UHGV-0159646

Genome information

Genome length 44,508 bps

CDS count 51

Completeness 100.00% (complete)

geNomad score 0.9765

Prediction confidence Confident

Genome information
Genome ID	UHGV-0159646
vOTU ID	vOTU-046278
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_487711
BioSample	SAMN06110355
Country	Netherlands
Virus prediction confidence	Confident

Quality assessment
CheckV method	DTR
CheckV completeness	100.00% (complete)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	8
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9765
Virus hallmark genes (geNomad)	4
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	21.53
Jumbo phage	No

Genome content
Genome length	44,508 bps
GC content	50.10%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	51
CDS density	95.03%
Average CDS length	832.71 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0159646_1	KOfam	K07481	K07481; transposase, IS5 family	NA
UHGV-0159646_1	PHROG	phrog_3598	transposase	integration and excision
UHGV-0159646_1	UniRef90	UniRef90_A0A2V2EK21	IS5 family transposase	NA
UHGV-0159646_1	eggNOG-mapper	1519439.JPJG01000012_gene172	Transposase DDE domain	NA
UHGV-0159646_1	Pfam	PF05598	NA	DUF772
UHGV-0159646_1	Pfam	PF01609	Transposase DDE domain	DDE_Tnp_1
UHGV-0159646_1	NCBIFam	NF033581.1	IS5 family transposase	NA
UHGV-0159646_1	COG	COG3039	Transposase and inactivated derivatives, IS5 family	NA
UHGV-0159646_1	Structural annotation	PF01609, PF05598, NF033581, COG5558	NA	NA
UHGV-0159646_5	KOfam	K03646	tolA; colicin import membrane protein	NA
UHGV-0159646_5	PHROG	phrog_17134	NA	unknown function
UHGV-0159646_5	eggNOG-mapper	1321778.HMPREF1982_03560	NA	NA
UHGV-0159646_5	Pfam	PF10651	BppU N-terminal domain	BppU_N
UHGV-0159646_5	COG	COG2755	Lysophospholipase L1 or related esterase. Includes spore coat protein LipC/YcsK	NA
UHGV-0159646_6	PHROG	phrog_14770	NA	unknown function
UHGV-0159646_6	UniRef90	UniRef90_UPI001BB47D0E	strawberry notch family protein	NA
UHGV-0159646_6	eggNOG-mapper	1123288.SOV_4c02780	protein secretion by the type IV secretion system	NA
UHGV-0159646_6	Pfam	PF13872	P-loop containing NTP hydrolase pore-1	AAA_34
UHGV-0159646_6	Pfam	PF13871	C-terminal domain on Strawberry notch homologue	Helicase_C_4
UHGV-0159646_6	Pfam	PF18857	Large polyvalent protein associated domain 38	LPD38
UHGV-0159646_6	COG	COG0503	Adenine/guanine phosphoribosyltransferase or related PRPP-binding protein	NA
UHGV-0159646_7	eggNOG-mapper	1410650.JHWL01000003_gene2815	NA	NA
UHGV-0159646_7	Structural annotation	PF01471, TIGR02869	NA	NA
UHGV-0159646_9	PHROG	phrog_511	internal virion protein	head and packaging
UHGV-0159646_9	eggNOG-mapper	718252.FP2_29250	NA	NA
UHGV-0159646_9	Structural annotation	PF11134, TIGR03300, NF038126, COG1520	NA	NA
UHGV-0159646_10	PHROG	phrog_12105	NA	unknown function
UHGV-0159646_10	eggNOG-mapper	1226322.HMPREF1545_03850	NA	NA
UHGV-0159646_12	PHROG	phrog_1357	major head protein	head and packaging
UHGV-0159646_12	UniRef90	UniRef90_A0A358AS35	N4-gp56 family major capsid protein	NA
UHGV-0159646_12	eggNOG-mapper	1449126.JQKL01000003_gene1695	NA	NA
UHGV-0159646_12	NCBIFam	TIGR04387.1	N4-gp56 family major capsid protein	NA
UHGV-0159646_12	Structural annotation	PF13252, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-0159646_13	PHROG	phrog_13908	NA	unknown function
UHGV-0159646_13	eggNOG-mapper	1410650.JHWL01000003_gene2831	NA	NA
UHGV-0159646_14	KOfam	K07584	NA	NA
UHGV-0159646_14	PHROG	phrog_4478	peptidase	other
UHGV-0159646_14	UniRef90	UniRef90_A0A416JW56	Ribosomal-processing cysteine protease Prp	NA
UHGV-0159646_14	eggNOG-mapper	411470.RUMGNA_03236	Cysteine protease Prp	NA
UHGV-0159646_14	Pfam	PF04327	Cysteine protease Prp	Peptidase_Prp
UHGV-0159646_14	COG	COG2868	NA	NA
UHGV-0159646_14	Structural annotation	PF04327, NF011125, COG2868	NA	NA
UHGV-0159646_15	PHROG	phrog_156	portal protein	head and packaging
UHGV-0159646_15	UniRef90	UniRef90_A0A8D9UH10	Portal protein	NA
UHGV-0159646_15	eggNOG-mapper	748224.HMPREF9436_01396	NA	NA
UHGV-0159646_15	Structural annotation	PF16510, MF_04120, TIGR01538, COG4383	NA	NA
UHGV-0159646_16	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0159646_16	PHROG	phrog_979	terminase large subunit	head and packaging
UHGV-0159646_16	UniRef90	UniRef90_A0A416JVL2	Terminase-like family protein	NA
UHGV-0159646_16	eggNOG-mapper	748224.HMPREF9436_02548	Terminase-like family	NA
UHGV-0159646_16	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-0159646_16	COG	COG1783	Phage terminase large subunit	NA
UHGV-0159646_16	Structural annotation	PF04466, PF20454, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-0159646_17	KOfam	K07474	xtmA; phage terminase small subunit	NA
UHGV-0159646_17	PHROG	phrog_51	terminase small subunit	head and packaging
UHGV-0159646_17	UniRef90	UniRef90_A0A396NMY4	Terminase small subunit	NA
UHGV-0159646_17	eggNOG-mapper	476272.RUMHYD_01754	Terminase small subunit	NA
UHGV-0159646_17	Pfam	PF03592	Terminase small subunit	Terminase_2
UHGV-0159646_17	COG	COG3728	Phage terminase, small subunit	NA
UHGV-0159646_17	Structural annotation	PF03592, COG3728	NA	NA
UHGV-0159646_19	PHROG	phrog_16123	NA	unknown function
UHGV-0159646_19	eggNOG-mapper	1273103.NM10_00919	NA	NA
UHGV-0159646_20	Structural annotation	PF01402, NF040976, COG4710	NA	NA
UHGV-0159646_21	UniRef90	UniRef90_A0A1Y3RJS2	Sigma70_r4_2 domain-containing protein	NA
UHGV-0159646_24	KOfam	K14059	int; integrase	NA
UHGV-0159646_24	PHROG	phrog_1	integrase	integration and excision
UHGV-0159646_24	UniRef90	UniRef90_UPI001C0F402D	site-specific integrase	NA
UHGV-0159646_24	eggNOG-mapper	641112.ACOK01000073_gene2860	Phage integrase family	NA
UHGV-0159646_24	Pfam	PF14659	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
UHGV-0159646_24	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0159646_24	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0159646_24	Structural annotation	PF00589, PF14659, MF_02055, TIGR02224, COG4974	NA	NA
UHGV-0159646_25	Pfam	PF13560	Helix-turn-helix domain	HTH_31
UHGV-0159646_25	Structural annotation	PF13560, MF_00535, TIGR03070, COG1396	NA	NA
UHGV-0159646_26	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0159646_26	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0159646_26	UniRef90	UniRef90_UPI001C3B6466	Helix-turn-helix domain-containing protein	NA
UHGV-0159646_26	eggNOG-mapper	1121335.Clst_0369	helix-turn-helix	NA
UHGV-0159646_26	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0159646_26	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0159646_27	UniRef90	UniRef90_UPI001A9C255F	NA	NA
UHGV-0159646_27	eggNOG-mapper	1121335.Clst_0370	NA	NA
UHGV-0159646_27	Pfam	PF02954	Bacterial regulatory protein, Fis family	HTH_8
UHGV-0159646_27	Structural annotation	PF05339, NF041951, COG3655	NA	NA
UHGV-0159646_30	Structural annotation	PF12728, TIGR01764, COG3311	NA	NA
UHGV-0159646_34	PHROG	phrog_434	RecE-like recombination exonuclease	DNA, RNA and nucleotide metabolism
UHGV-0159646_34	UniRef90	UniRef90_A0A1Y4W4B5	YqaJ domain-containing protein	NA
UHGV-0159646_34	eggNOG-mapper	1121344.JHZO01000003_gene985	YqaJ viral recombinase family	NA
UHGV-0159646_34	Pfam	PF09588	YqaJ-like viral recombinase domain	YqaJ
UHGV-0159646_34	NCBIFam	TIGR03033.1	putative phage-type endonuclease	NA
UHGV-0159646_34	COG	COG5377	Phage-related protein, predicted endonuclease	NA
UHGV-0159646_34	Structural annotation	PF09588, MF_03030, TIGR03033, COG5377	NA	NA
UHGV-0159646_35	KOfam	K07455	recT; recombination protein RecT	NA
UHGV-0159646_35	PHROG	phrog_148	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0159646_35	UniRef90	UniRef90_UPI0018C50A8E	recombinase RecT	NA
UHGV-0159646_35	eggNOG-mapper	272626.lin2413	Recombinational DNA repair protein (RecE pathway)	NA
UHGV-0159646_35	Pfam	PF03837	RecT family	RecT
UHGV-0159646_35	NCBIFam	TIGR00616.1	recombinase, phage RecT family	NA
UHGV-0159646_35	COG	COG3723	Recombinational DNA repair protein RecT	NA
UHGV-0159646_35	Structural annotation	PF03837, TIGR00616, COG3723	NA	NA
UHGV-0159646_36	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0159646_36	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0159646_36	UniRef90	UniRef90_A0A2V2FMD6	Single-stranded DNA-binding protein	NA
UHGV-0159646_36	eggNOG-mapper	931626.Awo_c35500	Single-stranded DNA-binding protein	NA
UHGV-0159646_36	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0159646_36	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0159646_36	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0159646_36	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0159646_36	Structural annotation	PF00436, MF_00984, NF005242, COG0629	NA	NA
UHGV-0159646_37	PHROG	phrog_2149	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0159646_37	UniRef90	UniRef90_UPI00164BB1D1	transcriptional regulator	NA
UHGV-0159646_37	eggNOG-mapper	1139219.I569_00860	DnaD domain protein	NA
UHGV-0159646_37	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0159646_37	Structural annotation	PF01475, TIGR01610, COG0735	NA	NA
UHGV-0159646_39	PHROG	phrog_824	NA	unknown function
UHGV-0159646_39	UniRef90	UniRef90_A0A6N8GXS9	VRR-NUC domain-containing protein	NA
UHGV-0159646_39	eggNOG-mapper	397288.C806_00096	VRR_NUC	NA
UHGV-0159646_39	Pfam	PF08774	VRR-NUC domain	VRR_NUC
UHGV-0159646_42	PHROG	phrog_60	NA	unknown function
UHGV-0159646_42	UniRef90	UniRef90_A0A417H740	NA	NA
UHGV-0159646_42	Pfam	PF04448	NA	DUF551
UHGV-0159646_42	Structural annotation	NF041588	NA	NA
UHGV-0159646_44	Structural annotation	NF040595	NA	NA
UHGV-0159646_45	PHROG	phrog_6721	NA	unknown function
UHGV-0159646_45	eggNOG-mapper	428125.CLOLEP_01387	NA	NA
UHGV-0159646_45	Structural annotation	PF02511, MF_01408, TIGR02170, COG1351	NA	NA
UHGV-0159646_46	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0159646_46	UniRef90	UniRef90_A0A7C6P5S1	RNA polymerase subunit sigma-24	NA
UHGV-0159646_46	eggNOG-mapper	1121335.Clst_0383	NA	NA
UHGV-0159646_46	Structural annotation	PF02996	NA	NA
UHGV-0159646_48	eggNOG-mapper	394503.Ccel_1297	NA	NA
UHGV-0159646_49	UniRef90	UniRef90_UPI001E4D989F	CTP synthase	NA
UHGV-0159646_49	eggNOG-mapper	552396.HMPREF0863_01650	NA	NA
UHGV-0159646_50	KOfam	K19303	mepH; murein DD-endopeptidase [EC:3.4.-.-]	NA
UHGV-0159646_50	PHROG	phrog_329	minor tail protein	tail
UHGV-0159646_50	UniRef90	UniRef90_A0A2V2EEK9	NlpC/P60 domain-containing protein	NA
UHGV-0159646_50	eggNOG-mapper	357809.Cphy_0799	COG COG0791 Cell wall-associated hydrolases (invasion-associated proteins)	NA
UHGV-0159646_50	Pfam	PF00877	NlpC/P60 family	NLPC_P60
UHGV-0159646_50	Pfam	PF01471	Putative peptidoglycan binding domain	PG_binding_1
UHGV-0159646_50	COG	COG0791	Cell wall-associated hydrolase, NlpC_P60 family	NA
UHGV-0159646_50	Structural annotation	PF00877, PF01471, NF033743, COG0791	NA	NA