UHGV-0159662

Genome information

Genome length 34,368 bps

CDS count 50

Completeness 59.80% (medium-quality)

geNomad score 0.9605

Prediction confidence Confident

Genome information
Genome ID	UHGV-0159662
vOTU ID	vOTU-022192
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_490212
BioSample	SAMN06110347
Country	Netherlands
Virus prediction confidence	Confident

Quality assessment
CheckV method	HMM-based
CheckV completeness	59.80% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	Yes
CheckV viral markers	18
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9605
Virus hallmark genes (geNomad)	10
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	58.74
Jumbo phage	No

Genome content
Genome length	34,368 bps
GC content	38.56%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	50
CDS density	91.19%
Average CDS length	630.12 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0159662_1	PHROG	phrog_1914	NA	unknown function
UHGV-0159662_1	UniRef90	UniRef90_UPI000D0F8E13	ImmA/IrrE family metallo-endopeptidase	NA
UHGV-0159662_1	eggNOG-mapper	1160721.RBI_I01604	NA	NA
UHGV-0159662_1	Pfam	PF06114	IrrE N-terminal-like domain	Peptidase_M78
UHGV-0159662_1	COG	COG2856	Zn-dependent peptidase ImmA, M78 family	NA
UHGV-0159662_1	Structural annotation	PF06114, COG2856	NA	NA
UHGV-0159662_2	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0159662_2	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0159662_2	UniRef90	UniRef90_A0A136WE02	Helix-turn-helix domain protein	NA
UHGV-0159662_2	eggNOG-mapper	1121423.JONT01000002_gene2372	Peptidase S24-like	NA
UHGV-0159662_2	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0159662_2	COG	COG1974	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	NA
UHGV-0159662_2	Structural annotation	PF13560, MF_00535, NF007257, COG3655	NA	NA
UHGV-0159662_3	UniRef90	UniRef90_A0A265Q7N4	Phage repressor protein	NA
UHGV-0159662_3	eggNOG-mapper	558169.AGAV01000008_gene736	NA	NA
UHGV-0159662_3	Structural annotation	PF05339, NF041951, COG1396	NA	NA
UHGV-0159662_4	KOfam	K07741	antB; anti-repressor protein	NA
UHGV-0159662_4	PHROG	phrog_130	anti-repressor Ant	transcription regulation
UHGV-0159662_4	UniRef90	UniRef90_UPI001B3C6365	phage antirepressor KilAC domain-containing protein	NA
UHGV-0159662_4	eggNOG-mapper	997296.PB1_04150	BRO family, N-terminal domain	NA
UHGV-0159662_4	Pfam	PF02498	BRO family, N-terminal domain	Bro-N
UHGV-0159662_4	Pfam	PF03374	Phage antirepressor protein KilAC domain	ANT
UHGV-0159662_4	COG	COG3617	Prophage antirepressor	NA
UHGV-0159662_4	Structural annotation	PF03374, PF02498, TIGR02681, COG3617, COG3645	NA	NA
UHGV-0159662_10	PHROG	phrog_253	Mu Gam-like end protection	DNA, RNA and nucleotide metabolism
UHGV-0159662_10	UniRef90	UniRef90_R6J0Q7	NA	NA
UHGV-0159662_10	eggNOG-mapper	1008459.TASI_0420	Siphovirus Gp157	NA
UHGV-0159662_10	Pfam	PF05565	Siphovirus Gp157	Sipho_Gp157
UHGV-0159662_10	Structural annotation	PF05565, NF002139	NA	NA
UHGV-0159662_11	PHROG	phrog_2872	Sak4-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0159662_11	UniRef90	UniRef90_A0A847VZU9	AAA family ATPase	NA
UHGV-0159662_11	eggNOG-mapper	1345695.CLSA_c30180	AAA domain	NA
UHGV-0159662_11	Pfam	PF13479	AAA domain	AAA_24
UHGV-0159662_11	Structural annotation	PF13479, MF_00350, TIGR01618, COG0468	NA	NA
UHGV-0159662_12	PHROG	phrog_18107	NA	unknown function
UHGV-0159662_12	UniRef90	UniRef90_UPI0004855F5F	NA	NA
UHGV-0159662_12	eggNOG-mapper	476272.RUMHYD_02831	NA	NA
UHGV-0159662_12	Structural annotation	PF05037	NA	NA
UHGV-0159662_13	KOfam	K19789	radD; DNA repair protein RadD	NA
UHGV-0159662_13	PHROG	phrog_16	DNA helicase	DNA, RNA and nucleotide metabolism
UHGV-0159662_13	UniRef90	UniRef90_A0A356CZA9	Helicase	NA
UHGV-0159662_13	eggNOG-mapper	1410670.JHXF01000015_gene2270	helicase	NA
UHGV-0159662_13	PADLOC	mREase_IV_00005	Type IV methyl-directed restriction enzyme	RM
UHGV-0159662_13	Pfam	PF04851	Type III restriction enzyme, res subunit	ResIII
UHGV-0159662_13	Pfam	PF00271	Helicase conserved C-terminal domain	Helicase_C
UHGV-0159662_13	COG	COG1061	Superfamily II DNA or RNA helicase	NA
UHGV-0159662_13	Structural annotation	PF04851, PF00271, MF_01489, TIGR04095, COG1061	NA	NA
UHGV-0159662_14	PHROG	phrog_2514	DnaD-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0159662_14	eggNOG-mapper	1121912.AUHD01000018_gene3472	DnaD domain protein	NA
UHGV-0159662_14	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0159662_14	Structural annotation	PF10771, MF_01177, NF041413, COG0640	NA	NA
UHGV-0159662_15	KOfam	K02314	dnaB; replicative DNA helicase [EC:5.6.2.3]	NA
UHGV-0159662_15	PHROG	phrog_19	DnaB-like replicative helicase	DNA, RNA and nucleotide metabolism
UHGV-0159662_15	UniRef90	UniRef90_A0A1C6JHY9	DNA helicase	NA
UHGV-0159662_15	eggNOG-mapper	1280689.AUJC01000011_gene1502	Participates in initiation and elongation during chromosome replication	NA
UHGV-0159662_15	Pfam	PF03796	DnaB-like helicase C terminal domain	DnaB_C
UHGV-0159662_15	COG	COG0305	Replicative DNA helicase	NA
UHGV-0159662_15	Structural annotation	PF03796, PF00772, MF_04155, TIGR00665, COG0305	NA	NA
UHGV-0159662_20	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0159662_20	UniRef90	UniRef90_UPI00131A5489	RNA polymerase subunit sigma-24	NA
UHGV-0159662_20	Pfam	PF07374	NA	DUF1492
UHGV-0159662_20	COG	COG1191	DNA-directed RNA polymerase specialized sigma subunit	NA
UHGV-0159662_20	Structural annotation	PF07374, TIGR01636	NA	NA
UHGV-0159662_21	KOfam	K07451	mcrA; 5-methylcytosine-specific restriction enzyme A [EC:3.1.21.-]	NA
UHGV-0159662_21	PHROG	phrog_144	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0159662_21	UniRef90	UniRef90_UPI000D0F9C33	HNH endonuclease	NA
UHGV-0159662_21	eggNOG-mapper	397288.C806_00078	HNH nucleases	NA
UHGV-0159662_21	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0159662_22	UniRef90	UniRef90_A0A1V4SQ52	INTEIN_C_TER domain-containing protein	NA
UHGV-0159662_22	eggNOG-mapper	665956.HMPREF1032_03899	NA	NA
UHGV-0159662_24	PHROG	phrog_83	terminase small subunit	head and packaging
UHGV-0159662_24	UniRef90	UniRef90_UPI000D0F22F6	P27 family phage terminase small subunit	NA
UHGV-0159662_24	eggNOG-mapper	1567010.A0A0A7RUA4_9VIRU	Phage terminase, small subunit	NA
UHGV-0159662_24	Pfam	PF05119	Phage terminase, small subunit	Terminase_4
UHGV-0159662_24	Structural annotation	PF05119, TIGR01558, COG3747	NA	NA
UHGV-0159662_25	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0159662_25	UniRef90	UniRef90_UPI000D0E96FE	terminase large subunit	NA
UHGV-0159662_25	eggNOG-mapper	1304866.K413DRAFT_1222	Terminase	NA
UHGV-0159662_25	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0159662_25	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0159662_25	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0159662_25	Structural annotation	PF20441, PF03354, MF_04146, TIGR01547, COG4626	NA	NA
UHGV-0159662_26	PHROG	phrog_12	portal protein	head and packaging
UHGV-0159662_26	UniRef90	UniRef90_UPI000D10D8A8	phage portal protein	NA
UHGV-0159662_26	eggNOG-mapper	1414720.CBYM010000001_gene697	Phage portal protein, HK97 family	NA
UHGV-0159662_26	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0159662_26	NCBIFam	TIGR01537.1	phage portal protein	NA
UHGV-0159662_26	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0159662_26	Structural annotation	PF04860, MF_04120, TIGR01537, COG4695	NA	NA
UHGV-0159662_28	PHROG	phrog_6332	NA	unknown function
UHGV-0159662_28	UniRef90	UniRef90_A0A3R6I8C7	Cys_rich_CPCC domain-containing protein	NA
UHGV-0159662_28	eggNOG-mapper	1123288.SOV_2c10570	Cysteine-rich CPCC	NA
UHGV-0159662_28	Pfam	PF14206	Cysteine-rich CPCC	Cys_rich_CPCC
UHGV-0159662_28	Structural annotation	PF14206	NA	NA
UHGV-0159662_29	KOfam	K06904	NA	NA
UHGV-0159662_29	PHROG	phrog_80	head maturation protease	head and packaging
UHGV-0159662_29	UniRef90	UniRef90_R6RAP9	HK97 family phage prohead protease	NA
UHGV-0159662_29	eggNOG-mapper	1285586.H131_21307	Caudovirus prohead serine protease	NA
UHGV-0159662_29	Pfam	PF04586	Caudovirus prohead serine protease	Peptidase_S78
UHGV-0159662_29	COG	COG3740	Phage head maturation protease	NA
UHGV-0159662_29	Structural annotation	PF04586, TIGR01543, COG3740	NA	NA
UHGV-0159662_30	PHROG	phrog_10	major head protein	head and packaging
UHGV-0159662_30	UniRef90	UniRef90_UPI000D10978F	phage major capsid protein	NA
UHGV-0159662_30	eggNOG-mapper	397288.C806_00073	phage major capsid protein, HK97 family	NA
UHGV-0159662_30	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0159662_30	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0159662_30	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0159662_30	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0159662_31	UniRef90	UniRef90_UPI000D0F2632	head-tail connector protein	NA
UHGV-0159662_31	eggNOG-mapper	1196031.ALEG01000039_gene1818	Phage gp6-like head-tail connector protein	NA
UHGV-0159662_31	Pfam	PF05135	Phage gp6-like head-tail connector protein	Phage_connect_1
UHGV-0159662_31	NCBIFam	TIGR01560.2	head-tail connector protein	NA
UHGV-0159662_31	Structural annotation	PF05135, TIGR01560	NA	NA
UHGV-0159662_32	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0159662_33	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-0159662_34	Structural annotation	PF05657	NA	NA
UHGV-0159662_35	PHROG	phrog_88	major tail protein	tail
UHGV-0159662_35	eggNOG-mapper	1280706.AUJE01000003_gene2174	Phage major tail protein, phi13 family	NA
UHGV-0159662_35	NCBIFam	TIGR01603.1	major tail protein	NA
UHGV-0159662_35	COG	COG5492	NA	NA
UHGV-0159662_36	Structural annotation	PF11836	NA	NA
UHGV-0159662_37	eggNOG-mapper	748727.CLJU_c16790	NA	NA
UHGV-0159662_38	UniRef90	UniRef90_A0A7X5J2L7	CopG family transcriptional regulator	NA
UHGV-0159662_38	eggNOG-mapper	469604.HMPREF0946_00961	NA	NA
UHGV-0159662_38	Structural annotation	PF12651, NF041793, COG4710	NA	NA
UHGV-0159662_39	PHROG	phrog_130	anti-repressor Ant	transcription regulation
UHGV-0159662_39	UniRef90	UniRef90_UPI000D649887	Bro-N domain-containing protein	NA
UHGV-0159662_39	eggNOG-mapper	1235802.C823_04551	Phage antirepressor protein KilAC domain	NA
UHGV-0159662_39	Pfam	PF02498	BRO family, N-terminal domain	Bro-N
UHGV-0159662_39	COG	COG3645	Phage antirepressor protein YoqD, KilAC domain	NA
UHGV-0159662_40	KOfam	K20283	GOLGA4; golgin subfamily A member 4	NA
UHGV-0159662_40	PHROG	phrog_5218	NA	unknown function
UHGV-0159662_40	UniRef90	UniRef90_UPI000D0E7A19	phage tail tape measure protein	NA
UHGV-0159662_40	eggNOG-mapper	768486.EHR_09620	Phage-related minor tail protein	NA
UHGV-0159662_40	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-0159662_40	COG	COG5280	Phage-related minor tail protein	NA
UHGV-0159662_40	Structural annotation	PF10145, TIGR01760, COG5280	NA	NA
UHGV-0159662_41	eggNOG-mapper	573061.Clocel_2428	Phage tail protein	NA
UHGV-0159662_41	COG	COG4722	Phage-related protein YomH	NA
UHGV-0159662_42	PHROG	phrog_538	minor tail protein	tail
UHGV-0159662_42	UniRef90	UniRef90_UPI000A1CE045	siphovirus ReqiPepy6 Gp37-like family protein	NA
UHGV-0159662_42	eggNOG-mapper	33035.JPJF01000033_gene2262	NA	NA
UHGV-0159662_42	Pfam	PF14594	Siphovirus ReqiPepy6 Gp37-like protein	Sipho_Gp37
UHGV-0159662_42	Structural annotation	PF14594, TIGR01665, COG4926	NA	NA
UHGV-0159662_43	Structural annotation	PF16407, NF032891, COG5456	NA	NA
UHGV-0159662_46	PHROG	phrog_1863	NA	unknown function
UHGV-0159662_46	UniRef90	UniRef90_UPI001F223E8B	hemolysin XhlA family protein	NA
UHGV-0159662_46	eggNOG-mapper	428125.CLOLEP_01781	NA	NA
UHGV-0159662_47	PHROG	phrog_443	holin	lysis
UHGV-0159662_47	UniRef90	UniRef90_UPI000D109718	holin	NA
UHGV-0159662_47	eggNOG-mapper	1235800.C819_01425	Putative lactococcus lactis phage r1t holin	NA
UHGV-0159662_47	Pfam	PF16945	Putative lactococcus lactis phage r1t holin	Phage_r1t_holin
UHGV-0159662_47	Structural annotation	PF16945	NA	NA
UHGV-0159662_48	Structural annotation	PF02796, COG2771	NA	NA
UHGV-0159662_49	KOfam	K07273	acm; lysozyme	NA
UHGV-0159662_49	PHROG	phrog_291	endolysin	lysis
UHGV-0159662_49	UniRef90	UniRef90_A0A1C6JBU8	Lysozyme M1	NA
UHGV-0159662_49	eggNOG-mapper	1304880.JAGB01000002_gene2202	Glycosyl hydrolase, family 25	NA
UHGV-0159662_49	Pfam	PF01183	Glycosyl hydrolases family 25	Glyco_hydro_25
UHGV-0159662_49	Pfam	PF01476	LysM domain	LysM
UHGV-0159662_49	COG	COG1388	LysM repeat	NA
UHGV-0159662_49	Structural annotation	PF01183, NF007404, COG3757	NA	NA
UHGV-0159662_50	PHROG	phrog_419	NA	unknown function
UHGV-0159662_50	UniRef90	UniRef90_UPI001CBFD05B	PGDYG domain-containing protein	NA
UHGV-0159662_50	eggNOG-mapper	203119.Cthe_2457	NA	NA
UHGV-0159662_50	Structural annotation	PF14083	NA	NA