UHGV-0159731

Genome information

Genome length 28,417 bps

CDS count 53

Completeness 66.13% (medium-quality)

geNomad score 0.9762

Prediction confidence Confident

Genome information
Genome ID	UHGV-0159731
vOTU ID	vOTU-027936
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_462152
BioSample	SAMN06111968
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	66.13% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	13
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9762
Virus hallmark genes (geNomad)	8
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	49.35
Jumbo phage	No

Genome content
Genome length	28,417 bps
GC content	51.17%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	53
CDS density	90.58%
Average CDS length	491.94 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0159731_1	eggNOG-mapper	1232443.BAIA02000078_gene24	NA	NA
UHGV-0159731_2	PHROG	phrog_556	minor head protein	head and packaging
UHGV-0159731_2	UniRef90	UniRef90_A0A2U1BEM0	Minor capsid protein	NA
UHGV-0159731_2	eggNOG-mapper	1226322.HMPREF1545_00054	Minor capsid protein	NA
UHGV-0159731_2	Pfam	PF11114	Minor capsid protein	Minor_capsid_2
UHGV-0159731_2	Structural annotation	PF11114, TIGR01725	NA	NA
UHGV-0159731_3	PHROG	phrog_3366	NA	unknown function
UHGV-0159731_3	eggNOG-mapper	1226322.HMPREF1545_00053	NA	NA
UHGV-0159731_3	Structural annotation	PF20536, TIGR01563	NA	NA
UHGV-0159731_4	PHROG	phrog_541	head-tail adaptor	connector
UHGV-0159731_4	eggNOG-mapper	1120998.AUFC01000030_gene2237	NA	NA
UHGV-0159731_5	UniRef90	UniRef90_A0A8J6J3F8	Cadherin-like beta sandwich domain-containing protein	NA
UHGV-0159731_5	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0159731_6	PHROG	phrog_10	major head protein	head and packaging
UHGV-0159731_6	UniRef90	UniRef90_U2SBS0	Phage capsid family protein	NA
UHGV-0159731_6	eggNOG-mapper	1226322.HMPREF1545_00050	Phage capsid family	NA
UHGV-0159731_6	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0159731_6	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0159731_6	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0159731_6	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0159731_7	PHROG	phrog_2303	head scaffolding protein	head and packaging
UHGV-0159731_7	eggNOG-mapper	1226322.HMPREF1545_00049	NA	NA
UHGV-0159731_7	AcrCatalog	cluster_74817	NA	NA
UHGV-0159731_8	Structural annotation	PF11607, MF_00436, NF011232, COG1923	NA	NA
UHGV-0159731_9	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0159731_9	UniRef90	UniRef90_A0A1C5N7V1	Phage minor capsid protein 2	NA
UHGV-0159731_9	eggNOG-mapper	1226322.HMPREF1545_00046	Phage minor capsid protein 2	NA
UHGV-0159731_9	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0159731_9	Pfam	PF15542	Bacterial toxin 50	Ntox50
UHGV-0159731_9	COG	COG2369	NA	NA
UHGV-0159731_9	Structural annotation	PF06152, PF15542, TIGR01641, COG2369	NA	NA
UHGV-0159731_10	PHROG	phrog_533	portal protein	head and packaging
UHGV-0159731_10	UniRef90	UniRef90_U2R2D2	Putative phage minor capsid protein	NA
UHGV-0159731_10	eggNOG-mapper	1226322.HMPREF1545_00044	NA	NA
UHGV-0159731_10	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0159731_10	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-0159731_11	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0159731_11	PHROG	phrog_2	terminase large subunit	head and packaging
UHGV-0159731_11	UniRef90	UniRef90_U2QJE0	Phage terminase, large subunit, PBSX family	NA
UHGV-0159731_11	eggNOG-mapper	1226322.HMPREF1545_00043	Phage terminase large subunit	NA
UHGV-0159731_11	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-0159731_11	Pfam	PF17289	Terminase RNaseH-like domain	Terminase_6C
UHGV-0159731_11	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0159731_11	COG	COG1783	Phage terminase large subunit	NA
UHGV-0159731_11	Structural annotation	PF04466, PF20454, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-0159731_12	UniRef90	UniRef90_U2R3C0	Nascent polypeptide-associated complex domain protein	NA
UHGV-0159731_12	eggNOG-mapper	1226322.HMPREF1545_00042	NA	NA
UHGV-0159731_12	Structural annotation	PF13542	NA	NA
UHGV-0159731_13	KOfam	K00571	E2.1.1.72; site-specific DNA-methyltransferase (adenine-specific) [EC:2.1.1.72]	NA
UHGV-0159731_13	PHROG	phrog_498	DNA methyltransferase	other
UHGV-0159731_13	UniRef90	UniRef90_A0A431IA37	Methyltransferase	NA
UHGV-0159731_13	eggNOG-mapper	1125725.HMPREF1325_1835	DNA methylase	NA
UHGV-0159731_13	PADLOC	MTase_II_00157	Type II methyltransferase	RM
UHGV-0159731_13	Pfam	PF01555	DNA methylase	N6_N4_Mtase
UHGV-0159731_13	COG	COG0863	DNA modification methylase	NA
UHGV-0159731_13	Structural annotation	PF01555, MF_01872, NF008572, COG0863	NA	NA
UHGV-0159731_14	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0159731_14	UniRef90	UniRef90_U2SK55	DNA-binding helix-turn-helix protein	NA
UHGV-0159731_14	eggNOG-mapper	1226322.HMPREF1545_00039	sequence-specific DNA binding	NA
UHGV-0159731_14	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0159731_14	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0159731_14	Structural annotation	PF01381, NF041951, COG1476	NA	NA
UHGV-0159731_15	PHROG	phrog_924	NA	unknown function
UHGV-0159731_15	UniRef90	UniRef90_UPI00195D1DCA	NA	NA
UHGV-0159731_15	Pfam	PF04448	NA	DUF551
UHGV-0159731_15	Structural annotation	PF04448	NA	NA
UHGV-0159731_16	PHROG	phrog_24517	NA	unknown function
UHGV-0159731_16	Structural annotation	TIGR03666	NA	NA
UHGV-0159731_17	PHROG	phrog_8684	NA	unknown function
UHGV-0159731_17	UniRef90	UniRef90_A0A1C7FQJ0	YopX domain-containing protein	NA
UHGV-0159731_17	eggNOG-mapper	1226322.HMPREF1545_00036	YopX protein	NA
UHGV-0159731_17	Structural annotation	PF09643, TIGR01671	NA	NA
UHGV-0159731_18	PHROG	phrog_801	endolysin; inhibits RNA polymerase	lysis
UHGV-0159731_18	UniRef90	UniRef90_A0A1C6B6A0	NA	NA
UHGV-0159731_18	eggNOG-mapper	1244856.K4PY83_9CAUD	Cytidine and deoxycytidylate deaminase zinc-binding region	NA
UHGV-0159731_18	Pfam	PF18909	dATP/dGTP diphosphohydrolase, N-terminal	dGTP_diPhyd_N
UHGV-0159731_18	Structural annotation	PF18909	NA	NA
UHGV-0159731_20	PHROG	phrog_1934	NA	unknown function
UHGV-0159731_20	UniRef90	UniRef90_UPI0018AC0226	zinc-finger-containing protein	NA
UHGV-0159731_20	eggNOG-mapper	397290.C810_01488	zinc-finger-containing domain	NA
UHGV-0159731_20	Pfam	PF11672	zinc-finger-containing domain	DUF3268
UHGV-0159731_20	Structural annotation	PF11672	NA	NA
UHGV-0159731_23	PHROG	phrog_22543	NA	unknown function
UHGV-0159731_25	PHROG	phrog_38832	NA	unknown function
UHGV-0159731_25	eggNOG-mapper	665956.HMPREF1032_03087	NA	NA
UHGV-0159731_28	PHROG	phrog_25732	NA	unknown function
UHGV-0159731_28	Structural annotation	NF011227	NA	NA
UHGV-0159731_29	PHROG	phrog_10714	NA	unknown function
UHGV-0159731_29	eggNOG-mapper	742738.HMPREF9460_04055	NA	NA
UHGV-0159731_30	UniRef90	UniRef90_UPI0018AC14ED	Lar family restriction alleviation protein	NA
UHGV-0159731_30	eggNOG-mapper	742738.HMPREF9460_04054	Restriction alleviation protein Lar	NA
UHGV-0159731_30	Structural annotation	PF14354, NF007260	NA	NA
UHGV-0159731_31	PHROG	phrog_4632	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0159731_31	UniRef90	UniRef90_A0A7X8IB41	RusA family crossover junction endodeoxyribonuclease	NA
UHGV-0159731_31	eggNOG-mapper	469604.HMPREF0946_00819	NA	NA
UHGV-0159731_31	Structural annotation	PF19595, NF007305, COG4570	NA	NA
UHGV-0159731_32	PHROG	phrog_9804	NA	unknown function
UHGV-0159731_32	UniRef90	UniRef90_UPI0018976F94	replicative helicase loader/inhibitor	NA
UHGV-0159731_32	eggNOG-mapper	1121344.JHZO01000003_gene981	Loader and inhibitor of phage G40P	NA
UHGV-0159731_32	Pfam	PF11417	Loader and inhibitor of phage G40P	Inhibitor_G39P
UHGV-0159731_32	Structural annotation	PF11417	NA	NA
UHGV-0159731_33	PHROG	phrog_16304	NA	unknown function
UHGV-0159731_33	UniRef90	UniRef90_UPI001E560709	NA	NA
UHGV-0159731_33	eggNOG-mapper	1035196.HMPREF9998_01752	NA	NA
UHGV-0159731_33	Pfam	PF19808	NA	DUF6291
UHGV-0159731_33	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0159731_33	Structural annotation	PF19808	NA	NA
UHGV-0159731_34	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0159731_34	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0159731_34	UniRef90	UniRef90_A0A8J7VJS5	Single-stranded DNA-binding protein	NA
UHGV-0159731_34	eggNOG-mapper	552398.HMPREF0866_02510	Single-stranded DNA-binding protein	NA
UHGV-0159731_34	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0159731_34	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0159731_34	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0159731_34	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0159731_34	Structural annotation	PF00436, MF_00984, NF005241, COG0629	NA	NA
UHGV-0159731_35	PHROG	phrog_4973	NA	unknown function
UHGV-0159731_35	UniRef90	UniRef90_UPI001D0904CC	helix-turn-helix domain-containing protein	NA
UHGV-0159731_35	eggNOG-mapper	1072685.IX83_07155	Helix-turn-helix domain	NA
UHGV-0159731_35	Pfam	PF14090	Helix-turn-helix domain	HTH_39
UHGV-0159731_35	Structural annotation	PF14090, NF040939, COG4738	NA	NA
UHGV-0159731_36	PHROG	phrog_7370	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0159731_36	UniRef90	UniRef90_A0A2Z4QA94	Recombination protein	NA
UHGV-0159731_36	eggNOG-mapper	445972.ANACOL_01826	HNH nucleases	NA
UHGV-0159731_36	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0159731_37	PHROG	phrog_72	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
UHGV-0159731_37	UniRef90	UniRef90_UPI001F3F3E5C	recombination protein NinB	NA
UHGV-0159731_37	eggNOG-mapper	445972.ANACOL_01825	NA	NA
UHGV-0159731_37	Structural annotation	PF05772	NA	NA
UHGV-0159731_38	PHROG	phrog_155	Erf-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0159731_38	UniRef90	UniRef90_UPI001C126E67	ERF family protein	NA
UHGV-0159731_38	eggNOG-mapper	97138.C820_00777	ERF superfamily	NA
UHGV-0159731_38	Pfam	PF04404	ERF superfamily	ERF
UHGV-0159731_38	Structural annotation	PF04404, COG4712	NA	NA
UHGV-0159731_41	Structural annotation	PF13560	NA	NA
UHGV-0159731_43	Structural annotation	PF12728, NF040990, COG3311	NA	NA
UHGV-0159731_47	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0159731_47	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0159731_47	UniRef90	UniRef90_G9YR83	DNA-binding helix-turn-helix protein	NA
UHGV-0159731_47	eggNOG-mapper	411471.SUBVAR_05818	sequence-specific DNA binding	NA
UHGV-0159731_47	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0159731_47	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0159731_47	Structural annotation	PF01381, MF_00535, NF007257, COG1476	NA	NA
UHGV-0159731_49	PHROG	phrog_4980	superinfection exclusion	moron, auxiliary metabolic gene and host takeover
UHGV-0159731_49	eggNOG-mapper	411462.DORLON_00822	NA	NA
UHGV-0159731_49	Pfam	PF07553	Host cell surface-exposed lipoprotein	Lipoprotein_Ltp
UHGV-0159731_51	KOfam	K14623	dinD; DNA-damage-inducible protein D	NA
UHGV-0159731_51	PHROG	phrog_15286	NA	unknown function
UHGV-0159731_51	UniRef90	UniRef90_A0A1C5N3L4	Bro-N domain-containing protein	NA
UHGV-0159731_51	eggNOG-mapper	1195236.CTER_1513	BRO family, N-terminal domain	NA
UHGV-0159731_51	Pfam	PF02498	BRO family, N-terminal domain	Bro-N
UHGV-0159731_51	COG	COG3617	Prophage antirepressor	NA
UHGV-0159731_51	Structural annotation	PF09669, NF008573, COG3617	NA	NA
UHGV-0159731_52	KOfam	K14059	int; integrase	NA
UHGV-0159731_52	PHROG	phrog_1	integrase	integration and excision
UHGV-0159731_52	UniRef90	UniRef90_A0A1C5N3H1	Integrase	NA
UHGV-0159731_52	eggNOG-mapper	1321814.HMPREF9089_00905	Phage integrase, N-terminal SAM-like domain	NA
UHGV-0159731_52	Pfam	PF14659	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
UHGV-0159731_52	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0159731_52	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0159731_52	Structural annotation	PF00589, PF14659, MF_02055, TIGR02224, COG4974	NA	NA
UHGV-0159731_53	PHROG	phrog_559	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0159731_53	UniRef90	UniRef90_A0A1M4ZQS8	Probable Zinc-ribbon domain-containing protein	NA
UHGV-0159731_53	eggNOG-mapper	180332.JTGN01000003_gene2023	Probable Zinc-ribbon domain	NA
UHGV-0159731_53	Pfam	PF14311	Probable Zinc-ribbon domain	DUF4379
UHGV-0159731_53	COG	COG0553	Superfamily II DNA or RNA helicase, SNF2 family	NA