UHGV-0159392

Genome information

Genome length 30,055 bps

CDS count 49

Completeness 65.51% (medium-quality)

geNomad score 0.9671

Prediction confidence Confident

Genome information
Genome ID	UHGV-0159392
vOTU ID	vOTU-027911
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_460255
BioSample	NA
Country	United States
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	65.51% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	22
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9671
Virus hallmark genes (geNomad)	14
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	59.7
Jumbo phage	No

Genome content
Genome length	30,055 bps
GC content	56.25%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	49
CDS density	95.44%
Average CDS length	590.45 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0159392_1	KOfam	K14059	int; integrase	NA
UHGV-0159392_1	PHROG	phrog_1	integrase	integration and excision
UHGV-0159392_1	UniRef90	UniRef90_UPI001960B1CB	site-specific integrase	NA
UHGV-0159392_1	eggNOG-mapper	75379.Tint_1538	Belongs to the 'phage' integrase family	NA
UHGV-0159392_1	Pfam	PF13356	Arm DNA-binding domain	Arm-DNA-bind_3
UHGV-0159392_1	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0159392_1	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0159392_1	Structural annotation	PF00589, PF13356, PF14659, MF_01808, NF007246, COG4974	NA	NA
UHGV-0159392_2	Pfam	PF12728	Helix-turn-helix domain	HTH_17
UHGV-0159392_4	PHROG	phrog_210	NA	unknown function
UHGV-0159392_4	UniRef90	UniRef90_UPI00093FF5B5	NA	NA
UHGV-0159392_4	eggNOG-mapper	1215092.PA6_014_00520	NA	NA
UHGV-0159392_4	Pfam	PF10065	NA	DUF2303
UHGV-0159392_4	COG	COG5532	NA	NA
UHGV-0159392_4	Structural annotation	PF10065, COG5532	NA	NA
UHGV-0159392_5	PHROG	phrog_204	NA	unknown function
UHGV-0159392_5	eggNOG-mapper	1286631.X805_04650	NA	NA
UHGV-0159392_6	PHROG	phrog_2449	single strand annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0159392_6	UniRef90	UniRef90_A0A849BDJ3	Phage recombination protein Bet	NA
UHGV-0159392_6	eggNOG-mapper	637389.Acaty_c1934	TIGRFAM Phage recombination protein Bet	NA
UHGV-0159392_6	Pfam	PF03837	RecT family	RecT
UHGV-0159392_6	NCBIFam	TIGR01913.1	phage recombination protein Bet	NA
UHGV-0159392_6	Structural annotation	PF03837, TIGR01913, COG3723	NA	NA
UHGV-0159392_9	Structural annotation	NF041588	NA	NA
UHGV-0159392_10	PHROG	phrog_7839	NA	unknown function
UHGV-0159392_10	eggNOG-mapper	202954.BBNK01000034_gene3794	NA	NA
UHGV-0159392_10	Structural annotation	PF08860	NA	NA
UHGV-0159392_12	PHROG	phrog_2245	nucleoside triphosphate pyrophosphohydrolase	other
UHGV-0159392_12	UniRef90	UniRef90_A0A415TAK8	NA	NA
UHGV-0159392_12	eggNOG-mapper	658655.HMPREF0988_00885	NA	NA
UHGV-0159392_17	KOfam	K01356	lexA; repressor LexA [EC:3.4.21.88]	NA
UHGV-0159392_17	PHROG	phrog_4	transcriptional repressor	transcription regulation
UHGV-0159392_17	UniRef90	UniRef90_UPI000DE9BBB9	helix-turn-helix domain-containing protein	NA
UHGV-0159392_17	eggNOG-mapper	1082705.JIBP01000007_gene1328	repressor	NA
UHGV-0159392_17	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0159392_17	Pfam	PF00717	Peptidase S24-like	Peptidase_S24
UHGV-0159392_17	COG	COG2842	Bacteriophage DNA transposition protein, AAA+ family ATPase	NA
UHGV-0159392_17	Structural annotation	PF00717, PF01381, MF_00015, TIGR00498, COG2932	NA	NA
UHGV-0159392_18	UniRef90	UniRef90_A0A2N5LGP3	Cytoplasmic chaperone TorD	NA
UHGV-0159392_18	COG	COG4197	DNA-binding transcriptional regulator YdaS, prophage-encoded, Cro superfamily	NA
UHGV-0159392_19	PHROG	phrog_25711	NA	unknown function
UHGV-0159392_19	eggNOG-mapper	1121434.AULY01000009_gene1996	NA	NA
UHGV-0159392_19	Structural annotation	PF09681, TIGR01714	NA	NA
UHGV-0159392_27	Structural annotation	PF06530, NF007225	NA	NA
UHGV-0159392_28	KOfam	K07451	mcrA; 5-methylcytosine-specific restriction enzyme A [EC:3.1.21.-]	NA
UHGV-0159392_28	PHROG	phrog_144	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0159392_28	UniRef90	UniRef90_R5PK02	Putative HNH endonuclease	NA
UHGV-0159392_28	eggNOG-mapper	1357275.AVEL02000151_gene1515	HNH nucleases	NA
UHGV-0159392_28	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0159392_28	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0159392_29	Pfam	PF08797	HIRAN domain	HIRAN
UHGV-0159392_30	PHROG	phrog_83	terminase small subunit	head and packaging
UHGV-0159392_30	UniRef90	UniRef90_A0A6L6YGN1	Phage terminase small subunit P27 family	NA
UHGV-0159392_30	eggNOG-mapper	1485544.JQKP01000008_gene1674	Phage terminase, small subunit	NA
UHGV-0159392_30	Pfam	PF05119	Phage terminase, small subunit	Terminase_4
UHGV-0159392_30	NCBIFam	TIGR01558.1	phage terminase small subunit P27 family	NA
UHGV-0159392_30	COG	COG3747	Phage terminase, small subunit	NA
UHGV-0159392_30	Structural annotation	PF05119, TIGR01558, COG3747	NA	NA
UHGV-0159392_31	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0159392_31	UniRef90	UniRef90_A0A6L6YGT4	Terminase large subunit	NA
UHGV-0159392_31	eggNOG-mapper	742821.HMPREF9464_01834	Terminase	NA
UHGV-0159392_31	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0159392_31	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0159392_31	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0159392_31	Structural annotation	PF20441, PF03354, MF_04145, TIGR01547, COG4626	NA	NA
UHGV-0159392_32	PHROG	phrog_12	portal protein	head and packaging
UHGV-0159392_32	UniRef90	UniRef90_A0A1H8GIP2	Phage portal protein, HK97 family	NA
UHGV-0159392_32	eggNOG-mapper	742821.HMPREF9464_01833	Phage portal protein	NA
UHGV-0159392_32	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0159392_32	NCBIFam	TIGR01537.1	phage portal protein	NA
UHGV-0159392_32	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0159392_32	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-0159392_33	KOfam	K06904	NA	NA
UHGV-0159392_33	PHROG	phrog_80	head maturation protease	head and packaging
UHGV-0159392_33	UniRef90	UniRef90_A0A6L6YJM7	HK97 family phage prohead protease	NA
UHGV-0159392_33	eggNOG-mapper	742821.HMPREF9464_01832	Caudovirus prohead serine protease	NA
UHGV-0159392_33	Pfam	PF04586	Caudovirus prohead serine protease	Peptidase_S78
UHGV-0159392_33	NCBIFam	TIGR01543.1	HK97 family phage prohead protease	NA
UHGV-0159392_33	COG	COG3740	Phage head maturation protease	NA
UHGV-0159392_33	Structural annotation	PF04586, TIGR01543, COG3740	NA	NA
UHGV-0159392_34	PHROG	phrog_10	major head protein	head and packaging
UHGV-0159392_34	UniRef90	UniRef90_UPI000671041A	phage major capsid protein	NA
UHGV-0159392_34	eggNOG-mapper	742821.HMPREF9464_01831	Phage capsid family	NA
UHGV-0159392_34	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0159392_34	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0159392_34	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0159392_34	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0159392_35	PHROG	phrog_40	head-tail adaptor Ad1	connector
UHGV-0159392_35	UniRef90	UniRef90_UPI0006713445	head-tail connector protein	NA
UHGV-0159392_35	eggNOG-mapper	1121871.AUAT01000022_gene1852	Phage gp6-like head-tail connector protein	NA
UHGV-0159392_35	Pfam	PF05135	Phage gp6-like head-tail connector protein	Phage_connect_1
UHGV-0159392_35	NCBIFam	TIGR01560.2	head-tail connector protein	NA
UHGV-0159392_35	Structural annotation	PF05135, TIGR01560	NA	NA
UHGV-0159392_36	PHROG	phrog_25	head closure Hc1	connector
UHGV-0159392_36	UniRef90	UniRef90_UPI00084D19B4	phage head closure protein	NA
UHGV-0159392_36	eggNOG-mapper	742821.HMPREF9464_01829	Phage head-tail joining protein	NA
UHGV-0159392_36	Pfam	PF05521	Phage head-tail joining protein	Phage_H_T_join
UHGV-0159392_36	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0159392_37	PHROG	phrog_879	tail completion or Neck1 protein	connector
UHGV-0159392_37	UniRef90	UniRef90_A0A1Y0FI51	Aminotransferase	NA
UHGV-0159392_37	Structural annotation	TIGR01725	NA	NA
UHGV-0159392_38	PHROG	phrog_209	portal protein	head and packaging
UHGV-0159392_38	eggNOG-mapper	29486.NJ56_17665	NA	NA
UHGV-0159392_38	Structural annotation	PF09646	NA	NA
UHGV-0159392_39	PHROG	phrog_165	tail sheath	tail
UHGV-0159392_39	UniRef90	UniRef90_UPI0016607B39	phage tail sheath subtilisin-like domain-containing protein	NA
UHGV-0159392_39	eggNOG-mapper	742821.HMPREF9464_01827	tail sheath	NA
UHGV-0159392_39	Pfam	PF04984	Phage tail sheath protein subtilisin-like domain	Phage_sheath_1
UHGV-0159392_39	Pfam	PF17482	Phage tail sheath C-terminal domain	Phage_sheath_1C
UHGV-0159392_39	COG	COG4386	Mu-like prophage tail sheath protein gpL	NA
UHGV-0159392_39	Structural annotation	PF10758, COG4386	NA	NA
UHGV-0159392_40	PHROG	phrog_185	tail tube protein	tail
UHGV-0159392_40	UniRef90	UniRef90_A0A1B9KUT8	Phage tail protein	NA
UHGV-0159392_40	eggNOG-mapper	1524467.IV04_21470	Phage tail tube protein	NA
UHGV-0159392_40	Pfam	PF10618	Phage tail tube protein	Tail_tube
UHGV-0159392_40	Structural annotation	PF10618, TIGR02241, COG3498	NA	NA
UHGV-0159392_42	PHROG	phrog_13338	NA	unknown function
UHGV-0159392_42	eggNOG-mapper	742821.HMPREF9464_01824	Phage-related minor tail protein	NA
UHGV-0159392_42	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-0159392_42	COG	COG5283	Phage-related tail protein	NA
UHGV-0159392_42	Structural annotation	PF10145, TIGR01760	NA	NA
UHGV-0159392_43	PHROG	phrog_184	DNA circularization	DNA, RNA and nucleotide metabolism
UHGV-0159392_43	UniRef90	UniRef90_A0A5B7ZLP1	DNA_circ_N domain-containing protein	NA
UHGV-0159392_43	eggNOG-mapper	742821.HMPREF9464_01823	DNA circularisation protein N-terminus	NA
UHGV-0159392_43	Pfam	PF07157	DNA circularisation protein N-terminus	DNA_circ_N
UHGV-0159392_43	COG	COG4228	Mu-like prophage DNA circulation protein	NA
UHGV-0159392_43	Structural annotation	PF07157, TIGR01633, COG4228	NA	NA
UHGV-0159392_44	PHROG	phrog_177	tail protein	tail
UHGV-0159392_44	UniRef90	UniRef90_A0A2W4U8P8	Baseplate protein	NA
UHGV-0159392_44	eggNOG-mapper	157783.LK03_15460	tail protein	NA
UHGV-0159392_44	Pfam	PF21683	Mu phage baseplate assembly protein GpP-like, N-terminal	GpP-like_1st
UHGV-0159392_44	COG	COG4379	Mu-like prophage tail protein gpP	NA
UHGV-0159392_44	Structural annotation	PF14594, NF033848, COG4379	NA	NA
UHGV-0159392_45	UniRef90	UniRef90_E7H532	Prophage MuSo2	NA
UHGV-0159392_45	eggNOG-mapper	742821.HMPREF9464_01820	Bacteriophage Mu Gp45 protein	NA
UHGV-0159392_45	Pfam	PF06890	Bacteriophage Mu Gp45 spike protein	Phage_Mu_Gp45
UHGV-0159392_45	NCBIFam	TIGR01644.1	phage baseplate assembly protein V	NA
UHGV-0159392_45	COG	COG4384	NA	NA
UHGV-0159392_45	Structural annotation	PF06890, MF_00216, TIGR01644, COG4384	NA	NA
UHGV-0159392_46	PHROG	phrog_180	tail protein	tail
UHGV-0159392_46	UniRef90	UniRef90_A0A4D8QDT1	Phage tail protein	NA
UHGV-0159392_46	eggNOG-mapper	570967.JMLV01000018_gene455	Phage protein GP46	NA
UHGV-0159392_46	Pfam	PF07409	NA	GP46
UHGV-0159392_46	COG	COG4381	NA	NA
UHGV-0159392_46	Structural annotation	PF07409, COG4381	NA	NA
UHGV-0159392_47	PHROG	phrog_6	baseplate protein	tail
UHGV-0159392_47	UniRef90	UniRef90_A0A5B7ZKF1	Baseplate J/gp47 family protein	NA
UHGV-0159392_47	eggNOG-mapper	742821.HMPREF9464_01817	Baseplate J family protein	NA
UHGV-0159392_47	Pfam	PF04865	Baseplate J-like protein	Baseplate_J
UHGV-0159392_47	COG	COG3299	NA	NA
UHGV-0159392_47	Structural annotation	PF04865, PF21379, MF_04102, TIGR02243, COG3299	NA	NA
UHGV-0159392_48	PHROG	phrog_203	tail protein	tail
UHGV-0159392_48	UniRef90	UniRef90_UPI000F60B3C5	NA	NA
UHGV-0159392_48	eggNOG-mapper	1278073.MYSTI_01917	NA	NA
UHGV-0159392_48	Pfam	PF10076	Bacteriophage Mu-like, Gp48	Phage_Mu_Gp48
UHGV-0159392_48	COG	COG3778	NA	NA
UHGV-0159392_48	Structural annotation	PF10076, COG3778	NA	NA
UHGV-0159392_49	PHROG	phrog_19618	tail collar protein	tail
UHGV-0159392_49	UniRef90	UniRef90_UPI001C0FAC9B	tail fiber protein	NA
UHGV-0159392_49	eggNOG-mapper	556269.ACDQ01000009_gene1944	Phage Tail Collar Domain	NA
UHGV-0159392_49	Pfam	PF07484	Phage Tail Collar Domain	Collar
UHGV-0159392_49	COG	COG4675	Phage tail collar domain	NA
UHGV-0159392_49	Structural annotation	PF07484, COG4675	NA	NA