UHGV-0159452

Genome information

Genome length 20,768 bps

CDS count 30

Completeness 56.51% (medium-quality)

geNomad score 0.9666

Prediction confidence Confident

Genome information
Genome ID	UHGV-0159452
vOTU ID	vOTU-027917
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_479031
BioSample	SAMN06115490
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	56.51% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	9
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9666
Virus hallmark genes (geNomad)	6
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Uncertain - viral or bacterial
viralVerify score	-4.57
Jumbo phage	No

Genome content
Genome length	20,768 bps
GC content	30.25%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	30
CDS density	92.13%
Average CDS length	642.80 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0159452_2	PHROG	phrog_541	head-tail adaptor	connector
UHGV-0159452_2	eggNOG-mapper	394503.Ccel_3289	NA	NA
UHGV-0159452_3	PHROG	phrog_8710	NA	unknown function
UHGV-0159452_3	eggNOG-mapper	1151292.QEW_2430	NA	NA
UHGV-0159452_3	Structural annotation	PF10665, TIGR01563, COG5614	NA	NA
UHGV-0159452_4	PHROG	phrog_556	minor head protein	head and packaging
UHGV-0159452_4	eggNOG-mapper	585501.HMPREF6123_0831	NA	NA
UHGV-0159452_5	PHROG	phrog_2595	head-tail connector protein	connector
UHGV-0159452_5	eggNOG-mapper	1151292.QEW_2427	NA	NA
UHGV-0159452_5	Pfam	PF12691	Bacteriophage minor capsid protein	Minor_capsid_3
UHGV-0159452_5	Structural annotation	PF12691, COG5003	NA	NA
UHGV-0159452_6	PHROG	phrog_820	major tail protein	tail
UHGV-0159452_6	eggNOG-mapper	33035.JPJF01000093_gene2246	NA	NA
UHGV-0159452_6	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-0159452_7	PHROG	phrog_8300	NA	unknown function
UHGV-0159452_7	eggNOG-mapper	1151292.QEW_2425	NA	NA
UHGV-0159452_7	Structural annotation	PF06896	NA	NA
UHGV-0159452_8	PHROG	phrog_8355	NA	unknown function
UHGV-0159452_8	UniRef90	UniRef90_UPI001D0309B6	bacteriophage Gp15 family protein	NA
UHGV-0159452_8	eggNOG-mapper	1415775.U729_2613	NA	NA
UHGV-0159452_8	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-0159452_8	Structural annotation	PF06854	NA	NA
UHGV-0159452_9	UniRef90	UniRef90_R7F982	Conserved domain protein	NA
UHGV-0159452_9	eggNOG-mapper	1540257.JQMW01000013_gene732	Mu-like prophage protein Com	NA
UHGV-0159452_9	Structural annotation	PF10122, COG4416	NA	NA
UHGV-0159452_10	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-0159452_10	UniRef90	UniRef90_A0A174SV65	Phage-like protein	NA
UHGV-0159452_10	eggNOG-mapper	33035.JPJF01000093_gene2243	phage tail tape measure protein	NA
UHGV-0159452_10	COG	COG3941	Phage tail tape-measure protein, controls tail length	NA
UHGV-0159452_10	Structural annotation	PF20155, TIGR01760, COG3941	NA	NA
UHGV-0159452_11	PHROG	phrog_1194	NA	unknown function
UHGV-0159452_11	UniRef90	UniRef90_R7F8R7	Putative phage protein	NA
UHGV-0159452_11	eggNOG-mapper	1122918.KB907248_gene4488	NA	NA
UHGV-0159452_11	Pfam	PF20458	NA	DUF6711
UHGV-0159452_11	Structural annotation	PF20458, TIGR02126, COG3499	NA	NA
UHGV-0159452_12	PHROG	phrog_6616	tail protein	tail
UHGV-0159452_12	UniRef90	UniRef90_R7F857	Phage minor structural protein	NA
UHGV-0159452_12	eggNOG-mapper	272562.CA_C0063	Prophage endopeptidase tail	NA
UHGV-0159452_12	COG	COG4926	Phage-related protein	NA
UHGV-0159452_13	PHROG	phrog_9116	tail protein	tail
UHGV-0159452_13	UniRef90	UniRef90_A0A3D1PJI0	Collar domain-containing protein	NA
UHGV-0159452_13	eggNOG-mapper	694427.Palpr_1970	tail collar domain protein	NA
UHGV-0159452_13	Pfam	PF07484	Phage Tail Collar Domain	Collar
UHGV-0159452_13	COG	COG4675	Phage tail collar domain	NA
UHGV-0159452_14	Structural annotation	PF08948, MF_01537, NF007541, COG3123	NA	NA
UHGV-0159452_15	PHROG	phrog_5302	tail protein	tail
UHGV-0159452_15	eggNOG-mapper	411470.RUMGNA_00248	Phage tail-collar fibre protein	NA
UHGV-0159452_15	COG	COG5301	Phage-related tail fiber protein	NA
UHGV-0159452_16	KOfam	K00986	ltrA; RNA-directed DNA polymerase [EC:2.7.7.49]	NA
UHGV-0159452_16	PHROG	phrog_1423	Reverse transcriptase	DNA, RNA and nucleotide metabolism
UHGV-0159452_16	UniRef90	UniRef90_A0A845LQ98	Reverse transcriptase	NA
UHGV-0159452_16	eggNOG-mapper	755164.D6PSR5_9CAUD	RNA-directed DNA polymerase activity	NA
UHGV-0159452_16	PADLOC	icity0040	RT (reverse transcriptase)	CRISPR-CAS
UHGV-0159452_16	Pfam	PF00078	Reverse transcriptase (RNA-dependent DNA polymerase)	RVT_1
UHGV-0159452_16	Structural annotation	PF00078, MF_01390, TIGR04416, COG3344	NA	NA
UHGV-0159452_18	NCBIFam	NF040910.1	CD1375 family protein	NA
UHGV-0159452_20	PHROG	phrog_918	NA	unknown function
UHGV-0159452_20	UniRef90	UniRef90_UPI0008A5D446	NA	NA
UHGV-0159452_20	eggNOG-mapper	1504823.CCMM01000008_gene1021	NA	NA
UHGV-0159452_20	Pfam	PF19791	NA	DUF6275
UHGV-0159452_20	Structural annotation	PF19791	NA	NA
UHGV-0159452_21	PHROG	phrog_2459	NA	unknown function
UHGV-0159452_21	UniRef90	UniRef90_A0A1Q6LC62	SH3b domain-containing protein	NA
UHGV-0159452_21	eggNOG-mapper	411463.EUBVEN_00393	Papain-like cysteine protease AvrRpt2	NA
UHGV-0159452_21	Pfam	PF13529	Peptidase_C39 like family	Peptidase_C39_2
UHGV-0159452_21	Pfam	PF08239	Bacterial SH3 domain	SH3_3
UHGV-0159452_21	COG	COG0768	Cell division protein FtsI, peptidoglycan transpeptidase (Penicillin-binding protein 2)	NA
UHGV-0159452_21	Structural annotation	PF03412, PF08239, NF040678, COG3807, COG3271	NA	NA
UHGV-0159452_22	PHROG	phrog_2329	NA	unknown function
UHGV-0159452_23	PHROG	phrog_10390	NA	unknown function
UHGV-0159452_23	UniRef90	UniRef90_A0A1F8ULN8	NA	NA
UHGV-0159452_23	eggNOG-mapper	86416.Clopa_0092	Phage-associated protein	NA
UHGV-0159452_23	Pfam	PF13274	Antitoxin SocA-like, Panacea domain	SocA_Panacea
UHGV-0159452_23	COG	COG3600	NA	NA
UHGV-0159452_23	Structural annotation	PF13274, COG3600	NA	NA
UHGV-0159452_24	eggNOG-mapper	390333.Ldb1186	NA	NA
UHGV-0159452_25	Structural annotation	PF02583, COG1937	NA	NA
UHGV-0159452_26	KOfam	K22299	rghR; HTH-type transcriptional regulator, competence development regulator	NA
UHGV-0159452_26	PHROG	phrog_3	transcriptional repressor	transcription regulation
UHGV-0159452_26	UniRef90	UniRef90_R5Z201	Transcriptional regulator	NA
UHGV-0159452_26	eggNOG-mapper	521460.Athe_2435	PFAM helix-turn-helix domain protein	NA
UHGV-0159452_26	PADLOC	retron_type_VI_hth_cluster2_1	NA	Retron
UHGV-0159452_26	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0159452_26	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0159452_26	Structural annotation	PF01381, NF041951, COG1476	NA	NA
UHGV-0159452_27	UniRef90	UniRef90_R6I264	HTH cro/C1-type domain-containing protein	NA
UHGV-0159452_27	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-0159452_27	Structural annotation	PF01381, NF010465, COG1476	NA	NA
UHGV-0159452_29	KOfam	K00170	porB; pyruvate ferredoxin oxidoreductase beta subunit [EC:1.2.7.1]	NA
UHGV-0159452_29	UniRef90	UniRef90_R5Z364	Thiamine pyrophosphate TPP-binding domain-containing protein	NA
UHGV-0159452_29	eggNOG-mapper	1195236.CTER_1022	Thiamine pyrophosphate enzyme, C-terminal TPP binding domain	NA
UHGV-0159452_29	Pfam	PF02775	Thiamine pyrophosphate enzyme, C-terminal TPP binding domain	TPP_enzyme_C
UHGV-0159452_29	COG	COG1013	Pyruvate:ferredoxin oxidoreductase or related 2-oxoacid:ferredoxin oxidoreductase, beta subunit	NA
UHGV-0159452_30	KOfam	K01872	AARS, alaS; alanyl-tRNA synthetase [EC:6.1.1.7]	NA
UHGV-0159452_30	PHROG	phrog_28604	NA	unknown function
UHGV-0159452_30	UniRef90	UniRef90_A0A3C1WUG3	Alanine--tRNA ligase (Fragment)	NA
UHGV-0159452_30	eggNOG-mapper	515620.EUBELI_00966	Catalyzes the attachment of alanine to tRNA(Ala) in a two-step reaction alanine is first activated by ATP to form Ala- AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain	NA
UHGV-0159452_30	Pfam	PF01411	tRNA synthetases class II (A)	tRNA-synt_2c
UHGV-0159452_30	Pfam	PF17147	Pyruvate:ferredoxin oxidoreductase core domain II	PFOR_II
UHGV-0159452_30	COG	COG0013	Alanyl-tRNA synthetase	NA