation	NA
UHGV-0159344_43	COG	COG1511	NA	NA
UHGV-0159344_43	Structural annotation	PF20155, COG3941	NA	NA
UHGV-0159344_44	eggNOG-mapper	411462.DORLON_00776	NA	NA
UHGV-0159344_44	Structural annotation	PF16774, TIGR01633, COG4722	NA	NA
UHGV-0159344_45	PHROG	phrog_538	minor tail protein	tail
UHGV-0159344_45	UniRef90	UniRef90_UPI001F3E20C1	siphovirus ReqiPepy6 Gp37-like family protein	NA
UHGV-0159344_45	eggNOG-mapper	411460.RUMTOR_02096	NA	NA
UHGV-0159344_45	Pfam	PF14594	Siphovirus ReqiPepy6 Gp37-like protein	Sipho_Gp37
UHGV-0159344_45	Structural annotation	PF14594, TIGR01665, COG4379	NA	NA
UHGV-0159344_46	PHROG	phrog_9994	NA	unknown function
UHGV-0159344_46	UniRef90	UniRef90_A0A6L8RVX5	H_lectin domain-containing protein	NA
UHGV-0159344_46	eggNOG-mapper	742765.HMPREF9457_03373	NA	NA
UHGV-0159344_46	Structural annotation	PF20747	NA	NA
UHGV-0159344_48	KOfam	K03733	xerC; integrase/recombinase XerC	NA
UHGV-0159344_48	PHROG	phrog_1	integrase	integration and excision
UHGV-0159344_48	UniRef90	UniRef90_A0A174ILR0	Tyrosine recombinase XerD	NA
UHGV-0159344_48	eggNOG-mapper	411468.CLOSCI_02414	Belongs to the 'phage' integrase family	NA
UHGV-0159344_48	Pfam	PF13495	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_4
UHGV-0159344_48	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0159344_48	COG	COG4974	Site-specific recombinase XerD	NA
UHGV-0159344_48	Structural annotation	PF00589, PF02899, MF_01807, TIGR02224, COG4973	NA	NA