UHGV-0159783

Genome information

Genome length 44,587 bps

CDS count 61

Completeness 71.34% (medium-quality)

geNomad score 0.9777

Prediction confidence Confident

Genome information
Genome ID	UHGV-0159783
vOTU ID	vOTU-015863
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_447467
BioSample	SAMN05971466
Country	United States
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	71.34% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	16
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9777
Virus hallmark genes (geNomad)	7
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	38.35
Jumbo phage	No

Genome content
Genome length	44,587 bps
GC content	48.47%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	61
CDS density	88.26%
Average CDS length	647.90 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0159783_2	UniRef90	UniRef90_UPI00047F33D6	Hint domain-containing protein	NA
UHGV-0159783_2	eggNOG-mapper	1232428.CAVO010000067_gene416	NA	NA
UHGV-0159783_2	NCBIFam	TIGR01443.1	intein C-terminal splicing region	NA
UHGV-0159783_2	Structural annotation	PF01079, NF038136	NA	NA
UHGV-0159783_3	Structural annotation	PF00765, MF_02210, NF007644, COG2153	NA	NA
UHGV-0159783_4	eggNOG-mapper	1401067.HMPREF0872_03755	NA	NA
UHGV-0159783_4	Structural annotation	PF11134, MF_03008, NF010237, TIGR04362, COG4257	NA	NA
UHGV-0159783_5	UniRef90	UniRef90_A0A2S0M851	TarH domain-containing protein	NA
UHGV-0159783_6	PHROG	phrog_34863	NA	unknown function
UHGV-0159783_6	UniRef90	UniRef90_UPI001D017339	chitosanase	NA
UHGV-0159783_6	eggNOG-mapper	1273103.NM10_00929	LysM domain	NA
UHGV-0159783_6	Pfam	PF21277	Type VI secretion system spike protein VgrG3-like, C-terminal	T6SS_VgrG3-like_C
UHGV-0159783_6	COG	COG1388	LysM repeat	NA
UHGV-0159783_6	Structural annotation	PF21277	NA	NA
UHGV-0159783_7	PHROG	phrog_28789	NA	unknown function
UHGV-0159783_7	UniRef90	UniRef90_R7MZN4	Conserved domain protein	NA
UHGV-0159783_7	eggNOG-mapper	1273103.NM10_00934	NA	NA
UHGV-0159783_9	KOfam	K14059	int; integrase	NA
UHGV-0159783_9	PHROG	phrog_1	integrase	integration and excision
UHGV-0159783_9	UniRef90	UniRef90_UPI0004143D65	tyrosine-type recombinase/integrase	NA
UHGV-0159783_9	eggNOG-mapper	568816.Acin_1821	Phage integrase family	NA
UHGV-0159783_9	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0159783_9	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0159783_9	Structural annotation	PF00589, MF_01808, NF007246, COG4974	NA	NA
UHGV-0159783_10	PHROG	phrog_24267	NA	unknown function
UHGV-0159783_10	UniRef90	UniRef90_G4Q8U0	Side tail fiber protein from lambdoid prophage Rac	NA
UHGV-0159783_10	eggNOG-mapper	1054968.G0X4V0_9CAUD	N-acetylmuramoyl-L-alanine amidase activity	NA
UHGV-0159783_11	eggNOG-mapper	1232428.CAVO010000067_gene418	NA	NA
UHGV-0159783_11	Structural annotation	PF14301	NA	NA
UHGV-0159783_13	PHROG	phrog_5717	tail protein	tail
UHGV-0159783_13	UniRef90	UniRef90_UPI0008EFFA34	phage tail protein	NA
UHGV-0159783_13	eggNOG-mapper	568816.Acin_1301	tail collar domain protein	NA
UHGV-0159783_13	COG	COG4675	Phage tail collar domain	NA
UHGV-0159783_14	eggNOG-mapper	1150626.PHAMO_80093	extracellular polysaccharide biosynthetic process	NA
UHGV-0159783_14	COG	COG3206	Exopolysaccharide export protein/domain GumC/Wzc1	NA
UHGV-0159783_15	PHROG	phrog_5417	NA	unknown function
UHGV-0159783_15	UniRef90	UniRef90_H8FY63	Putative BcepGomrgp18	NA
UHGV-0159783_15	eggNOG-mapper	1589747.A0A0B5A4F6_9CAUD	NA	NA
UHGV-0159783_15	Structural annotation	PF12571	NA	NA
UHGV-0159783_16	eggNOG-mapper	1232428.CAVO010000067_gene421	cellulase activity	NA
UHGV-0159783_16	COG	COG4733	Phage-related protein, tail protein J	NA
UHGV-0159783_16	Structural annotation	PF18001, PF01828, PF16389, MF_01905, NF010681, COG3401, COG3506	NA	NA
UHGV-0159783_17	eggNOG-mapper	1485543.JMME01000020_gene785	NA	NA
UHGV-0159783_17	Structural annotation	PF20387	NA	NA
UHGV-0159783_18	Structural annotation	PF20387	NA	NA
UHGV-0159783_20	PHROG	phrog_1328	major head protein	head and packaging
UHGV-0159783_20	UniRef90	UniRef90_UPI000413677B	NA	NA
UHGV-0159783_20	eggNOG-mapper	1232428.CAVO010000067_gene423	NA	NA
UHGV-0159783_20	Pfam	PF17236	NA	DUF5309
UHGV-0159783_20	Structural annotation	PF17236, MF_04133, NF033394, COG4834	NA	NA
UHGV-0159783_21	eggNOG-mapper	1232428.CAVO010000067_gene424	NA	NA
UHGV-0159783_23	PHROG	phrog_1216	portal protein	head and packaging
UHGV-0159783_23	UniRef90	UniRef90_A0A0U1L376	Phage portal protein	NA
UHGV-0159783_23	eggNOG-mapper	1232428.CAVO010000067_gene425	Membrane	NA
UHGV-0159783_23	COG	COG3064	Membrane protein TolA involved in colicin uptake	NA
UHGV-0159783_23	Structural annotation	PF16510, MF_04120, TIGR01538, COG4383	NA	NA
UHGV-0159783_24	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0159783_24	PHROG	phrog_2	terminase large subunit	head and packaging
UHGV-0159783_24	UniRef90	UniRef90_A0A1F8V9T6	Terminase_3 domain-containing protein	NA
UHGV-0159783_24	eggNOG-mapper	1232428.CAVO010000067_gene427	DNA packaging	NA
UHGV-0159783_24	COG	COG1783	Phage terminase large subunit	NA
UHGV-0159783_24	Structural annotation	PF03354, PF17289, MF_04146, TIGR01547, COG4373	NA	NA
UHGV-0159783_25	PHROG	phrog_309	terminase small subunit	head and packaging
UHGV-0159783_25	UniRef90	UniRef90_A0A2S0M9J8	Transposase	NA
UHGV-0159783_25	eggNOG-mapper	374526.A5GYP7_9CAUD	endonuclease activity	NA
UHGV-0159783_25	Pfam	PF01527	Transposase	HTH_Tnp_1
UHGV-0159783_25	Structural annotation	PF07141	NA	NA
UHGV-0159783_26	PHROG	phrog_1233	NA	unknown function
UHGV-0159783_26	UniRef90	UniRef90_UPI000C850486	ImmA/IrrE family metallo-endopeptidase	NA
UHGV-0159783_26	eggNOG-mapper	1540257.JQMW01000009_gene3748	NA	NA
UHGV-0159783_26	Structural annotation	PF13058	NA	NA
UHGV-0159783_29	Structural annotation	PF20075, TIGR02612	NA	NA
UHGV-0159783_30	eggNOG-mapper	1064535.MELS_1121	nuclear chromosome segregation	NA
UHGV-0159783_30	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-0159783_31	eggNOG-mapper	401526.TcarDRAFT_1279	phage transcriptional regulator, RinA family	NA
UHGV-0159783_31	Structural annotation	PF05263, MF_00245, TIGR01636, COG2739	NA	NA
UHGV-0159783_32	KOfam	K01493	comEB; dCMP deaminase [EC:3.5.4.12]	NA
UHGV-0159783_32	PHROG	phrog_174	dCMP deaminase	DNA, RNA and nucleotide metabolism
UHGV-0159783_32	UniRef90	UniRef90_UPI00197DB886	dCMP deaminase family protein	NA
UHGV-0159783_32	eggNOG-mapper	693746.OBV_35660	MafB19-like deaminase	NA
UHGV-0159783_32	PADLOC	dCTPase	NA	NA
UHGV-0159783_32	Pfam	PF00383	Cytidine and deoxycytidylate deaminase zinc-binding region	dCMP_cyt_deam_1
UHGV-0159783_32	COG	COG2131	Deoxycytidylate deaminase	NA
UHGV-0159783_32	Structural annotation	PF00383, TIGR02571, COG2131	NA	NA
UHGV-0159783_34	PHROG	phrog_419	NA	unknown function
UHGV-0159783_34	UniRef90	UniRef90_A0A096BXT9	Sugar ABC transporter substrate-binding protein	NA
UHGV-0159783_34	eggNOG-mapper	203119.Cthe_2457	NA	NA
UHGV-0159783_37	Structural annotation	PF07867, MF_01302_B, NF001109	NA	NA
UHGV-0159783_38	KOfam	K01160	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	NA
UHGV-0159783_38	PHROG	phrog_34	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0159783_38	UniRef90	UniRef90_A0A2S0M9F1	RusA family crossover junction endodeoxyribonuclease	NA
UHGV-0159783_38	eggNOG-mapper	1273103.NM10_01114	Endodeoxyribonuclease RusA	NA
UHGV-0159783_38	Pfam	PF05866	Endodeoxyribonuclease RusA	RusA
UHGV-0159783_38	Structural annotation	PF05866, NF007305, COG4570	NA	NA
UHGV-0159783_40	PHROG	phrog_236	nucleotide kinase	other
UHGV-0159783_40	UniRef90	UniRef90_UPI001F0F7AF9	NA	NA
UHGV-0159783_40	eggNOG-mapper	706434.HMPREF9429_00542	NA	NA
UHGV-0159783_40	Pfam	PF11753	NA	DUF3310
UHGV-0159783_41	KOfam	K00558	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	NA
UHGV-0159783_41	PHROG	phrog_116	DNA methyltransferase	other
UHGV-0159783_41	UniRef90	UniRef90_S7J909	Cytosine-specific methyltransferase	NA
UHGV-0159783_41	eggNOG-mapper	1273103.NM10_02362	Belongs to the class I-like SAM-binding methyltransferase superfamily. C5-methyltransferase family	NA
UHGV-0159783_41	PADLOC	MTase_II_00058	Type II methyltransferase	RM
UHGV-0159783_41	Pfam	PF00145	C-5 cytosine-specific DNA methylase	DNA_methylase
UHGV-0159783_41	NCBIFam	TIGR00675.1	DNA (cytosine-5-)-methyltransferase	NA
UHGV-0159783_41	COG	COG0270	DNA-cytosine methylase	NA
UHGV-0159783_41	Structural annotation	PF00145, TIGR00675, COG0270	NA	NA
UHGV-0159783_42	UniRef90	UniRef90_UPI001474421D	NA	NA
UHGV-0159783_42	eggNOG-mapper	1273103.NM10_02357	Protein conserved in bacteria	NA
UHGV-0159783_42	Pfam	PF07866	NA	DUF1653
UHGV-0159783_42	COG	COG4728	NA	NA
UHGV-0159783_42	Structural annotation	PF07866, COG4728	NA	NA
UHGV-0159783_43	Structural annotation	PF02482, TIGR00741, COG1544	NA	NA
UHGV-0159783_44	KOfam	K01520	dut, DUT; dUTP pyrophosphatase [EC:3.6.1.23]	NA
UHGV-0159783_44	PHROG	phrog_135	dUTPase	DNA, RNA and nucleotide metabolism
UHGV-0159783_44	UniRef90	UniRef90_A0A2S0MAB6	dUTP diphosphatase	NA
UHGV-0159783_44	eggNOG-mapper	706434.HMPREF9429_00398	This enzyme is involved in nucleotide metabolism it produces dUMP, the immediate precursor of thymidine nucleotides and it decreases the intracellular concentration of dUTP so that uracil cannot be incorporated into DNA	NA
UHGV-0159783_44	Pfam	PF00692	dUTPase	dUTPase
UHGV-0159783_44	COG	COG0756	dUTP pyrophosphatase (dUTPase)	NA
UHGV-0159783_44	Structural annotation	PF00692, MF_00116, TIGR00576, COG0756	NA	NA
UHGV-0159783_45	KOfam	K03530	hupB; DNA-binding protein HU-beta	NA
UHGV-0159783_45	PHROG	phrog_379	DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0159783_45	UniRef90	UniRef90_A0A2S0M9B9	HU family DNA-binding protein	NA
UHGV-0159783_45	eggNOG-mapper	177439.DP1422	Histone-like DNA-binding protein which is capable of wrapping DNA to stabilize it, and thus to prevent its denaturation under extreme environmental conditions	NA
UHGV-0159783_45	Pfam	PF00216	Bacterial DNA-binding protein	Bac_DNA_binding
UHGV-0159783_45	COG	COG0776	Bacterial nucleoid DNA-binding protein IHF-alpha	NA
UHGV-0159783_45	Structural annotation	PF00216, MF_00381, NF007945, COG0776	NA	NA
UHGV-0159783_46	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0159783_46	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0159783_46	UniRef90	UniRef90_A0A2S0M9E2	Single-stranded DNA-binding protein	NA
UHGV-0159783_46	eggNOG-mapper	1232428.CAVO010000067_gene437	single-stranded DNA binding	NA
UHGV-0159783_46	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0159783_46	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0159783_46	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0159783_46	Structural annotation	PF00436, MF_00984, NF005406, COG0629	NA	NA
UHGV-0159783_47	eggNOG-mapper	760568.Desku_0919	NA	NA
UHGV-0159783_47	Structural annotation	PF03787, TIGR02581, COG1604	NA	NA
UHGV-0159783_48	PHROG	phrog_37395	NA	unknown function
UHGV-0159783_49	Pfam	PF18912	Double zinc ribbon domain	DZR_2
UHGV-0159783_50	Structural annotation	PF11417	NA	NA
UHGV-0159783_51	PHROG	phrog_15768	NA	unknown function
UHGV-0159783_51	UniRef90	UniRef90_A0A2S0M9A1	Helix-turn-helix domain-containing protein	NA
UHGV-0159783_51	eggNOG-mapper	1232428.CAVO010000067_gene439	NA	NA
UHGV-0159783_51	Structural annotation	PF13730, MF_01819, NF038251, COG1846	NA	NA
UHGV-0159783_52	PHROG	phrog_72	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
UHGV-0159783_52	UniRef90	UniRef90_R5BGH3	Conserved domain protein	NA
UHGV-0159783_52	eggNOG-mapper	445972.ANACOL_01825	NA	NA
UHGV-0159783_53	PHROG	phrog_155	Erf-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0159783_53	UniRef90	UniRef90_A0A2S0MAE8	ERF superfamily protein	NA
UHGV-0159783_53	eggNOG-mapper	929506.CbC4_1193	ERF superfamily	NA
UHGV-0159783_53	Pfam	PF04404	ERF superfamily	ERF
UHGV-0159783_53	Structural annotation	PF04404, TIGR00607, COG4712	NA	NA
UHGV-0159783_54	PHROG	phrog_674	NA	unknown function
UHGV-0159783_54	UniRef90	UniRef90_A0A2S0M9A8	NA	NA
UHGV-0159783_54	eggNOG-mapper	1280689.AUJC01000003_gene937	NA	NA
UHGV-0159783_54	Pfam	PF07083	NA	DUF1351
UHGV-0159783_56	PHROG	phrog_25045	NA	unknown function
UHGV-0159783_56	UniRef90	UniRef90_A0A2S0M9C6	LysM domain-containing protein	NA
UHGV-0159783_56	eggNOG-mapper	1380354.JIAN01000007_gene84	PFAM Peptidoglycan-binding lysin domain	NA
UHGV-0159783_56	Pfam	PF01476	LysM domain	LysM
UHGV-0159783_56	COG	COG1388	LysM repeat	NA
UHGV-0159783_56	Structural annotation	PF01476, MF_02014, NF010723	NA	NA
UHGV-0159783_57	PHROG	phrog_7735	excisionase	integration and excision
UHGV-0159783_57	Structural annotation	PF12728, NF033787	NA	NA
UHGV-0159783_58	KOfam	K07741	antB; anti-repressor protein	NA
UHGV-0159783_58	PHROG	phrog_130	anti-repressor Ant	transcription regulation
UHGV-0159783_58	UniRef90	UniRef90_UPI001475C7F0	phage antirepressor KilAC domain-containing protein	NA
UHGV-0159783_58	eggNOG-mapper	1151292.QEW_0652	BRO family, N-terminal domain	NA
UHGV-0159783_58	Pfam	PF02498	BRO family, N-terminal domain	Bro-N
UHGV-0159783_58	Pfam	PF03374	Phage antirepressor protein KilAC domain	ANT
UHGV-0159783_58	COG	COG3617	Prophage antirepressor	NA
UHGV-0159783_58	Structural annotation	PF03374, PF02498, COG3645	NA	NA
UHGV-0159783_59	UniRef90	UniRef90_A0A2S0M9G3	XRE family transcriptional regulator	NA
UHGV-0159783_59	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-0159783_59	COG	COG3655	DNA-binding transcriptional regulator, XRE family	NA
UHGV-0159783_59	Structural annotation	PF01381, NF041951, COG1396	NA	NA
UHGV-0159783_61	Structural annotation	PF13601, TIGR04176, COG1846	NA	NA