UHGV-0159717

Genome information

vOTU vOTU-019607

Genome length 51,585 bps

CDS count 91

Completeness 62.15% (medium-quality)

geNomad score 0.9760

Prediction confidence Confident

Genome information
Genome ID	UHGV-0159717
vOTU ID	vOTU-019607
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_484689
BioSample	SAMN06110023
Country	Netherlands
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	62.15% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	13
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9760
Virus hallmark genes (geNomad)	6
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	35.85
Jumbo phage	No

Genome content
Genome length	51,585 bps
GC content	38.10%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	91
CDS density	83.63%
Average CDS length	476.04 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0159717_1	Structural annotation	PF04480, NF007294, COG3727	NA	NA
UHGV-0159717_2	Structural annotation	PF00075, MF_00042, NF041306, COG0328	NA	NA
UHGV-0159717_3	Structural annotation	PF20024, NF041413, COG0640	NA	NA
UHGV-0159717_4	Structural annotation	PF12198	NA	NA
UHGV-0159717_7	UniRef90	UniRef90_A0A7H1MQD5	NA	NA
UHGV-0159717_7	eggNOG-mapper	445970.ALIPUT_02650	NA	NA
UHGV-0159717_7	Structural annotation	PF12987	NA	NA
UHGV-0159717_8	PHROG	phrog_36980	NA	unknown function
UHGV-0159717_8	eggNOG-mapper	470145.BACCOP_01160	NA	NA
UHGV-0159717_9	PHROG	phrog_19572	NA	unknown function
UHGV-0159717_9	UniRef90	UniRef90_A0A3R6I0A2	NA	NA
UHGV-0159717_9	eggNOG-mapper	537011.PREVCOP_04244	NA	NA
UHGV-0159717_9	Pfam	PF14902	NA	DUF4494
UHGV-0159717_9	Structural annotation	PF14902	NA	NA
UHGV-0159717_10	Structural annotation	PF00692, MF_00116, TIGR00576, COG0756	NA	NA
UHGV-0159717_13	UniRef90	UniRef90_A0A7H1MQE1	Helix-turn-helix domain-containing protein	NA
UHGV-0159717_13	Pfam	PF13384	Homeodomain-like domain	HTH_23
UHGV-0159717_13	Structural annotation	PF02796, NF040595	NA	NA
UHGV-0159717_16	KOfam	K00571	E2.1.1.72; site-specific DNA-methyltransferase (adenine-specific) [EC:2.1.1.72]	NA
UHGV-0159717_16	PHROG	phrog_67	DNA methyltransferase	other
UHGV-0159717_16	UniRef90	UniRef90_UPI001898193D	site-specific DNA-methyltransferase	NA
UHGV-0159717_16	eggNOG-mapper	1268240.ATFI01000007_gene432	Belongs to the N(4) N(6)-methyltransferase family	NA
UHGV-0159717_16	PADLOC	MTase_II_00157	Type II methyltransferase	RM
UHGV-0159717_16	Pfam	PF01555	DNA methylase	N6_N4_Mtase
UHGV-0159717_16	COG	COG0863	DNA modification methylase	NA
UHGV-0159717_16	Structural annotation	PF01555, MF_01872, NF010253, COG0863	NA	NA
UHGV-0159717_17	PHROG	phrog_824	NA	unknown function
UHGV-0159717_17	UniRef90	UniRef90_A0A7H1MQE6	VRR-NUC domain-containing protein	NA
UHGV-0159717_17	eggNOG-mapper	1229276.DI53_1617	VRR_NUC	NA
UHGV-0159717_17	Pfam	PF08774	VRR-NUC domain	VRR_NUC
UHGV-0159717_23	Structural annotation	PF18852	NA	NA
UHGV-0159717_30	PHROG	phrog_130	anti-repressor Ant	transcription regulation
UHGV-0159717_30	UniRef90	UniRef90_A0A7H1MQG0	Bro-N domain-containing protein	NA
UHGV-0159717_30	eggNOG-mapper	1347393.HG726026_gene2597	BRO family, N-terminal domain	NA
UHGV-0159717_30	Pfam	PF02498	BRO family, N-terminal domain	Bro-N
UHGV-0159717_30	Pfam	PF03374	Phage antirepressor protein KilAC domain	ANT
UHGV-0159717_30	COG	COG3617	Prophage antirepressor	NA
UHGV-0159717_30	Structural annotation	PF03374, PF02498, TIGR02681, COG3617, COG3645	NA	NA
UHGV-0159717_34	Structural annotation	PF13371, TIGR02795, COG4259	NA	NA
UHGV-0159717_35	Structural annotation	PF03100, MF_01959, NF009635, COG2332	NA	NA
UHGV-0159717_36	eggNOG-mapper	272562.CA_C1147	NA	NA
UHGV-0159717_41	KOfam	K05521	draG; ADP-ribosyl-[dinitrogen reductase] hydrolase [EC:3.2.2.24]	NA
UHGV-0159717_41	PHROG	phrog_6572	ADP-ribosylglycohydrolase	other
UHGV-0159717_41	UniRef90	UniRef90_A0A7H1MQG9	ADP-ribosylglycohydrolase	NA
UHGV-0159717_41	eggNOG-mapper	445970.ALIPUT_02656	ADP-ribosylglycohydrolase	NA
UHGV-0159717_41	Pfam	PF03747	ADP-ribosylglycohydrolase	ADP_ribosyl_GH
UHGV-0159717_41	COG	COG1397	ADP-ribosylglycohydrolase	NA
UHGV-0159717_41	Structural annotation	PF03747, TIGR02662, COG1397	NA	NA
UHGV-0159717_43	KOfam	K11044	spyA; C3 family ADP-ribosyltransferase [EC:2.4.2.-]	NA
UHGV-0159717_43	PHROG	phrog_16625	NA	unknown function
UHGV-0159717_43	UniRef90	UniRef90_A0A7H1MQH1	ADPrib_exo_Tox domain-containing protein	NA
UHGV-0159717_43	eggNOG-mapper	445970.ALIPUT_02658	NA	NA
UHGV-0159717_43	Pfam	PF03496	ADP-ribosyltransferase exoenzyme	ADPrib_exo_Tox
UHGV-0159717_43	Structural annotation	PF03496, PF06152, MF_04139, NF040688	NA	NA
UHGV-0159717_44	Pfam	PF02195	ParB/Sulfiredoxin domain	ParBc
UHGV-0159717_44	Structural annotation	PF02195, TIGR00180, COG5119	NA	NA
UHGV-0159717_45	PHROG	phrog_64	portal protein	head and packaging
UHGV-0159717_45	UniRef90	UniRef90_A0A7H1MQH2	Phage portal protein	NA
UHGV-0159717_45	eggNOG-mapper	1121100.JCM6294_1089	Phage portal protein, SPP1 Gp6-like	NA
UHGV-0159717_45	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0159717_45	Structural annotation	PF05133, MF_04120, TIGR01538, COG5511	NA	NA
UHGV-0159717_49	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0159717_49	PHROG	phrog_5653	terminase large subunit	head and packaging
UHGV-0159717_49	UniRef90	UniRef90_A0A7H1MQH3	PBSX family phage terminase large subunit	NA
UHGV-0159717_49	eggNOG-mapper	1227266.HMPREF1551_00524	Phage terminase, large subunit, PBSX family	NA
UHGV-0159717_49	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-0159717_49	Pfam	PF17288	Terminase RNAseH like domain	Terminase_3C
UHGV-0159717_49	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0159717_49	COG	COG1783	Phage terminase large subunit	NA
UHGV-0159717_49	Structural annotation	PF04466, PF20441, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0159717_52	KOfam	K01495	GCH1, folE; GTP cyclohydrolase IA [EC:3.5.4.16]	NA
UHGV-0159717_52	PHROG	phrog_2197	GTP cyclohydrolase	other
UHGV-0159717_52	UniRef90	UniRef90_A0A415VF94	GTP cyclohydrolase 1	NA
UHGV-0159717_52	eggNOG-mapper	484018.BACPLE_00674	GTP cyclohydrolase I	NA
UHGV-0159717_52	Pfam	PF01227	GTP cyclohydrolase I	GTP_cyclohydroI
UHGV-0159717_52	NCBIFam	NF006826.0	GTP cyclohydrolase I FolE	NA
UHGV-0159717_52	COG	COG0302	GTP cyclohydrolase I	NA
UHGV-0159717_52	Structural annotation	PF01227, MF_00223, NF006826, COG0302	NA	NA
UHGV-0159717_53	KOfam	K10026	queE; 7-carboxy-7-deazaguanine synthase [EC:4.3.99.3]	NA
UHGV-0159717_53	PHROG	phrog_2076	QueE-like radical SAM domain	moron, auxiliary metabolic gene and host takeover
UHGV-0159717_53	UniRef90	UniRef90_A0A7H1MQH8	7-carboxy-7-deazaguanine synthase	NA
UHGV-0159717_53	eggNOG-mapper	1284775.HMPREF1640_00105	Catalyzes the complex heterocyclic radical-mediated conversion of 6-carboxy-5,6,7,8-tetrahydropterin (CPH4) to 7- carboxy-7-deazaguanine (CDG), a step common to the biosynthetic pathways of all 7-deazapurine-containing compounds	NA
UHGV-0159717_53	COG	COG0602	Organic radical activating enzyme NrdG/QueE	NA
UHGV-0159717_54	PHROG	phrog_887	queuine tRNA-ribosyltransferase	moron, auxiliary metabolic gene and host takeover
UHGV-0159717_54	UniRef90	UniRef90_R6N9F6	Mycobacteriophage GP2 protein	NA
UHGV-0159717_54	eggNOG-mapper	445970.ALIPUT_02667	NA	NA
UHGV-0159717_54	Structural annotation	PF00290, MF_01634, TIGR00432, COG0269	NA	NA
UHGV-0159717_55	PHROG	phrog_17622	NA	unknown function
UHGV-0159717_55	UniRef90	UniRef90_A0A1H4E8V3	ParB-like nuclease domain-containing protein	NA
UHGV-0159717_55	eggNOG-mapper	411476.BACOVA_03898	ParB-like nuclease domain	NA
UHGV-0159717_55	COG	COG1475	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	NA
UHGV-0159717_55	Structural annotation	PF02195, MF_02015, TIGR03764	NA	NA
UHGV-0159717_58	PHROG	phrog_940	nuclease	DNA, RNA and nucleotide metabolism
UHGV-0159717_58	UniRef90	UniRef90_A0A7H1MQI5	NA	NA
UHGV-0159717_58	eggNOG-mapper	762982.HMPREF9442_01170	NA	NA
UHGV-0159717_58	Pfam	PF14386	NA	DUF4417
UHGV-0159717_58	COG	COG1475	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	NA
UHGV-0159717_58	Structural annotation	PF14386	NA	NA
UHGV-0159717_59	Pfam	PF08279	HTH domain	HTH_11
UHGV-0159717_59	Structural annotation	PF04492, TIGR01714	NA	NA
UHGV-0159717_62	Structural annotation	PF18195, COG5475	NA	NA
UHGV-0159717_66	PHROG	phrog_9662	NA	unknown function
UHGV-0159717_71	UniRef90	UniRef90_A0A3E5E936	NA	NA
UHGV-0159717_71	Pfam	PF04448	NA	DUF551
UHGV-0159717_71	Structural annotation	PF07875, TIGR02501	NA	NA
UHGV-0159717_75	PHROG	phrog_8684	NA	unknown function
UHGV-0159717_75	UniRef90	UniRef90_A0A3R6HFW8	YopX domain-containing protein	NA
UHGV-0159717_75	eggNOG-mapper	445970.ALIPUT_01614	YopX protein	NA
UHGV-0159717_75	Pfam	PF09643	YopX protein	YopX
UHGV-0159717_75	Structural annotation	PF09643, TIGR01671	NA	NA
UHGV-0159717_76	PHROG	phrog_625	NA	unknown function
UHGV-0159717_76	UniRef90	UniRef90_A0A6I1RWR8	ASCH domain-containing protein	NA
UHGV-0159717_76	eggNOG-mapper	1327970.R9ZXS4_9CAUD	NA	NA
UHGV-0159717_77	KOfam	K01356	lexA; repressor LexA [EC:3.4.21.88]	NA
UHGV-0159717_77	PHROG	phrog_4	transcriptional repressor	transcription regulation
UHGV-0159717_77	UniRef90	UniRef90_A0A7H1MQ96	Helix-turn-helix transcriptional regulator	NA
UHGV-0159717_77	eggNOG-mapper	1122985.HMPREF1991_02233	Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair	NA
UHGV-0159717_77	Pfam	PF00717	Peptidase S24-like	Peptidase_S24
UHGV-0159717_77	COG	COG1974	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	NA
UHGV-0159717_77	Structural annotation	PF00717, PF12844, MF_00015, TIGR00498, COG2932	NA	NA
UHGV-0159717_79	UniRef90	UniRef90_A0A7H1MQ97	Helix-turn-helix domain-containing protein	NA
UHGV-0159717_79	Pfam	PF12728	Helix-turn-helix domain	HTH_17
UHGV-0159717_79	Structural annotation	PF12728, NF033787, COG3311	NA	NA
UHGV-0159717_81	KOfam	K03546	sbcC, rad50; DNA repair protein SbcC/Rad50	NA
UHGV-0159717_81	PHROG	phrog_77	SbcC-like subunit of palindrome specific endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0159717_81	UniRef90	UniRef90_A0A415VGU6	AAA_23 domain-containing protein	NA
UHGV-0159717_81	eggNOG-mapper	457424.BFAG_02387	P-loop containing region of AAA domain	NA
UHGV-0159717_81	Pfam	PF13476	AAA domain	AAA_23
UHGV-0159717_81	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-0159717_81	Structural annotation	PF02463, MF_00449, NF041034, COG0419	NA	NA
UHGV-0159717_82	PHROG	phrog_561	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0159717_82	UniRef90	UniRef90_A0A7H1MQA1	Recombinase RecT	NA
UHGV-0159717_82	eggNOG-mapper	563192.HMPREF0179_00147	NA	NA
UHGV-0159717_82	Structural annotation	PF03837, TIGR01913, COG3723	NA	NA
UHGV-0159717_83	KOfam	K06167	phnP; phosphoribosyl 1,2-cyclic phosphate phosphodiesterase [EC:3.1.4.55]	NA
UHGV-0159717_83	PHROG	phrog_392	metal-dependent hydrolase	other
UHGV-0159717_83	UniRef90	UniRef90_A0A7H1MQA2	MBL fold metallo-hydrolase	NA
UHGV-0159717_83	eggNOG-mapper	357276.EL88_12605	Metallo-beta-lactamase superfamily	NA
UHGV-0159717_83	Pfam	PF00753	Metallo-beta-lactamase superfamily	Lactamase_B
UHGV-0159717_83	dbAPIS	APIS058	NA	NA
UHGV-0159717_83	COG	COG1235	Phosphoribosyl 1,2-cyclic phosphate phosphodiesterase	NA
UHGV-0159717_83	Structural annotation	PF02112, MF_01818, NF041851, COG1234	NA	NA
UHGV-0159717_85	PHROG	phrog_9236	pyrophosphatase	other
UHGV-0159717_85	eggNOG-mapper	1121100.JCM6294_549	NA	NA
UHGV-0159717_87	KOfam	K03791	K03791; putative chitinase	NA
UHGV-0159717_87	PHROG	phrog_181	endolysin	lysis
UHGV-0159717_87	UniRef90	UniRef90_A0A7H1MQA5	Glycoside hydrolase family 19 protein	NA
UHGV-0159717_87	eggNOG-mapper	160488.PP_3066	hmm pf00182	NA
UHGV-0159717_87	Pfam	PF00182	Chitinase class I	Glyco_hydro_19
UHGV-0159717_87	COG	COG3179	Chitinase, GH19 family	NA
UHGV-0159717_87	Structural annotation	PF00182, COG3179	NA	NA
UHGV-0159717_88	UniRef90	UniRef90_J9GTV3	Membrane protein	NA
UHGV-0159717_88	eggNOG-mapper	1121097.JCM15093_2703	NA	NA