UHGV-0159798

Genome information

Genome length 17,172 bps

CDS count 22

Completeness 100.00% (complete)

geNomad score 0.9767

Prediction confidence Confident

Genome information
Genome ID	UHGV-0159798
vOTU ID	vOTU-046280
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_485226
BioSample	SAMN06110456
Country	Netherlands
Virus prediction confidence	Confident

Quality assessment
CheckV method	ITR
CheckV completeness	100.00% (complete)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	10
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9767
Virus hallmark genes (geNomad)	4
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	31.82
Jumbo phage	No

Genome content
Genome length	17,172 bps
GC content	31.81%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	22
CDS density	93.55%
Average CDS length	731.86 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0159798_1	Structural annotation	TIGR02436	NA	NA
UHGV-0159798_4	PHROG	phrog_2150	terminase	head and packaging
UHGV-0159798_4	UniRef90	UniRef90_A0A3G8F2F5	DNA encapsidation ATPase	NA
UHGV-0159798_4	eggNOG-mapper	10753.B7SSN7_BPNF	Podovirus DNA encapsidation protein (Gp16)	NA
UHGV-0159798_4	Pfam	PF05894	Podovirus DNA encapsidation protein (Gp16)	Podovirus_Gp16
UHGV-0159798_4	Structural annotation	PF05894, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0159798_5	PHROG	phrog_1309	endolysin	lysis
UHGV-0159798_5	UniRef90	UniRef90_A8RBX0	CHAP domain protein	NA
UHGV-0159798_5	eggNOG-mapper	428127.EUBDOL_01204	hydrolase, family 25	NA
UHGV-0159798_5	Pfam	PF08460	Bacterial SH3 domain	SH3_5
UHGV-0159798_5	COG	COG3757	Lyzozyme M1 (1,4-beta-N-acetylmuramidase), GH25 family	NA
UHGV-0159798_5	Structural annotation	PF08460, PF06940, COG3942	NA	NA
UHGV-0159798_6	PHROG	phrog_3225	adaptor Ad4	connector
UHGV-0159798_6	eggNOG-mapper	10756.TUB11_BPPH2	NA	NA
UHGV-0159798_7	PHROG	phrog_2038	upper collar connector	connector
UHGV-0159798_7	UniRef90	UniRef90_A0A5Q2WB79	Upper collar protein	NA
UHGV-0159798_7	eggNOG-mapper	10753.B7SSN1_BPNF	Phage Connector (GP10)	NA
UHGV-0159798_7	Pfam	PF05352	Phage Connector (GP10)	Phage_connector
UHGV-0159798_7	Structural annotation	PF05352, TIGR01538, COG4695	NA	NA
UHGV-0159798_8	PHROG	phrog_2248	tail protein	tail
UHGV-0159798_8	UniRef90	UniRef90_A0A843HMI0	Caud_tail_N domain-containing protein	NA
UHGV-0159798_8	eggNOG-mapper	10756.DIT9_BPPH2	NA	NA
UHGV-0159798_8	Pfam	PF16838	Caudoviral major tail protein N-terminus	Caud_tail_N
UHGV-0159798_8	Pfam	PF20934	Bacillus phage phi29, Tail knob protein gp9, C-terminal domain	phi29_gp9_C
UHGV-0159798_8	Structural annotation	PF20934, PF16838	NA	NA
UHGV-0159798_9	PHROG	phrog_11037	NA	unknown function
UHGV-0159798_9	eggNOG-mapper	1235796.C815_01287	pathogenesis	NA
UHGV-0159798_9	Pfam	PF18013	Phage tail lysozyme	Phage_lysozyme2
UHGV-0159798_9	COG	COG3942	Surface antigen	NA
UHGV-0159798_9	Structural annotation	PF01551, NF040883, COG0739	NA	NA
UHGV-0159798_11	KOfam	K03651	cpdA; 3',5'-cyclic-AMP phosphodiesterase [EC:3.1.4.53]	NA
UHGV-0159798_11	PHROG	phrog_7158	NA	unknown function
UHGV-0159798_11	UniRef90	UniRef90_A0A7U9N3M3	3',5'-cyclic adenosine monophosphate phosphodiesterase CpdA	NA
UHGV-0159798_11	eggNOG-mapper	742735.HMPREF9467_02980	LicD family	NA
UHGV-0159798_11	Pfam	PF00149	Calcineurin-like phosphoesterase	Metallophos
UHGV-0159798_11	COG	COG3475	Phosphorylcholine metabolism protein LicD	NA
UHGV-0159798_12	PHROG	phrog_199	holin	lysis
UHGV-0159798_12	UniRef90	UniRef90_A0A843HKJ8	Phage holin family protein	NA
UHGV-0159798_12	eggNOG-mapper	1235794.C811_00437	Bacteriophage holin family	NA
UHGV-0159798_12	Pfam	PF05105	Bacteriophage holin family	Phage_holin_4_1
UHGV-0159798_12	Structural annotation	PF05105, TIGR01593, COG4824	NA	NA
UHGV-0159798_13	PHROG	phrog_2006	major head protein	head and packaging
UHGV-0159798_13	UniRef90	UniRef90_Q37888	Major capsid protein	NA
UHGV-0159798_13	eggNOG-mapper	10753.B7SSM8_BPNF	viral capsid	NA
UHGV-0159798_13	Structural annotation	PF19821, PF18957, MF_04119, TIGR04387, NF038186, COG4834	NA	NA
UHGV-0159798_14	Pfam	PF11418	Phi29 scaffolding protein	Scaffolding_pro
UHGV-0159798_17	KOfam	K21237	gp2; Podoviridae DNA polymerase [EC:2.7.7.7]	NA
UHGV-0159798_17	PHROG	phrog_1907	DNA polymerase	DNA, RNA and nucleotide metabolism
UHGV-0159798_17	eggNOG-mapper	10753.DPOL_BPNF	nucleotide binding	NA
UHGV-0159798_17	Pfam	PF03175	DNA polymerase type B, organellar and viral	DNA_pol_B_2
UHGV-0159798_18	KOfam	K21237	gp2; Podoviridae DNA polymerase [EC:2.7.7.7]	NA
UHGV-0159798_18	PHROG	phrog_1907	DNA polymerase	DNA, RNA and nucleotide metabolism
UHGV-0159798_18	UniRef90	UniRef90_B7SSM2	DNA polymerase	NA
UHGV-0159798_18	eggNOG-mapper	10753.DPOL_BPNF	nucleotide binding	NA
UHGV-0159798_18	Pfam	PF03175	DNA polymerase type B, organellar and viral	DNA_pol_B_2
UHGV-0159798_18	Structural annotation	PF03175, MF_04055, NF004415, COG0417	NA	NA
UHGV-0159798_19	PHROG	phrog_6358	DNA terminal protein	DNA, RNA and nucleotide metabolism
UHGV-0159798_19	Structural annotation	PF05435	NA	NA
UHGV-0159798_20	PHROG	phrog_6243	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0159798_20	Pfam	PF17427	Phage Single-stranded DNA-binding protein	Phi29_Phage_SSB
UHGV-0159798_20	Structural annotation	PF17427	NA	NA