UHGV-0159771

Genome information

Genome length 29,131 bps

CDS count 47

Completeness 72.30% (medium-quality)

geNomad score 0.9808

Prediction confidence Confident

Genome information
Genome ID	UHGV-0159771
vOTU ID	vOTU-027939
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_489243
BioSample	SAMN06110242
Country	Netherlands
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	72.30% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	13
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9808
Virus hallmark genes (geNomad)	8
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	11.65
Jumbo phage	No

Genome content
Genome length	29,131 bps
GC content	42.31%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	47
CDS density	90.65%
Average CDS length	564.32 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0159771_1	PHROG	phrog_6616	tail protein	tail
UHGV-0159771_1	eggNOG-mapper	476272.RUMHYD_01992	NA	NA
UHGV-0159771_2	PHROG	phrog_1194	NA	unknown function
UHGV-0159771_2	eggNOG-mapper	33035.JPJF01000093_gene2242	NA	NA
UHGV-0159771_2	Structural annotation	PF20458, TIGR02126, COG3499	NA	NA
UHGV-0159771_3	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-0159771_3	UniRef90	UniRef90_A0A1C5RGR7	Phage-related protein	NA
UHGV-0159771_3	eggNOG-mapper	33035.JPJF01000093_gene2243	phage tail tape measure protein	NA
UHGV-0159771_3	COG	COG3941	Phage tail tape-measure protein, controls tail length	NA
UHGV-0159771_3	Structural annotation	PF20155, TIGR01760, COG3941	NA	NA
UHGV-0159771_4	PHROG	phrog_8355	NA	unknown function
UHGV-0159771_4	UniRef90	UniRef90_UPI001F2CFAB2	bacteriophage Gp15 family protein	NA
UHGV-0159771_4	eggNOG-mapper	483218.BACPEC_01147	Bacteriophage Gp15 protein	NA
UHGV-0159771_4	Structural annotation	PF06854	NA	NA
UHGV-0159771_5	PHROG	phrog_8300	NA	unknown function
UHGV-0159771_5	eggNOG-mapper	585501.HMPREF6123_0828	NA	NA
UHGV-0159771_5	Structural annotation	PF06854	NA	NA
UHGV-0159771_6	PHROG	phrog_820	major tail protein	tail
UHGV-0159771_6	eggNOG-mapper	33035.JPJF01000093_gene2246	NA	NA
UHGV-0159771_6	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-0159771_7	PHROG	phrog_2595	head-tail connector protein	connector
UHGV-0159771_7	UniRef90	UniRef90_UPI001C0EB705	minor capsid protein	NA
UHGV-0159771_7	eggNOG-mapper	483218.BACPEC_01150	NA	NA
UHGV-0159771_7	Pfam	PF12691	Bacteriophage minor capsid protein	Minor_capsid_3
UHGV-0159771_7	Structural annotation	PF12691, COG5003	NA	NA
UHGV-0159771_8	PHROG	phrog_556	minor head protein	head and packaging
UHGV-0159771_8	eggNOG-mapper	742740.HMPREF9474_03509	NA	NA
UHGV-0159771_9	PHROG	phrog_8710	NA	unknown function
UHGV-0159771_9	eggNOG-mapper	1304866.K413DRAFT_0782	NA	NA
UHGV-0159771_9	Structural annotation	PF10665, TIGR01563, COG5614	NA	NA
UHGV-0159771_10	PHROG	phrog_541	head-tail adaptor	connector
UHGV-0159771_10	eggNOG-mapper	1298920.KI911353_gene4848	NA	NA
UHGV-0159771_11	PHROG	phrog_1378	NA	unknown function
UHGV-0159771_11	eggNOG-mapper	742740.HMPREF9474_03506	NA	NA
UHGV-0159771_12	PHROG	phrog_422	major head protein	head and packaging
UHGV-0159771_12	UniRef90	UniRef90_UPI000E4423C7	capsid protein	NA
UHGV-0159771_12	eggNOG-mapper	33035.JPJF01000093_gene2252	NA	NA
UHGV-0159771_12	Structural annotation	PF19821, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-0159771_13	PHROG	phrog_2303	head scaffolding protein	head and packaging
UHGV-0159771_13	eggNOG-mapper	33035.JPJF01000093_gene2253	NA	NA
UHGV-0159771_15	PHROG	phrog_1048	NA	unknown function
UHGV-0159771_15	UniRef90	UniRef90_UPI000E44ABF0	NA	NA
UHGV-0159771_15	eggNOG-mapper	457412.RSAG_01107	NA	NA
UHGV-0159771_15	Pfam	PF11195	NA	DUF2829
UHGV-0159771_15	dbAPIS	APIS029	Tad2 is a "sponge" that sequesters the immune signaling molecules produced by Thoeris TIR-domain proteins in response to phage.	NA
UHGV-0159771_15	Structural annotation	PF11195	NA	NA
UHGV-0159771_16	UniRef90	UniRef90_F5RJP5	Chaperonin	NA
UHGV-0159771_16	eggNOG-mapper	1200557.JHWV01000022_gene2459	NA	NA
UHGV-0159771_16	Structural annotation	PF02699, MF_00369, TIGR00739, COG1862	NA	NA
UHGV-0159771_17	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0159771_17	UniRef90	UniRef90_A0A1C5VPR8	ATPase involved in DNA repair	NA
UHGV-0159771_17	eggNOG-mapper	33035.JPJF01000093_gene2255	NA	NA
UHGV-0159771_17	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0159771_17	Pfam	PF21814	NA	DUF6883
UHGV-0159771_17	COG	COG5585	Putative phage head morphogenesis protein, F of phage Mu or gp7 of SPP1	NA
UHGV-0159771_18	PHROG	phrog_25639	NA	unknown function
UHGV-0159771_18	eggNOG-mapper	742740.HMPREF9474_03502	NA	NA
UHGV-0159771_19	PHROG	phrog_533	portal protein	head and packaging
UHGV-0159771_19	UniRef90	UniRef90_UPI000E435BAD	capsid protein	NA
UHGV-0159771_19	eggNOG-mapper	742740.HMPREF9474_03501	NA	NA
UHGV-0159771_19	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-0159771_20	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0159771_20	PHROG	phrog_2	terminase large subunit	head and packaging
UHGV-0159771_20	UniRef90	UniRef90_A0A415L5G2	Terminase	NA
UHGV-0159771_20	eggNOG-mapper	1304866.K413DRAFT_0811	Phage terminase, large subunit, PBSX family	NA
UHGV-0159771_20	COG	COG1783	Phage terminase large subunit	NA
UHGV-0159771_20	Structural annotation	PF03237, PF17289, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-0159771_21	KOfam	K07474	xtmA; phage terminase small subunit	NA
UHGV-0159771_21	PHROG	phrog_51	terminase small subunit	head and packaging
UHGV-0159771_21	UniRef90	UniRef90_A0A415L5B5	Terminase small subunit	NA
UHGV-0159771_21	eggNOG-mapper	1298920.KI911353_gene4857	Terminase small subunit	NA
UHGV-0159771_21	Pfam	PF03592	Terminase small subunit	Terminase_2
UHGV-0159771_21	COG	COG3728	Phage terminase, small subunit	NA
UHGV-0159771_21	Structural annotation	PF03592, COG3728	NA	NA
UHGV-0159771_22	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0159771_22	UniRef90	UniRef90_UPI000931D7F9	RNA polymerase subunit sigma-70	NA
UHGV-0159771_22	eggNOG-mapper	411459.RUMOBE_00943	NA	NA
UHGV-0159771_22	Structural annotation	PF02996	NA	NA
UHGV-0159771_23	PHROG	phrog_6568	NA	unknown function
UHGV-0159771_23	AcrCatalog	cluster_48338	NA	NA
UHGV-0159771_24	eggNOG-mapper	457412.RSAG_01159	NA	NA
UHGV-0159771_25	UniRef90	UniRef90_UPI001898116D	NA	NA
UHGV-0159771_25	Structural annotation	PF04448	NA	NA
UHGV-0159771_26	UniRef90	UniRef90_A0A173WN74	Sigma-70, region 4	NA
UHGV-0159771_26	Pfam	PF18024	Helix-turn-helix domain	HTH_50
UHGV-0159771_26	Pfam	PF13384	Homeodomain-like domain	HTH_23
UHGV-0159771_26	Structural annotation	PF01710, NF040595	NA	NA
UHGV-0159771_28	PHROG	phrog_23707	NA	unknown function
UHGV-0159771_28	UniRef90	UniRef90_UPI00156E1A02	alanine racemase	NA
UHGV-0159771_28	eggNOG-mapper	411483.FAEPRAA2165_01889	NA	NA
UHGV-0159771_29	PHROG	phrog_7566	NA	unknown function
UHGV-0159771_29	eggNOG-mapper	411459.RUMOBE_00948	NA	NA
UHGV-0159771_30	eggNOG-mapper	610130.Closa_0727	NA	NA
UHGV-0159771_31	PHROG	phrog_17842	NA	unknown function
UHGV-0159771_32	KOfam	K03497	parB, spo0J; ParB family transcriptional regulator, chromosome partitioning protein	NA
UHGV-0159771_32	PHROG	phrog_15077	NA	unknown function
UHGV-0159771_32	UniRef90	UniRef90_A0A1C5REH6	ParB/RepB/Spo0J family partition protein	NA
UHGV-0159771_32	eggNOG-mapper	1235792.C808_00610	ParB-like nuclease domain	NA
UHGV-0159771_32	Pfam	PF02195	ParB/Sulfiredoxin domain	ParBc
UHGV-0159771_32	COG	COG1475	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	NA
UHGV-0159771_32	Structural annotation	PF02195, MF_02015, TIGR04285, COG1475	NA	NA
UHGV-0159771_33	KOfam	K03496	parA, soj; chromosome partitioning protein	NA
UHGV-0159771_33	PHROG	phrog_164	ParA-like partition protein	DNA, RNA and nucleotide metabolism
UHGV-0159771_33	UniRef90	UniRef90_A0A1C5REE7	Sporulation initiation inhibitor protein soj	NA
UHGV-0159771_33	eggNOG-mapper	97139.C824_00725	Cellulose biosynthesis protein BcsQ	NA
UHGV-0159771_33	Pfam	PF13614	AAA domain	AAA_31
UHGV-0159771_33	COG	COG1192	ParA-like ATPase involved in chromosome/plasmid partitioning or cellulose biosynthesis protein BcsQ	NA
UHGV-0159771_33	Structural annotation	PF13614, MF_00533, TIGR03453, COG1192	NA	NA
UHGV-0159771_34	PHROG	phrog_531	Rnase H	DNA, RNA and nucleotide metabolism
UHGV-0159771_34	UniRef90	UniRef90_A0A1C5RDL1	Ribonuclease H	NA
UHGV-0159771_34	eggNOG-mapper	411461.DORFOR_01140	RNA-DNA hybrid ribonuclease activity	NA
UHGV-0159771_34	COG	COG0328	Ribonuclease HI	NA
UHGV-0159771_34	Structural annotation	PF00075, MF_00042, NF001236, COG0328	NA	NA
UHGV-0159771_35	PHROG	phrog_3584	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0159771_35	UniRef90	UniRef90_UPI001D0EB55A	helitron helicase-like domain-containing protein	NA
UHGV-0159771_35	eggNOG-mapper	483218.BACPEC_01173	NA	NA
UHGV-0159771_35	Structural annotation	PF21578, NF041486	NA	NA
UHGV-0159771_41	UniRef90	UniRef90_UPI001D0976C2	actin family protein	NA
UHGV-0159771_42	PHROG	phrog_585	NA	unknown function
UHGV-0159771_42	UniRef90	UniRef90_UPI001654CF6A	NA	NA
UHGV-0159771_42	eggNOG-mapper	1235798.C817_04760	NA	NA
UHGV-0159771_42	Pfam	PF10711	NA	DUF2513
UHGV-0159771_42	Structural annotation	PF10711, TIGR04176, COG5045	NA	NA
UHGV-0159771_44	KOfam	K07729	K07729; putative transcriptional regulator	NA
UHGV-0159771_44	PHROG	phrog_5823	transcriptional regulator	transcription regulation
UHGV-0159771_44	UniRef90	UniRef90_A0A415L5I4	Helix-turn-helix domain-containing protein	NA
UHGV-0159771_44	eggNOG-mapper	1120978.KB894087_gene408	Cro/C1-type HTH DNA-binding domain	NA
UHGV-0159771_44	PADLOC	retron_type_VI_hth_cluster2_1	NA	Retron
UHGV-0159771_44	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0159771_44	Structural annotation	PF01381, NF041951, COG1396	NA	NA
UHGV-0159771_45	KOfam	K22299	rghR; HTH-type transcriptional regulator, competence development regulator	NA
UHGV-0159771_45	UniRef90	UniRef90_UPI000E46C786	helix-turn-helix domain-containing protein	NA
UHGV-0159771_45	eggNOG-mapper	1121115.AXVN01000006_gene2173	sequence-specific DNA binding	NA
UHGV-0159771_45	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0159771_45	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0159771_45	Structural annotation	PF13560, NF041951, COG1396	NA	NA
UHGV-0159771_47	PHROG	phrog_87	metallo-protease	other
UHGV-0159771_47	UniRef90	UniRef90_UPI001D07A9BA	ImmA/IrrE family metallo-endopeptidase	NA
UHGV-0159771_47	eggNOG-mapper	457412.RSAG_00798	Zn peptidase	NA
UHGV-0159771_47	COG	COG2856	Zn-dependent peptidase ImmA, M78 family	NA
UHGV-0159771_47	Structural annotation	PF06114, COG2856	NA	NA