UHGV-0159924

Genome information

Genome length 27,793 bps

CDS count 47

Completeness 95.95% (high-quality)

geNomad score 0.9688

Prediction confidence Confident

Genome information
Genome ID	UHGV-0159924
vOTU ID	vOTU-067580
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_495233
BioSample	SAMN06110212
Country	Netherlands
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	95.95% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	Yes
CheckV viral markers	20
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9688
Virus hallmark genes (geNomad)	8
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	48.03
Jumbo phage	No

Genome content
Genome length	27,793 bps
GC content	40.11%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	47
CDS density	93.89%
Average CDS length	560.36 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0159924_1	PHROG	phrog_13260	NA	unknown function
UHGV-0159924_1	UniRef90	UniRef90_A0A3R5TCR3	FunZ	NA
UHGV-0159924_1	eggNOG-mapper	572479.Hprae_1054	NA	NA
UHGV-0159924_2	KOfam	K01448	amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0159924_2	PHROG	phrog_1794	amidase	lysis
UHGV-0159924_2	UniRef90	UniRef90_A0A373KFY8	SH3b domain-containing protein	NA
UHGV-0159924_2	eggNOG-mapper	1226322.HMPREF1545_03576	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0159924_2	Pfam	PF01520	N-acetylmuramoyl-L-alanine amidase	Amidase_3
UHGV-0159924_2	COG	COG0860	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0159924_2	Structural annotation	PF01520, PF01471, MF_00562, TIGR02883, TIGR03979, COG0860, COG3409	NA	NA
UHGV-0159924_3	PHROG	phrog_18591	NA	unknown function
UHGV-0159924_3	eggNOG-mapper	1230343.CANP01000040_gene3044	NA	NA
UHGV-0159924_4	PHROG	phrog_443	holin	lysis
UHGV-0159924_4	UniRef90	UniRef90_R6R2Q3	Conserved domain protein	NA
UHGV-0159924_4	eggNOG-mapper	1298920.KI911353_gene2669	Putative lactococcus lactis phage r1t holin	NA
UHGV-0159924_4	Pfam	PF16945	Putative lactococcus lactis phage r1t holin	Phage_r1t_holin
UHGV-0159924_4	Structural annotation	PF16945	NA	NA
UHGV-0159924_5	PHROG	phrog_1863	NA	unknown function
UHGV-0159924_5	UniRef90	UniRef90_UPI001F223E8B	hemolysin XhlA family protein	NA
UHGV-0159924_5	eggNOG-mapper	1226322.HMPREF1545_04027	NA	NA
UHGV-0159924_7	UniRef90	UniRef90_A0A374N9Y2	NA	NA
UHGV-0159924_7	Pfam	PF10651	BppU N-terminal domain	BppU_N
UHGV-0159924_7	Structural annotation	PF10651, PF08931, TIGR02268	NA	NA
UHGV-0159924_8	PHROG	phrog_1067	minor head protein	head and packaging
UHGV-0159924_8	UniRef90	UniRef90_A0A348ZBV6	Prophage_tail domain-containing protein	NA
UHGV-0159924_8	eggNOG-mapper	1160721.RBI_I01574	Prophage endopeptidase tail	NA
UHGV-0159924_8	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-0159924_8	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-0159924_8	COG	COG4926	Phage-related protein	NA
UHGV-0159924_8	Structural annotation	PF14594, TIGR01665, COG4926	NA	NA
UHGV-0159924_9	UniRef90	UniRef90_A0A1G5CPA2	Phage-related protein	NA
UHGV-0159924_9	eggNOG-mapper	1246.JMEA01000006_gene51	phage tail	NA
UHGV-0159924_9	COG	COG4722	Phage-related protein YomH	NA
UHGV-0159924_9	Structural annotation	PF20195, TIGR01633, COG4722	NA	NA
UHGV-0159924_10	PHROG	phrog_23464	NA	unknown function
UHGV-0159924_10	UniRef90	UniRef90_A0A1C6JGQ9	Phage-related minor tail protein	NA
UHGV-0159924_10	eggNOG-mapper	665950.HMPREF1025_02660	phage tail tape measure protein	NA
UHGV-0159924_10	COG	COG5283	Phage-related tail protein	NA
UHGV-0159924_10	Structural annotation	COG3941	NA	NA
UHGV-0159924_12	PHROG	phrog_1021	NA	unknown function
UHGV-0159924_12	eggNOG-mapper	1321778.HMPREF1982_03556	NA	NA
UHGV-0159924_13	PHROG	phrog_885	major tail protein	tail
UHGV-0159924_13	UniRef90	UniRef90_A0A101Y2E4	Big_5 domain-containing protein	NA
UHGV-0159924_13	eggNOG-mapper	1321814.HMPREF9089_00935	NA	NA
UHGV-0159924_13	Structural annotation	PF06488, TIGR01603, COG5437	NA	NA
UHGV-0159924_14	Structural annotation	PF12691	NA	NA
UHGV-0159924_15	UniRef90	UniRef90_UPI001A9B6FBF	HK97 gp10 family phage protein	NA
UHGV-0159924_15	eggNOG-mapper	1414720.CBYM010000040_gene1650	NA	NA
UHGV-0159924_15	Structural annotation	TIGR01725	NA	NA
UHGV-0159924_16	PHROG	phrog_1951	head-tail adaptor	connector
UHGV-0159924_16	UniRef90	UniRef90_A0A374MZF9	Phage head-tail adapter protein	NA
UHGV-0159924_16	eggNOG-mapper	1414720.CBYM010000040_gene1649	head-tail adaptor	NA
UHGV-0159924_16	COG	COG5614	Phage head-tail adaptor	NA
UHGV-0159924_16	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0159924_17	PHROG	phrog_5223	neck protein	connector
UHGV-0159924_17	eggNOG-mapper	931626.Awo_c31020	NA	NA
UHGV-0159924_17	NCBIFam	TIGR01560.2	head-tail connector protein	NA
UHGV-0159924_17	Structural annotation	TIGR01560	NA	NA
UHGV-0159924_18	PHROG	phrog_10	major head protein	head and packaging
UHGV-0159924_18	UniRef90	UniRef90_A0A374N9V9	Phage major capsid protein	NA
UHGV-0159924_18	eggNOG-mapper	1280689.AUJC01000011_gene1521	Phage major capsid protein, HK97 family	NA
UHGV-0159924_18	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0159924_18	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0159924_18	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0159924_18	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0159924_19	KOfam	K01358	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	NA
UHGV-0159924_19	PHROG	phrog_94	head maturation protease	head and packaging
UHGV-0159924_19	UniRef90	UniRef90_A0A374NBM3	ATP-dependent Clp protease proteolytic subunit	NA
UHGV-0159924_19	eggNOG-mapper	1203606.HMPREF1526_00979	Belongs to the peptidase S14 family	NA
UHGV-0159924_19	Pfam	PF00574	Clp protease	CLP_protease
UHGV-0159924_19	COG	COG0740	ATP-dependent protease ClpP, protease subunit	NA
UHGV-0159924_19	Structural annotation	PF00574, MF_00444, NF011090, COG0740	NA	NA
UHGV-0159924_20	PHROG	phrog_12	portal protein	head and packaging
UHGV-0159924_20	UniRef90	UniRef90_A0A374NAE1	Phage portal protein	NA
UHGV-0159924_20	eggNOG-mapper	626523.GCWU000342_01027	Portal protein	NA
UHGV-0159924_20	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0159924_20	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0159924_20	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-0159924_21	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0159924_21	UniRef90	UniRef90_A0A374NB45	Terminase large subunit	NA
UHGV-0159924_21	eggNOG-mapper	1235793.C809_01917	Phage Terminase	NA
UHGV-0159924_21	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0159924_21	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0159924_21	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0159924_21	Structural annotation	PF20441, PF03354, MF_04145, TIGR01547, COG4626	NA	NA
UHGV-0159924_22	PHROG	phrog_1066	NA	unknown function
UHGV-0159924_22	UniRef90	UniRef90_A0A0D0SQQ8	NA	NA
UHGV-0159924_22	eggNOG-mapper	1203606.HMPREF1526_00982	NA	NA
UHGV-0159924_23	PHROG	phrog_119	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0159924_23	UniRef90	UniRef90_A0A374N9T6	HNH endonuclease	NA
UHGV-0159924_23	eggNOG-mapper	1235793.C809_01915	HNH endonuclease	NA
UHGV-0159924_23	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0159924_24	UniRef90	UniRef90_A0A374MXG7	XRE family transcriptional regulator	NA
UHGV-0159924_24	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0159924_24	COG	COG3093	Plasmid maintenance system antidote protein VapI, contains XRE-type HTH domain	NA
UHGV-0159924_26	PHROG	phrog_8684	NA	unknown function
UHGV-0159924_26	UniRef90	UniRef90_A0A374DV44	YopX domain-containing protein	NA
UHGV-0159924_26	eggNOG-mapper	742767.HMPREF9456_02048	YopX protein	NA
UHGV-0159924_26	Pfam	PF09643	YopX protein	YopX
UHGV-0159924_26	NCBIFam	TIGR01671.1	phage conserved hypothetical protein TIGR01671	NA
UHGV-0159924_26	Structural annotation	PF09643, TIGR01671	NA	NA
UHGV-0159924_28	PHROG	phrog_824	NA	unknown function
UHGV-0159924_28	UniRef90	UniRef90_A0A374MXE9	VRR-NUC domain-containing protein	NA
UHGV-0159924_28	eggNOG-mapper	1235792.C808_00622	VRR_NUC	NA
UHGV-0159924_28	Pfam	PF08774	VRR-NUC domain	VRR_NUC
UHGV-0159924_28	Structural annotation	PF08774	NA	NA
UHGV-0159924_29	KOfam	K02315	dnaC; DNA replication protein DnaC	NA
UHGV-0159924_29	PHROG	phrog_50	DnaC-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0159924_29	UniRef90	UniRef90_A0A374MYR7	IstB_IS21 domain-containing protein	NA
UHGV-0159924_29	eggNOG-mapper	1507.HMPREF0262_00302	Bacterial dnaA protein	NA
UHGV-0159924_29	Pfam	PF01695	IstB-like ATP binding protein	IstB_IS21
UHGV-0159924_29	COG	COG1484	DNA replication protein DnaC	NA
UHGV-0159924_29	Structural annotation	PF01695, MF_01158, NF005378, COG1484	NA	NA
UHGV-0159924_30	PHROG	phrog_2562	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0159924_30	UniRef90	UniRef90_A0A374NA85	NA	NA
UHGV-0159924_30	eggNOG-mapper	1235790.C805_00030	NA	NA
UHGV-0159924_30	Pfam	PF14297	Lin1244/Lin1753-like, N-terminal	Lin1244_N
UHGV-0159924_30	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0159924_30	Structural annotation	PF14297	NA	NA
UHGV-0159924_31	PHROG	phrog_398	NA	unknown function
UHGV-0159924_31	UniRef90	UniRef90_UPI000C7B20DA	putative HNHc nuclease	NA
UHGV-0159924_31	eggNOG-mapper	293826.Amet_2584	Putative HNHc nuclease	NA
UHGV-0159924_31	Pfam	PF16784	Putative HNHc nuclease	HNHc_6
UHGV-0159924_31	Structural annotation	PF16784	NA	NA
UHGV-0159924_32	KOfam	K06167	phnP; phosphoribosyl 1,2-cyclic phosphate phosphodiesterase [EC:3.1.4.55]	NA
UHGV-0159924_32	PHROG	phrog_392	metal-dependent hydrolase	other
UHGV-0159924_32	UniRef90	UniRef90_A0A373XYI8	MBL fold metallo-hydrolase	NA
UHGV-0159924_32	eggNOG-mapper	665956.HMPREF1032_03101	May be involved in the transport of PQQ or its precursor to the periplasm	NA
UHGV-0159924_32	Pfam	PF12706	Beta-lactamase superfamily domain	Lactamase_B_2
UHGV-0159924_32	COG	COG1235	Phosphoribosyl 1,2-cyclic phosphate phosphodiesterase	NA
UHGV-0159924_32	Structural annotation	PF12706, MF_01818, TIGR03307, COG1234	NA	NA
UHGV-0159924_33	KOfam	K07455	recT; recombination protein RecT	NA
UHGV-0159924_33	PHROG	phrog_148	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0159924_33	UniRef90	UniRef90_A0A374N9W0	Recombinase	NA
UHGV-0159924_33	eggNOG-mapper	428127.EUBDOL_01509	RecT family	NA
UHGV-0159924_33	Pfam	PF03837	RecT family	RecT
UHGV-0159924_33	NCBIFam	TIGR00616.1	recombinase, phage RecT family	NA
UHGV-0159924_33	COG	COG3723	Recombinational DNA repair protein RecT	NA
UHGV-0159924_33	Structural annotation	PF03837, TIGR00616, COG3723	NA	NA
UHGV-0159924_34	PHROG	phrog_674	NA	unknown function
UHGV-0159924_34	UniRef90	UniRef90_A0A374N9T8	NA	NA
UHGV-0159924_34	eggNOG-mapper	1408437.JNJN01000039_gene373	NA	NA
UHGV-0159924_34	Pfam	PF07083	NA	DUF1351
UHGV-0159924_34	Structural annotation	PF07083	NA	NA
UHGV-0159924_35	Structural annotation	PF04570, COG2075	NA	NA
UHGV-0159924_38	UniRef90	UniRef90_A0A2N0ULT9	DNA binding domain, excisionase family	NA
UHGV-0159924_38	eggNOG-mapper	1094556.MCY_01115	DNA binding domain, excisionase family	NA
UHGV-0159924_38	Pfam	PF12728	Helix-turn-helix domain	HTH_17
UHGV-0159924_38	NCBIFam	TIGR01764.1	excisionase family DNA-binding protein	NA
UHGV-0159924_38	COG	COG3311	DNA-binding transcriptional regulator AlpA	NA
UHGV-0159924_38	Structural annotation	PF12728, NF040990, COG3311	NA	NA
UHGV-0159924_40	KOfam	K15773	hipB; HTH-type transcriptional regulator / antitoxin HipB	NA
UHGV-0159924_40	PHROG	phrog_3	transcriptional repressor	transcription regulation
UHGV-0159924_40	UniRef90	UniRef90_A0A374N3U7	XRE family transcriptional regulator	NA
UHGV-0159924_40	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0159924_40	COG	COG1974	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	NA
UHGV-0159924_40	Structural annotation	PF01381, NF041951, COG1396	NA	NA
UHGV-0159924_44	UniRef90	UniRef90_UPI001897B0FF	helix-turn-helix transcriptional regulator	NA
UHGV-0159924_44	eggNOG-mapper	1121289.JHVL01000079_gene1187	Helix-turn-helix XRE-family like proteins	NA
UHGV-0159924_44	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0159924_44	Structural annotation	PF12844, NF041951, COG1396	NA	NA
UHGV-0159924_45	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0159924_45	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0159924_45	UniRef90	UniRef90_UPI0015F3DE1D	helix-turn-helix domain-containing protein	NA
UHGV-0159924_45	eggNOG-mapper	272562.CA_C1559	sequence-specific DNA binding	NA
UHGV-0159924_45	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0159924_45	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-0159924_45	Structural annotation	PF05339, NF007257, COG3655	NA	NA
UHGV-0159924_46	PHROG	phrog_1914	NA	unknown function
UHGV-0159924_46	UniRef90	UniRef90_A0A373XNL4	ImmA/IrrE family metallo-endopeptidase	NA
UHGV-0159924_46	eggNOG-mapper	1160721.RBI_I01604	NA	NA
UHGV-0159924_46	Pfam	PF06114	IrrE N-terminal-like domain	Peptidase_M78
UHGV-0159924_46	COG	COG2856	Zn-dependent peptidase ImmA, M78 family	NA
UHGV-0159924_46	Structural annotation	PF06114, COG2856	NA	NA
UHGV-0159924_47	UniRef90	UniRef90_A0A374DTF3	NA	NA