UHGV-0159450

Genome information

Genome length 40,386 bps

CDS count 58

Completeness 89.17% (medium-quality)

geNomad score 0.9706

Prediction confidence Confident

Genome information
Genome ID	UHGV-0159450
vOTU ID	vOTU-018242
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_479013
BioSample	SAMN06115490
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	89.17% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	Yes
CheckV viral markers	30
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9706
Virus hallmark genes (geNomad)	12
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	66.67
Jumbo phage	No

Genome content
Genome length	40,386 bps
GC content	55.46%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	58
CDS density	93.78%
Average CDS length	656.79 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0159450_1	KOfam	K14059	int; integrase	NA
UHGV-0159450_1	PHROG	phrog_1	integrase	integration and excision
UHGV-0159450_1	UniRef90	UniRef90_A0A396Q548	Site-specific integrase	NA
UHGV-0159450_1	eggNOG-mapper	1408437.JNJN01000054_gene2088	DNA integration	NA
UHGV-0159450_1	Pfam	PF14659	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
UHGV-0159450_1	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0159450_1	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0159450_1	Structural annotation	PF00589, PF14659, MF_02055, TIGR02224, COG4974	NA	NA
UHGV-0159450_2	UniRef90	UniRef90_A0A417HNW0	TerB_N domain-containing protein	NA
UHGV-0159450_2	eggNOG-mapper	941824.TCEL_02254	TerB N-terminal domain	NA
UHGV-0159450_2	Pfam	PF13208	TerB N-terminal domain	TerB_N
UHGV-0159450_2	COG	COG4103	Tellurite resistance protein TerB	NA
UHGV-0159450_3	KOfam	K01356	lexA; repressor LexA [EC:3.4.21.88]	NA
UHGV-0159450_3	PHROG	phrog_4	transcriptional repressor	transcription regulation
UHGV-0159450_3	UniRef90	UniRef90_A0A417ISZ5	Helix-turn-helix domain-containing protein	NA
UHGV-0159450_3	eggNOG-mapper	1123230.ARQJ01000006_gene2611	Peptidase S24-like	NA
UHGV-0159450_3	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0159450_3	Pfam	PF00717	Peptidase S24-like	Peptidase_S24
UHGV-0159450_3	COG	COG1974	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	NA
UHGV-0159450_3	Structural annotation	PF00717, PF01381, MF_00015, TIGR00498, COG1974	NA	NA
UHGV-0159450_4	UniRef90	UniRef90_A0A417IT45	NA	NA
UHGV-0159450_4	eggNOG-mapper	562981.HMPREF0428_01421	NA	NA
UHGV-0159450_4	Pfam	PF05339	NA	DUF739
UHGV-0159450_4	COG	COG3655	DNA-binding transcriptional regulator, XRE family	NA
UHGV-0159450_4	Structural annotation	PF05339, NF002773, COG1476	NA	NA
UHGV-0159450_6	UniRef90	UniRef90_A0A396QPQ5	DNA-binding protein	NA
UHGV-0159450_6	Pfam	PF12728	Helix-turn-helix domain	HTH_17
UHGV-0159450_7	KOfam	K13583	gcrA; GcrA cell cycle regulator	NA
UHGV-0159450_7	Structural annotation	PF07750, NF040595, COG5352	NA	NA
UHGV-0159450_9	KOfam	K19171	dndD; DNA sulfur modification protein DndD	NA
UHGV-0159450_9	PHROG	phrog_77	SbcC-like subunit of palindrome specific endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0159450_9	UniRef90	UniRef90_A0A3E2XY48	AAA_23 domain-containing protein	NA
UHGV-0159450_9	eggNOG-mapper	1203606.HMPREF1526_00309	nuclear chromosome segregation	NA
UHGV-0159450_9	Pfam	PF13476	AAA domain	AAA_23
UHGV-0159450_9	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-0159450_9	Structural annotation	PF02463, MF_00449, NF041034, COG0419	NA	NA
UHGV-0159450_10	PHROG	phrog_862	NA	unknown function
UHGV-0159450_10	eggNOG-mapper	1203606.HMPREF1526_00310	NA	NA
UHGV-0159450_10	Structural annotation	PF05037, COG2965	NA	NA
UHGV-0159450_11	KOfam	K06167	phnP; phosphoribosyl 1,2-cyclic phosphate phosphodiesterase [EC:3.1.4.55]	NA
UHGV-0159450_11	PHROG	phrog_392	metal-dependent hydrolase	other
UHGV-0159450_11	UniRef90	UniRef90_A0A3E2XZ56	MBL fold metallo-hydrolase	NA
UHGV-0159450_11	eggNOG-mapper	1203606.HMPREF1526_00311	Metallo-beta-lactamase superfamily	NA
UHGV-0159450_11	Pfam	PF12706	Beta-lactamase superfamily domain	Lactamase_B_2
UHGV-0159450_11	COG	COG1235	Phosphoribosyl 1,2-cyclic phosphate phosphodiesterase	NA
UHGV-0159450_11	Structural annotation	PF02112, MF_01818, NF041851, COG1234	NA	NA
UHGV-0159450_13	PHROG	phrog_997	replication terminator	DNA, RNA and nucleotide metabolism
UHGV-0159450_13	UniRef90	UniRef90_A0A316QIB2	Replication terminator protein	NA
UHGV-0159450_13	eggNOG-mapper	889378.Spiaf_1591	NA	NA
UHGV-0159450_14	PHROG	phrog_1029	NA	unknown function
UHGV-0159450_14	UniRef90	UniRef90_A0A3D5WKT6	Peptidase S59 domain-containing protein	NA
UHGV-0159450_14	eggNOG-mapper	1298920.KI911353_gene2718	NA	NA
UHGV-0159450_14	Structural annotation	PF10065, COG5532	NA	NA
UHGV-0159450_15	PHROG	phrog_2562	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0159450_15	UniRef90	UniRef90_A0A417TSI7	NA	NA
UHGV-0159450_15	eggNOG-mapper	1231377.C426_1964	NA	NA
UHGV-0159450_15	Pfam	PF14297	Lin1244/Lin1753-like, N-terminal	Lin1244_N
UHGV-0159450_15	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0159450_18	KOfam	K00571	E2.1.1.72; site-specific DNA-methyltransferase (adenine-specific) [EC:2.1.1.72]	NA
UHGV-0159450_18	PHROG	phrog_23224	DNA methyltransferase	other
UHGV-0159450_18	UniRef90	UniRef90_A0A417TSH5	Methyltransferase	NA
UHGV-0159450_18	eggNOG-mapper	718252.FP2_06750	DNA methylase	NA
UHGV-0159450_18	PADLOC	MTase_II_00172	Type II methyltransferase	RM
UHGV-0159450_18	Pfam	PF01555	DNA methylase	N6_N4_Mtase
UHGV-0159450_18	COG	COG0863	DNA modification methylase	NA
UHGV-0159450_18	Structural annotation	PF01555, NF010253, COG0863	NA	NA
UHGV-0159450_21	PHROG	phrog_3777	NA	unknown function
UHGV-0159450_21	UniRef90	UniRef90_A0A417IT31	NA	NA
UHGV-0159450_21	eggNOG-mapper	767817.Desgi_3545	NA	NA
UHGV-0159450_21	Pfam	PF12957	NA	DUF3846
UHGV-0159450_21	COG	COG4734	Antirestriction protein ArdA	NA
UHGV-0159450_21	Structural annotation	PF12957	NA	NA
UHGV-0159450_22	PHROG	phrog_22740	NA	unknown function
UHGV-0159450_22	UniRef90	UniRef90_A0A2X2UEM9	DNA N-6-adenine-methyltransferase of bacteriophage	NA
UHGV-0159450_22	eggNOG-mapper	411468.CLOSCI_00567	DNA N-6-adenine-methyltransferase	NA
UHGV-0159450_22	PADLOC	oMTase_00015	orphan methyltransferase	RM
UHGV-0159450_22	Pfam	PF05869	DNA N-6-adenine-methyltransferase (Dam)	Dam
UHGV-0159450_22	Structural annotation	PF05869, TIGR01712	NA	NA
UHGV-0159450_24	eggNOG-mapper	742738.HMPREF9460_02503	NA	NA
UHGV-0159450_24	Structural annotation	PF06530, TIGR01636	NA	NA
UHGV-0159450_25	PHROG	phrog_3634	NA	unknown function
UHGV-0159450_25	eggNOG-mapper	411459.RUMOBE_00941	COG NOG22561 non supervised orthologous group	NA
UHGV-0159450_25	COG	COG0457	Tetratricopeptide (TPR) repeat	NA
UHGV-0159450_26	KOfam	K07474	xtmA; phage terminase small subunit	NA
UHGV-0159450_26	PHROG	phrog_51	terminase small subunit	head and packaging
UHGV-0159450_26	UniRef90	UniRef90_A0A3E2XYK7	Terminase small subunit	NA
UHGV-0159450_26	eggNOG-mapper	702450.CUW_0530	Terminase Small Subunit	NA
UHGV-0159450_26	Pfam	PF03592	Terminase small subunit	Terminase_2
UHGV-0159450_26	COG	COG3728	Phage terminase, small subunit	NA
UHGV-0159450_26	Structural annotation	PF03592, COG3728	NA	NA
UHGV-0159450_27	PHROG	phrog_30251	terminase large subunit	head and packaging
UHGV-0159450_27	UniRef90	UniRef90_A0A845MZ56	Phage terminase large subunit	NA
UHGV-0159450_27	eggNOG-mapper	1408437.JNJN01000045_gene596	TIGRFAM Phage	NA
UHGV-0159450_27	NCBIFam	TIGR01630.1	phage terminase large subunit	NA
UHGV-0159450_27	COG	COG5410	NA	NA
UHGV-0159450_27	Structural annotation	PF17289, PF03237, MF_04147, NF033889, COG5410, COG5362	NA	NA
UHGV-0159450_28	PHROG	phrog_64	portal protein	head and packaging
UHGV-0159450_28	UniRef90	UniRef90_A0A417BZ11	Phage portal protein	NA
UHGV-0159450_28	eggNOG-mapper	1408437.JNJN01000045_gene595	Phage portal protein, SPP1 Gp6-like	NA
UHGV-0159450_28	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0159450_28	NCBIFam	TIGR01538.1	phage portal protein	NA
UHGV-0159450_28	Structural annotation	PF05133, MF_04120, TIGR01538, COG5511	NA	NA
UHGV-0159450_29	PHROG	phrog_115	minor head protein	head and packaging
UHGV-0159450_29	UniRef90	UniRef90_A0A3E2XXY5	Phage_Mu_F domain-containing protein	NA
UHGV-0159450_29	eggNOG-mapper	1408437.JNJN01000045_gene594	head morphogenesis protein, SPP1 gp7 family	NA
UHGV-0159450_29	Pfam	PF04233	Phage Mu protein F like protein	Phage_Mu_F
UHGV-0159450_29	NCBIFam	TIGR01641.1	minor capsid protein	NA
UHGV-0159450_29	COG	COG2369	NA	NA
UHGV-0159450_29	Structural annotation	PF04233, PF18825, TIGR01641, COG2369	NA	NA
UHGV-0159450_30	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-0159450_30	UniRef90	UniRef90_UPI0004E27E71	phage scaffolding protein	NA
UHGV-0159450_30	eggNOG-mapper	1408437.JNJN01000045_gene593	Phage minor structural protein GP20	NA
UHGV-0159450_30	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-0159450_30	Structural annotation	PF06810	NA	NA
UHGV-0159450_31	PHROG	phrog_212	major head protein	head and packaging
UHGV-0159450_31	UniRef90	UniRef90_A0A3E2XZN2	Phage capsid protein	NA
UHGV-0159450_31	eggNOG-mapper	1408437.JNJN01000045_gene592	NA	NA
UHGV-0159450_31	Structural annotation	PF05065, MF_04119, NF041162, COG4653	NA	NA
UHGV-0159450_32	eggNOG-mapper	935836.JAEL01000086_gene51	NA	NA
UHGV-0159450_33	PHROG	phrog_132	head-tail adaptor	connector
UHGV-0159450_33	UniRef90	UniRef90_A0A6N2R673	Phage gp6-like head-tail connector protein	NA
UHGV-0159450_33	eggNOG-mapper	97138.C820_00227	Phage gp6-like head-tail connector protein	NA
UHGV-0159450_33	Structural annotation	PF05135	NA	NA
UHGV-0159450_34	PHROG	phrog_615	head-tail adaptor	connector
UHGV-0159450_34	UniRef90	UniRef90_A0A385T4K8	ABC transporter ATP-binding protein	NA
UHGV-0159450_34	eggNOG-mapper	1408437.JNJN01000045_gene589	NA	NA
UHGV-0159450_34	Structural annotation	PF12206, COG5614	NA	NA
UHGV-0159450_35	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0159450_35	UniRef90	UniRef90_A0A396Q518	HK97 gp10 family phage protein	NA
UHGV-0159450_35	eggNOG-mapper	1408437.JNJN01000045_gene588	Bacteriophage HK97-gp10, putative tail-component	NA
UHGV-0159450_35	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-0159450_35	Structural annotation	PF04883, TIGR01725, COG5005	NA	NA
UHGV-0159450_36	PHROG	phrog_525	NA	unknown function
UHGV-0159450_36	UniRef90	UniRef90_T3D6E7	Putative phage protein	NA
UHGV-0159450_36	eggNOG-mapper	1408437.JNJN01000045_gene587	NA	NA
UHGV-0159450_36	Pfam	PF20765	NA	DUF6838
UHGV-0159450_36	Structural annotation	PF20765, COG5003	NA	NA
UHGV-0159450_37	PHROG	phrog_966	NA	unknown function
UHGV-0159450_37	eggNOG-mapper	1408437.JNJN01000045_gene586	NA	NA
UHGV-0159450_38	PHROG	phrog_279	tail sheath	tail
UHGV-0159450_38	UniRef90	UniRef90_A0A3E2XXT6	Phage tail protein	NA
UHGV-0159450_38	eggNOG-mapper	1408437.JNJN01000045_gene585	Phage tail sheath C-terminal domain	NA
UHGV-0159450_38	Pfam	PF17481	Phage tail sheath protein beta-sandwich domain	Phage_sheath_1N
UHGV-0159450_38	Pfam	PF04984	Phage tail sheath protein subtilisin-like domain	Phage_sheath_1
UHGV-0159450_38	Pfam	PF17482	Phage tail sheath C-terminal domain	Phage_sheath_1C
UHGV-0159450_38	Structural annotation	PF17482, PF04984, PF17481, COG4386	NA	NA
UHGV-0159450_39	PHROG	phrog_365	tail protein	tail
UHGV-0159450_39	UniRef90	UniRef90_UPI00164A7994	phage tail tube protein	NA
UHGV-0159450_39	eggNOG-mapper	1408437.JNJN01000045_gene584	Phage tail tube protein	NA
UHGV-0159450_39	Pfam	PF09393	Phage tail tube protein	DUF2001
UHGV-0159450_39	Structural annotation	PF09393, TIGR02241, COG3498	NA	NA
UHGV-0159450_40	PHROG	phrog_389	tail protein XkdN-like	tail
UHGV-0159450_40	UniRef90	UniRef90_A0A3E2XXX4	Phage portal protein	NA
UHGV-0159450_40	eggNOG-mapper	1408437.JNJN01000045_gene583	Phage XkdN-like tail assembly chaperone protein, TAC	NA
UHGV-0159450_40	Pfam	PF08890	Phage XkdN-like tail assembly chaperone protein, TAC	Phage_TAC_5
UHGV-0159450_40	Structural annotation	PF08890, COG4518	NA	NA
UHGV-0159450_41	PHROG	phrog_1068	tail length tape measure protein	tail
UHGV-0159450_41	UniRef90	UniRef90_A0A417BYU2	TMP_3 domain-containing protein	NA
UHGV-0159450_41	eggNOG-mapper	1408437.JNJN01000045_gene581	tape measure	NA
UHGV-0159450_41	Pfam	PF20155	Tape measure protein	TMP_3
UHGV-0159450_41	NCBIFam	TIGR02675.1	tape measure protein	NA
UHGV-0159450_41	COG	COG5281	Phage-related minor tail protein	NA
UHGV-0159450_41	Structural annotation	PF20155, COG3941	NA	NA
UHGV-0159450_42	PHROG	phrog_380	endolysin	lysis
UHGV-0159450_42	UniRef90	UniRef90_A0A417IT44	LysM peptidoglycan-binding domain-containing protein	NA
UHGV-0159450_42	eggNOG-mapper	1408437.JNJN01000045_gene580	LysM domain	NA
UHGV-0159450_42	Pfam	PF01476	LysM domain	LysM
UHGV-0159450_42	COG	COG1652	Cytoplasmic potassium-binding protein Kbp/XkdP/YgaU, contains LysM domain	NA
UHGV-0159450_42	Structural annotation	PF21821, TIGR02126, COG3499	NA	NA
UHGV-0159450_43	KOfam	K19304	mepM; murein DD-endopeptidase [EC:3.4.24.-]	NA
UHGV-0159450_43	PHROG	phrog_400	tail protein	tail
UHGV-0159450_43	UniRef90	UniRef90_A0A417IT88	Peptidase_M23 domain-containing protein	NA
UHGV-0159450_43	eggNOG-mapper	1408437.JNJN01000045_gene579	PFAM Phage late control gene D protein (GPD)	NA
UHGV-0159450_43	Pfam	PF01551	Peptidase family M23	Peptidase_M23
UHGV-0159450_43	COG	COG4193	Beta- N-acetylglucosaminidase	NA
UHGV-0159450_43	Structural annotation	PF01551, PF05954, MF_02071, NF040883, NF033848, TIGR00413, COG0739, COG4379, COG3584	NA	NA
UHGV-0159450_44	PHROG	phrog_579	NA	unknown function
UHGV-0159450_44	UniRef90	UniRef90_A0A417BZ23	NA	NA
UHGV-0159450_44	eggNOG-mapper	1352230.S6C459_9CAUD	NA	NA
UHGV-0159450_44	Pfam	PF10844	NA	DUF2577
UHGV-0159450_44	Structural annotation	PF10844	NA	NA
UHGV-0159450_45	PHROG	phrog_120	baseplate protein	tail
UHGV-0159450_45	UniRef90	UniRef90_A0A3E2XZ30	NA	NA
UHGV-0159450_45	eggNOG-mapper	1408437.JNJN01000045_gene577	NA	NA
UHGV-0159450_45	Pfam	PF10934	NA	DUF2634
UHGV-0159450_45	COG	COG3628	Phage baseplate assembly protein W	NA
UHGV-0159450_45	Structural annotation	PF10934, TIGR03357, COG3628	NA	NA
UHGV-0159450_46	PHROG	phrog_1608	tail protein	tail
UHGV-0159450_46	UniRef90	UniRef90_A0A417BYX8	Phage tail protein	NA
UHGV-0159450_46	eggNOG-mapper	1408437.JNJN01000045_gene576	Baseplate J-like protein	NA
UHGV-0159450_46	Pfam	PF04865	Baseplate J-like protein	Baseplate_J
UHGV-0159450_46	COG	COG3299	NA	NA
UHGV-0159450_46	Structural annotation	PF04865, PF21379, MF_04102, TIGR02243, COG3299	NA	NA
UHGV-0159450_47	PHROG	phrog_521	tail protein	tail
UHGV-0159450_47	UniRef90	UniRef90_A0A417BYZ7	NA	NA
UHGV-0159450_47	eggNOG-mapper	1408437.JNJN01000045_gene575	NA	NA
UHGV-0159450_47	Pfam	PF10076	Bacteriophage Mu-like, Gp48	Phage_Mu_Gp48
UHGV-0159450_47	COG	COG4385	Bacteriophage P2-related tail formation protein	NA
UHGV-0159450_47	Structural annotation	PF10076, TIGR02242, COG3778	NA	NA
UHGV-0159450_48	eggNOG-mapper	1408437.JNJN01000030_gene1051	cellulose 1,4-beta-cellobiosidase activity	NA
UHGV-0159450_48	COG	COG5301	Phage-related tail fiber protein	NA
UHGV-0159450_48	Structural annotation	PF08931	NA	NA
UHGV-0159450_50	eggNOG-mapper	1232443.BAIA02000008_gene661	NA	NA
UHGV-0159450_54	KOfam	K04763	xerD; integrase/recombinase XerD	NA
UHGV-0159450_54	PHROG	phrog_1	integrase	integration and excision
UHGV-0159450_54	UniRef90	UniRef90_A0A417BZS8	Integrase	NA
UHGV-0159450_54	eggNOG-mapper	1235835.C814_01938	Belongs to the 'phage' integrase family	NA
UHGV-0159450_54	Pfam	PF13495	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_4
UHGV-0159450_54	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0159450_54	COG	COG4974	Site-specific recombinase XerD	NA
UHGV-0159450_54	Structural annotation	PF00589, PF02899, MF_01807, TIGR02224, COG4973	NA	NA
UHGV-0159450_55	PHROG	phrog_199	holin	lysis
UHGV-0159450_55	UniRef90	UniRef90_A0A417BZX9	Holin	NA
UHGV-0159450_55	eggNOG-mapper	1121344.JHZO01000003_gene684	toxin secretion phage lysis holin	NA
UHGV-0159450_55	Pfam	PF05105	Bacteriophage holin family	Phage_holin_4_1
UHGV-0159450_55	NCBIFam	TIGR01593.1	toxin secretion/phage lysis holin	NA
UHGV-0159450_55	COG	COG4824	Phage-related holin (Lysis protein)	NA
UHGV-0159450_55	Structural annotation	PF05105, TIGR01593, COG4824	NA	NA
UHGV-0159450_56	KOfam	K01447	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0159450_56	PHROG	phrog_670	endolysin	lysis
UHGV-0159450_56	UniRef90	UniRef90_A0A417BYT1	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0159450_56	eggNOG-mapper	1120998.AUFC01000016_gene8	Ami_2	NA
UHGV-0159450_56	Pfam	PF01510	N-acetylmuramoyl-L-alanine amidase	Amidase_2
UHGV-0159450_56	COG	COG5632	N-acetylmuramoyl-L-alanine amidase CwlA	NA
UHGV-0159450_56	Structural annotation	PF01510, MF_04111, NF008758, COG5632	NA	NA