UHGV-0159602

Genome information

Genome length 28,396 bps

CDS count 37

Completeness 72.57% (medium-quality)

geNomad score 0.9697

Prediction confidence Confident

Genome information
Genome ID	UHGV-0159602
vOTU ID	vOTU-027926
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_479182
BioSample	NA
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	72.57% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	9
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9697
Virus hallmark genes (geNomad)	7
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	17.93
Jumbo phage	No

Genome content
Genome length	28,396 bps
GC content	57.84%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	37
CDS density	90.96%
Average CDS length	700.30 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0159602_2	PHROG	phrog_424	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
UHGV-0159602_2	eggNOG-mapper	445972.ANACOL_01819	Phosphoadenosine phosphosulfate reductase family	NA
UHGV-0159602_2	COG	COG0175	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	NA
UHGV-0159602_2	Structural annotation	PF01507, MF_00064, TIGR02057, COG0175	NA	NA
UHGV-0159602_4	KOfam	K18830	pezA; HTH-type transcriptional regulator / antitoxin PezA	NA
UHGV-0159602_4	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0159602_4	UniRef90	UniRef90_A0A352RPP9	XRE family transcriptional regulator	NA
UHGV-0159602_4	eggNOG-mapper	1123511.KB905839_gene493	Helix-turn-helix XRE-family like proteins	NA
UHGV-0159602_4	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0159602_4	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0159602_4	Structural annotation	PF01381, NF041951, COG1476	NA	NA
UHGV-0159602_5	PHROG	phrog_2412	NA	unknown function
UHGV-0159602_5	eggNOG-mapper	742738.HMPREF9460_02504	NA	NA
UHGV-0159602_6	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0159602_6	PHROG	phrog_3717	terminase large subunit	head and packaging
UHGV-0159602_6	UniRef90	UniRef90_UPI00164D9352	PBSX family phage terminase large subunit	NA
UHGV-0159602_6	eggNOG-mapper	665956.HMPREF1032_02957	Phage terminase, large subunit, PBSX family	NA
UHGV-0159602_6	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-0159602_6	Pfam	PF17288	Terminase RNAseH like domain	Terminase_3C
UHGV-0159602_6	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0159602_6	COG	COG1783	Phage terminase large subunit	NA
UHGV-0159602_6	Structural annotation	PF04466, PF17288, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0159602_8	PHROG	phrog_533	portal protein	head and packaging
UHGV-0159602_8	UniRef90	UniRef90_UPI000680A1DB	phage portal protein	NA
UHGV-0159602_8	eggNOG-mapper	693746.OBV_18040	NA	NA
UHGV-0159602_8	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-0159602_9	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0159602_9	UniRef90	UniRef90_UPI0006814CA4	phage minor capsid protein	NA
UHGV-0159602_9	eggNOG-mapper	693746.OBV_18050	Phage minor capsid protein 2	NA
UHGV-0159602_9	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0159602_9	Pfam	PF18451	Contact-dependent growth inhibition CdiA C-terminal domain	CdiA_C
UHGV-0159602_9	COG	COG2369	NA	NA
UHGV-0159602_9	Structural annotation	PF06152	NA	NA
UHGV-0159602_10	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-0159602_10	UniRef90	UniRef90_UPI00164D9F94	phage scaffolding protein	NA
UHGV-0159602_10	eggNOG-mapper	693746.OBV_18080	COG NOG36366 non supervised orthologous group	NA
UHGV-0159602_10	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-0159602_10	Structural annotation	PF06810	NA	NA
UHGV-0159602_11	PHROG	phrog_422	major head protein	head and packaging
UHGV-0159602_11	UniRef90	UniRef90_W0U896	Phage major capsid protein	NA
UHGV-0159602_11	eggNOG-mapper	693746.OBV_18090	NA	NA
UHGV-0159602_11	Structural annotation	PF21703, MF_04119, TIGR04387, COG4834	NA	NA
UHGV-0159602_12	UniRef90	UniRef90_UPI00164D7D74	C2H2-type zinc finger protein	NA
UHGV-0159602_12	Pfam	PF05605	Drought induced 19 protein (Di19), zinc-binding	zf-Di19
UHGV-0159602_12	Structural annotation	PF05605	NA	NA
UHGV-0159602_13	PHROG	phrog_541	head-tail adaptor	connector
UHGV-0159602_13	eggNOG-mapper	693746.OBV_18110	NA	NA
UHGV-0159602_14	Structural annotation	PF20536, MF_01370, TIGR02126	NA	NA
UHGV-0159602_15	PHROG	phrog_556	minor head protein	head and packaging
UHGV-0159602_15	UniRef90	UniRef90_UPI00164EC49A	minor capsid protein	NA
UHGV-0159602_15	eggNOG-mapper	33035.JPJF01000106_gene3128	NA	NA
UHGV-0159602_15	Pfam	PF11114	Minor capsid protein	Minor_capsid_2
UHGV-0159602_15	Structural annotation	PF11114	NA	NA
UHGV-0159602_16	PHROG	phrog_3266	tail completion	connector
UHGV-0159602_16	eggNOG-mapper	693746.OBV_18140	NA	NA
UHGV-0159602_16	Structural annotation	PF08873	NA	NA
UHGV-0159602_17	PHROG	phrog_3099	NA	unknown function
UHGV-0159602_17	eggNOG-mapper	693746.OBV_18150	NA	NA
UHGV-0159602_17	Structural annotation	PF10772, TIGR02126, COG3499	NA	NA
UHGV-0159602_18	PHROG	phrog_11299	NA	unknown function
UHGV-0159602_18	eggNOG-mapper	693746.OBV_18160	NA	NA
UHGV-0159602_18	Structural annotation	PF10666	NA	NA
UHGV-0159602_19	PHROG	phrog_706	NA	unknown function
UHGV-0159602_19	UniRef90	UniRef90_UPI00164D7633	Gp15 family bacteriophage protein	NA
UHGV-0159602_19	eggNOG-mapper	693746.OBV_18170	Bacteriophage Gp15 protein	NA
UHGV-0159602_19	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-0159602_19	Structural annotation	PF06854	NA	NA
UHGV-0159602_20	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-0159602_20	UniRef90	UniRef90_A0A810PX76	Phage tail tape measure protein	NA
UHGV-0159602_20	eggNOG-mapper	1235797.C816_04182	SLT domain	NA
UHGV-0159602_20	COG	COG1511	NA	NA
UHGV-0159602_20	Structural annotation	PF05546, TIGR02559	NA	NA
UHGV-0159602_21	PHROG	phrog_1194	NA	unknown function
UHGV-0159602_21	eggNOG-mapper	1226322.HMPREF1545_00060	NA	NA
UHGV-0159602_21	Structural annotation	PF20458, TIGR01633, COG3499	NA	NA
UHGV-0159602_22	PHROG	phrog_13879	NA	unknown function
UHGV-0159602_22	eggNOG-mapper	693746.OBV_18210	NA	NA
UHGV-0159602_22	Structural annotation	PF14594, PF03256, NF033848, COG4379, COG5156	NA	NA
UHGV-0159602_23	PHROG	phrog_18725	NA	unknown function
UHGV-0159602_23	eggNOG-mapper	1226322.HMPREF1545_00062	NA	NA
UHGV-0159602_27	UniRef90	UniRef90_A0A1Y3X1Z8	Sigma70_r4 domain-containing protein	NA
UHGV-0159602_27	Pfam	PF13384	Homeodomain-like domain	HTH_23
UHGV-0159602_27	Pfam	PF04545	Sigma-70, region 4	Sigma70_r4
UHGV-0159602_27	NCBIFam	TIGR02937.1	sigma-70 family RNA polymerase sigma factor	NA
UHGV-0159602_27	COG	COG1191	DNA-directed RNA polymerase specialized sigma subunit	NA
UHGV-0159602_27	Structural annotation	PF00196, PF04545, NF006146, NF003257, COG2771	NA	NA
UHGV-0159602_29	PHROG	phrog_199	holin	lysis
UHGV-0159602_29	UniRef90	UniRef90_UPI001C033395	phage holin family protein	NA
UHGV-0159602_29	eggNOG-mapper	693746.OBV_24950	Bacteriophage holin family	NA
UHGV-0159602_29	Pfam	PF05105	Bacteriophage holin family	Phage_holin_4_1
UHGV-0159602_29	COG	COG4824	Phage-related holin (Lysis protein)	NA
UHGV-0159602_29	Structural annotation	PF05105, TIGR01593, COG4824	NA	NA
UHGV-0159602_30	UniRef90	UniRef90_A0A1T5AMW7	NAGPA domain-containing protein	NA
UHGV-0159602_30	Structural annotation	PF09992, COG4632	NA	NA
UHGV-0159602_31	PHROG	phrog_21357	endolysin	lysis
UHGV-0159602_31	UniRef90	UniRef90_A0A329UV62	Peptidase C51 domain-containing protein	NA
UHGV-0159602_31	eggNOG-mapper	243164.DET1070	SMART Glycoside hydrolase, family 25 subgroup	NA
UHGV-0159602_31	COG	COG1388	LysM repeat	NA
UHGV-0159602_31	Structural annotation	PF10030, TIGR02594, COG3942	NA	NA
UHGV-0159602_32	PHROG	phrog_21825	endolysin	lysis
UHGV-0159602_32	eggNOG-mapper	1519439.JPJG01000060_gene1899	Ami_2	NA
UHGV-0159602_32	COG	COG5632	N-acetylmuramoyl-L-alanine amidase CwlA	NA
UHGV-0159602_35	KOfam	K02448	norD; nitric oxide reductase NorD protein	NA
UHGV-0159602_35	UniRef90	UniRef90_D4KBT2	VWFA domain-containing protein	NA
UHGV-0159602_35	eggNOG-mapper	1519439.JPJG01000016_gene354	von Willebrand factor (vWF) type A domain	NA
UHGV-0159602_35	COG	COG4548	Nitric oxide reductase activation protein	NA
UHGV-0159602_36	KOfam	K04748	norQ; nitric oxide reductase NorQ protein	NA
UHGV-0159602_36	PHROG	phrog_249	porphyrin biosynthesis	moron, auxiliary metabolic gene and host takeover
UHGV-0159602_36	UniRef90	UniRef90_R5RZJ8	ATPase family	NA
UHGV-0159602_36	eggNOG-mapper	1519439.JPJG01000016_gene355	AAA domain (dynein-related subfamily)	NA
UHGV-0159602_36	Pfam	PF07728	AAA domain (dynein-related subfamily)	AAA_5
UHGV-0159602_36	COG	COG0714	MoxR-like ATPase	NA
UHGV-0159602_37	UniRef90	UniRef90_UPI001F3FC547	helix-turn-helix domain-containing protein	NA
UHGV-0159602_37	eggNOG-mapper	1519439.JPJG01000066_gene2398	Helix-turn-helix XRE-family like proteins	NA
UHGV-0159602_37	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA