UHGV-0159618

Genome information

Genome length 28,933 bps

CDS count 46

Completeness 55.83% (medium-quality)

geNomad score 0.9816

Prediction confidence Confident

Genome information
Genome ID	UHGV-0159618
vOTU ID	vOTU-027927
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_487683
BioSample	SAMN06110355
Country	Netherlands
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	55.83% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	13
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9816
Virus hallmark genes (geNomad)	8
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	18.81
Jumbo phage	No

Genome content
Genome length	28,933 bps
GC content	53.59%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	46
CDS density	92.53%
Average CDS length	585.52 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0159618_2	PHROG	phrog_28802	NA	unknown function
UHGV-0159618_2	Structural annotation	PF12510	NA	NA
UHGV-0159618_3	PHROG	phrog_20016	NA	unknown function
UHGV-0159618_3	UniRef90	UniRef90_A0A345BPX4	Carbohydrate binding domain/collagen triple helix repeat protein	NA
UHGV-0159618_3	eggNOG-mapper	1226322.HMPREF1545_00077	NA	NA
UHGV-0159618_3	Structural annotation	PF18573, NF033147	NA	NA
UHGV-0159618_4	PHROG	phrog_16490	NA	unknown function
UHGV-0159618_4	eggNOG-mapper	1408437.JNJN01000043_gene803	NA	NA
UHGV-0159618_5	PHROG	phrog_22984	NA	unknown function
UHGV-0159618_6	PHROG	phrog_21718	NA	unknown function
UHGV-0159618_6	eggNOG-mapper	397290.C810_05210	NA	NA
UHGV-0159618_7	PHROG	phrog_3754	NA	unknown function
UHGV-0159618_7	eggNOG-mapper	476272.RUMHYD_01764	NA	NA
UHGV-0159618_8	eggNOG-mapper	469378.Ccur_03010	NA	NA
UHGV-0159618_9	UniRef90	UniRef90_UPI00196212E2	NA	NA
UHGV-0159618_9	eggNOG-mapper	397291.C804_03513	NA	NA
UHGV-0159618_10	Structural annotation	PF01402, NF041793, COG4710	NA	NA
UHGV-0159618_11	UniRef90	UniRef90_A0A1H4G788	XPA protein C-terminus	NA
UHGV-0159618_11	eggNOG-mapper	877415.JNJQ01000015_gene473	NA	NA
UHGV-0159618_12	Structural annotation	PF07638, MF_00674, TIGR02954, COG1846	NA	NA
UHGV-0159618_13	eggNOG-mapper	411470.RUMGNA_00254	NA	NA
UHGV-0159618_15	UniRef90	UniRef90_K1TIU6	Protein containing SH3, type 3 domain protein	NA
UHGV-0159618_15	eggNOG-mapper	1444306.JFZC01000099_gene1162	Bacterial SH3 domain	NA
UHGV-0159618_15	Pfam	PF08239	Bacterial SH3 domain	SH3_3
UHGV-0159618_15	COG	COG3103	NA	NA
UHGV-0159618_15	Structural annotation	PF18342, PF05382, NF040670, COG4991	NA	NA
UHGV-0159618_17	UniRef90	UniRef90_UPI0018835F0C	collagen-like protein	NA
UHGV-0159618_17	eggNOG-mapper	476272.RUMHYD_00002	NA	NA
UHGV-0159618_19	Structural annotation	PF10651, PF07703, MF_04116, NF032891, COG4326	NA	NA
UHGV-0159618_20	PHROG	phrog_4311	minor head protein	head and packaging
UHGV-0159618_20	UniRef90	UniRef90_K1UCK4	Phage minor structural protein	NA
UHGV-0159618_20	eggNOG-mapper	935948.KE386495_gene1321	TIGRFAM phage minor structural protein	NA
UHGV-0159618_20	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-0159618_20	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-0159618_20	COG	COG4926	Phage-related protein	NA
UHGV-0159618_21	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-0159618_21	Structural annotation	PF20753, PF20195, TIGR01633, COG4722	NA	NA
UHGV-0159618_22	PHROG	phrog_28918	NA	unknown function
UHGV-0159618_22	eggNOG-mapper	1235800.C819_00476	tape measure	NA
UHGV-0159618_22	COG	COG3941	Phage tail tape-measure protein, controls tail length	NA
UHGV-0159618_23	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-0159618_23	eggNOG-mapper	913865.DOT_2893	tape measure	NA
UHGV-0159618_23	COG	COG3941	Phage tail tape-measure protein, controls tail length	NA
UHGV-0159618_23	Structural annotation	PF06791	NA	NA
UHGV-0159618_26	PHROG	phrog_885	major tail protein	tail
UHGV-0159618_26	eggNOG-mapper	561177.ANHYDRO_01415	NA	NA
UHGV-0159618_26	Structural annotation	PF06488, TIGR01603, COG5437	NA	NA
UHGV-0159618_27	Structural annotation	PF11367	NA	NA
UHGV-0159618_28	PHROG	phrog_17977	NA	unknown function
UHGV-0159618_28	UniRef90	UniRef90_A0A285PT57	Phage head-tail joining protein	NA
UHGV-0159618_28	Pfam	PF05521	Phage head-tail joining protein	Phage_H_T_join
UHGV-0159618_28	Structural annotation	PF07405, TIGR01563, COG5614	NA	NA
UHGV-0159618_30	PHROG	phrog_29	major head protein	head and packaging
UHGV-0159618_30	UniRef90	UniRef90_K1TJK6	Phage protein (Fragment)	NA
UHGV-0159618_30	eggNOG-mapper	1232443.BAIA02000078_gene29	Phage major capsid protein E	NA
UHGV-0159618_30	Pfam	PF03864	Phage major capsid protein E	Phage_cap_E
UHGV-0159618_30	Pfam	PF18316	S-layer protein SbsC C-terminal domain	S-l_SbsC_C
UHGV-0159618_30	Structural annotation	PF03864, PF18316, MF_04133, NF041162, COG4653	NA	NA
UHGV-0159618_31	PHROG	phrog_909	major head protein	head and packaging
UHGV-0159618_31	UniRef90	UniRef90_K1TUL5	NA	NA
UHGV-0159618_31	eggNOG-mapper	1536772.R70723_06665	NA	NA
UHGV-0159618_31	Structural annotation	PF02924	NA	NA
UHGV-0159618_32	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-0159618_32	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-0159618_32	Structural annotation	PF06810	NA	NA
UHGV-0159618_33	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0159618_33	UniRef90	UniRef90_A0A7X9XZ65	HK97 gp10 family phage protein	NA
UHGV-0159618_33	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-0159618_33	Structural annotation	PF17395, TIGR01725, COG5005	NA	NA
UHGV-0159618_34	PHROG	phrog_859	portal protein	head and packaging
UHGV-0159618_34	UniRef90	UniRef90_K1T614	Minor head protein	NA
UHGV-0159618_34	Pfam	PF04233	Phage Mu protein F like protein	Phage_Mu_F
UHGV-0159618_34	COG	COG2369	NA	NA
UHGV-0159618_34	Structural annotation	PF04233, TIGR01641, COG2369	NA	NA
UHGV-0159618_36	PHROG	phrog_64	portal protein	head and packaging
UHGV-0159618_36	UniRef90	UniRef90_K1SG85	Phage portal protein, SPP1	NA
UHGV-0159618_36	eggNOG-mapper	673376.F2VHW1_9CAUD	Phage portal protein, SPP1 Gp6-like	NA
UHGV-0159618_36	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0159618_36	Structural annotation	PF05133, MF_04120, TIGR01538, COG3567	NA	NA
UHGV-0159618_37	PHROG	phrog_38	terminase large subunit	head and packaging
UHGV-0159618_37	UniRef90	UniRef90_K1TUM3	Terminase large subunit (Fragment)	NA
UHGV-0159618_37	eggNOG-mapper	1140001.I571_01829	NA	NA
UHGV-0159618_37	Structural annotation	PF17289, PF05876, MF_04147, NF033889, COG5323	NA	NA
UHGV-0159618_39	Structural annotation	PF17941, MF_01917, NF010490, COG3886	NA	NA
UHGV-0159618_40	PHROG	phrog_21498	NA	unknown function
UHGV-0159618_40	UniRef90	UniRef90_UPI0016246E09	chromosome partitioning protein ParB	NA
UHGV-0159618_40	eggNOG-mapper	469378.Ccur_02830	DNA binding	NA
UHGV-0159618_40	COG	COG1475	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	NA
UHGV-0159618_40	Structural annotation	PF05869, TIGR01712	NA	NA
UHGV-0159618_41	PHROG	phrog_25027	NA	unknown function
UHGV-0159618_41	UniRef90	UniRef90_K1SIJ4	ArdcN domain-containing protein	NA
UHGV-0159618_41	eggNOG-mapper	1399942.U3PBI8_9CAUD	NA	NA
UHGV-0159618_41	Pfam	PF08401	N-terminal domain of anti-restriction factor ArdC	ArdcN
UHGV-0159618_43	Structural annotation	PF10723, NF008671, COG4226	NA	NA