UHGV-0159926

Genome information

vOTU vOTU-019608

Genome length 29,774 bps

CDS count 60

Completeness 74.05% (medium-quality)

geNomad score 0.9818

Prediction confidence Confident

Genome information
Genome ID	UHGV-0159926
vOTU ID	vOTU-019608
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_495227
BioSample	SAMN06110442
Country	Netherlands
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	74.05% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	13
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9818
Virus hallmark genes (geNomad)	7
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	27.16
Jumbo phage	No

Genome content
Genome length	29,774 bps
GC content	53.74%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	60
CDS density	89.17%
Average CDS length	447.00 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0159926_1	PHROG	phrog_16490	NA	unknown function
UHGV-0159926_1	eggNOG-mapper	1408437.JNJN01000043_gene803	NA	NA
UHGV-0159926_2	PHROG	phrog_20016	NA	unknown function
UHGV-0159926_2	UniRef90	UniRef90_A0A2Z4QB67	Carbohydrate binding domain/collagen triple helix repeat protein	NA
UHGV-0159926_2	eggNOG-mapper	1226322.HMPREF1545_00077	NA	NA
UHGV-0159926_2	Structural annotation	PF18573, NF033147	NA	NA
UHGV-0159926_3	Structural annotation	PF12510	NA	NA
UHGV-0159926_4	eggNOG-mapper	1232443.BAIA02000078_gene6	NA	NA
UHGV-0159926_5	KOfam	K06400	spoIVCA; site-specific DNA recombinase	NA
UHGV-0159926_5	PHROG	phrog_95	integrase	integration and excision
UHGV-0159926_5	UniRef90	UniRef90_A0A3A9I9T1	Recombinase family protein	NA
UHGV-0159926_5	eggNOG-mapper	357809.Cphy_2997	COG COG1961 Site-specific recombinases, DNA invertase Pin homologs	NA
UHGV-0159926_5	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-0159926_5	Pfam	PF13408	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
UHGV-0159926_5	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-0159926_5	Structural annotation	PF00239, NF041201, COG1961	NA	NA
UHGV-0159926_6	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0159926_6	Structural annotation	PF01381, MF_02017, TIGR03070, COG3655	NA	NA
UHGV-0159926_7	PHROG	phrog_301	secreted protein	other
UHGV-0159926_7	eggNOG-mapper	1262449.CP6013_2082	NA	NA
UHGV-0159926_7	Structural annotation	PF11631, TIGR03066	NA	NA
UHGV-0159926_10	PHROG	phrog_585	NA	unknown function
UHGV-0159926_10	UniRef90	UniRef90_UPI0008A69A23	NA	NA
UHGV-0159926_10	eggNOG-mapper	1280692.AUJL01000009_gene2980	NA	NA
UHGV-0159926_10	Pfam	PF10711	NA	DUF2513
UHGV-0159926_10	Structural annotation	PF10711, TIGR04176, COG1695	NA	NA
UHGV-0159926_11	Structural annotation	NF007257, COG1396	NA	NA
UHGV-0159926_12	UniRef90	UniRef90_A0A3D3Y6C1	XRE family transcriptional regulator	NA
UHGV-0159926_12	eggNOG-mapper	1235792.C808_00652	FliG C-terminal domain	NA
UHGV-0159926_12	Pfam	PF13560	Helix-turn-helix domain	HTH_31
UHGV-0159926_12	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-0159926_12	Structural annotation	PF01381, NF041951, COG1476	NA	NA
UHGV-0159926_13	eggNOG-mapper	760568.Desku_0919	NA	NA
UHGV-0159926_13	Structural annotation	PF03787, TIGR02581, COG1604	NA	NA
UHGV-0159926_18	Structural annotation	PF14354, TIGR03655	NA	NA
UHGV-0159926_20	PHROG	phrog_4973	NA	unknown function
UHGV-0159926_20	UniRef90	UniRef90_A0A3D3Y5F2	DNA-binding protein	NA
UHGV-0159926_20	eggNOG-mapper	935261.JAGL01000009_gene1175	Helix-turn-helix domain	NA
UHGV-0159926_20	Pfam	PF14090	Helix-turn-helix domain	HTH_39
UHGV-0159926_20	Structural annotation	PF14090, NF040939, COG4738	NA	NA
UHGV-0159926_21	PHROG	phrog_253	Mu Gam-like end protection	DNA, RNA and nucleotide metabolism
UHGV-0159926_21	UniRef90	UniRef90_A0A1C5N4H2	Siphovirus Gp157	NA
UHGV-0159926_21	eggNOG-mapper	1410670.JHXF01000015_gene2268	Siphovirus Gp157	NA
UHGV-0159926_21	Pfam	PF05565	Siphovirus Gp157	Sipho_Gp157
UHGV-0159926_21	Structural annotation	PF05565	NA	NA
UHGV-0159926_22	PHROG	phrog_155	Erf-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0159926_22	UniRef90	UniRef90_A0A3D1PJF8	Single-stranded DNA-binding protein	NA
UHGV-0159926_22	eggNOG-mapper	1304866.K413DRAFT_1196	ERF superfamily	NA
UHGV-0159926_22	Pfam	PF04404	ERF superfamily	ERF
UHGV-0159926_22	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0159926_22	Structural annotation	PF04404, COG4712	NA	NA
UHGV-0159926_23	PHROG	phrog_72	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
UHGV-0159926_23	UniRef90	UniRef90_A0A8D9PDS2	NinB protein	NA
UHGV-0159926_23	eggNOG-mapper	445972.ANACOL_01825	NA	NA
UHGV-0159926_23	Structural annotation	PF05772	NA	NA
UHGV-0159926_24	PHROG	phrog_7370	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0159926_24	UniRef90	UniRef90_UPI001C122365	HNH endonuclease	NA
UHGV-0159926_24	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0159926_25	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0159926_25	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0159926_25	UniRef90	UniRef90_UPI0002EC42B8	single-stranded DNA-binding protein	NA
UHGV-0159926_25	eggNOG-mapper	1007096.BAGW01000023_gene151	Single-strand binding protein family	NA
UHGV-0159926_25	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0159926_25	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0159926_25	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0159926_25	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0159926_25	Structural annotation	PF00436, MF_00984, NF005241, COG0629	NA	NA
UHGV-0159926_26	PHROG	phrog_2149	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0159926_26	UniRef90	UniRef90_A0A417QFV0	Transcriptional regulator	NA
UHGV-0159926_26	eggNOG-mapper	742740.HMPREF9474_03117	NA	NA
UHGV-0159926_26	Structural annotation	PF01978, NF000243, COG0735	NA	NA
UHGV-0159926_28	Structural annotation	PF21485	NA	NA
UHGV-0159926_30	KOfam	K01160	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	NA
UHGV-0159926_30	PHROG	phrog_4632	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0159926_30	UniRef90	UniRef90_A0A7X8IB41	RusA family crossover junction endodeoxyribonuclease	NA
UHGV-0159926_30	eggNOG-mapper	469604.HMPREF0946_00819	NA	NA
UHGV-0159926_30	Structural annotation	PF19595, NF007305, COG4570	NA	NA
UHGV-0159926_32	KOfam	K17398	DNMT3A; DNA (cytosine-5)-methyltransferase 3A [EC:2.1.1.37]	NA
UHGV-0159926_32	PHROG	phrog_116	DNA methyltransferase	other
UHGV-0159926_32	UniRef90	UniRef90_A0A1Q6RQI3	DNA (cytosine-5-)-methyltransferase	NA
UHGV-0159926_32	eggNOG-mapper	1235797.C816_01614	Belongs to the class I-like SAM-binding methyltransferase superfamily. C5-methyltransferase family	NA
UHGV-0159926_32	Pfam	PF00145	C-5 cytosine-specific DNA methylase	DNA_methylase
UHGV-0159926_32	COG	COG0270	DNA-cytosine methylase	NA
UHGV-0159926_32	Structural annotation	PF00145, TIGR00675, COG0270	NA	NA
UHGV-0159926_33	KOfam	K00390	cysH; phosphoadenosine phosphosulfate reductase [EC:1.8.4.8 1.8.4.10]	NA
UHGV-0159926_33	PHROG	phrog_424	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
UHGV-0159926_33	UniRef90	UniRef90_UPI001D087498	phosphoadenosine phosphosulfate reductase family protein	NA
UHGV-0159926_33	eggNOG-mapper	1408437.JNJN01000032_gene2312	Phosphoadenosine phosphosulfate reductase	NA
UHGV-0159926_33	Pfam	PF01507	Phosphoadenosine phosphosulfate reductase family	PAPS_reduct
UHGV-0159926_33	COG	COG0175	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	NA
UHGV-0159926_33	Structural annotation	PF01507, MF_00063, NF010369, COG0175	NA	NA
UHGV-0159926_35	UniRef90	UniRef90_A0A2V2EEG3	NA	NA
UHGV-0159926_35	Pfam	PF04448	NA	DUF551
UHGV-0159926_36	dbAPIS	APIS033	Lar is functionally similar to RaI, is able to alleviate restriction and enhance modification by EcoKI. And the nucleotide sequences of their genes share 47% identity, indicating a common origin.	NA
UHGV-0159926_36	Structural annotation	PF13211	NA	NA
UHGV-0159926_37	PHROG	phrog_22543	NA	unknown function
UHGV-0159926_37	UniRef90	UniRef90_A0A8D9PDT5	Hydrogenase/urease nickel incorporation protein	NA
UHGV-0159926_40	KOfam	K02647	cdaR; carbohydrate diacid regulator	NA
UHGV-0159926_40	UniRef90	UniRef90_UPI00164DE10C	helix-turn-helix domain-containing protein	NA
UHGV-0159926_40	eggNOG-mapper	1301100.HG529387_gene5110	Putative sugar diacid recognition	NA
UHGV-0159926_40	Pfam	PF13556	PucR C-terminal helix-turn-helix domain	HTH_30
UHGV-0159926_40	COG	COG3835	Sugar diacid utilization regulator CdaR	NA
UHGV-0159926_40	Structural annotation	PF13556, TIGR00637, COG2771	NA	NA
UHGV-0159926_41	Structural annotation	PF06003, MF_01354, TIGR00739, COG5475	NA	NA
UHGV-0159926_42	KOfam	K22299	rghR; HTH-type transcriptional regulator, competence development regulator	NA
UHGV-0159926_42	UniRef90	UniRef90_A0A1C6J963	Helix-turn-helix	NA
UHGV-0159926_42	eggNOG-mapper	1226322.HMPREF1545_00039	sequence-specific DNA binding	NA
UHGV-0159926_42	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0159926_42	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0159926_43	KOfam	K07319	yhdJ; adenine-specific DNA-methyltransferase [EC:2.1.1.72]	NA
UHGV-0159926_43	PHROG	phrog_498	DNA methyltransferase	other
UHGV-0159926_43	UniRef90	UniRef90_A0A810Q3Z7	N6_N4_Mtase domain-containing protein	NA
UHGV-0159926_43	eggNOG-mapper	1423758.BN55_01455	DNA methylase	NA
UHGV-0159926_43	PADLOC	MTase_II_00015	Type II methyltransferase	RM
UHGV-0159926_43	Pfam	PF02195	ParB/Sulfiredoxin domain	ParBc
UHGV-0159926_43	Pfam	PF01555	DNA methylase	N6_N4_Mtase
UHGV-0159926_43	COG	COG0863	DNA modification methylase	NA
UHGV-0159926_43	Structural annotation	PF01555, PF02195, MF_02015, MF_01872, NF010253, TIGR04285, COG0863, COG1475	NA	NA
UHGV-0159926_45	PHROG	phrog_38	terminase large subunit	head and packaging
UHGV-0159926_45	UniRef90	UniRef90_UPI00166CA12B	terminase family protein	NA
UHGV-0159926_45	eggNOG-mapper	1140001.I571_01829	NA	NA
UHGV-0159926_45	Structural annotation	PF17289, PF05876, MF_04147, NF033889, COG5323	NA	NA
UHGV-0159926_46	PHROG	phrog_64	portal protein	head and packaging
UHGV-0159926_46	UniRef90	UniRef90_UPI0018A8A301	phage portal protein	NA
UHGV-0159926_46	eggNOG-mapper	1235800.C819_02239	phage portal protein, SPP1	NA
UHGV-0159926_46	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0159926_46	Structural annotation	PF05133, MF_04120, TIGR01538, COG3567	NA	NA
UHGV-0159926_47	PHROG	phrog_115	minor head protein	head and packaging
UHGV-0159926_47	UniRef90	UniRef90_A0A810PSD3	Phage_Mu_F domain-containing protein	NA
UHGV-0159926_47	eggNOG-mapper	1111121.HMPREF1247_0797	cell adhesion	NA
UHGV-0159926_47	Pfam	PF04233	Phage Mu protein F like protein	Phage_Mu_F
UHGV-0159926_47	NCBIFam	TIGR01641.1	minor capsid protein	NA
UHGV-0159926_47	COG	COG2369	NA	NA
UHGV-0159926_47	Structural annotation	PF04233, PF21814, TIGR01641, COG2369	NA	NA
UHGV-0159926_48	Structural annotation	PF06442, MF_01194, NF000331, COG4014	NA	NA
UHGV-0159926_49	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0159926_49	UniRef90	UniRef90_A0A4D7AJK9	HK97 gp10 family phage protein	NA
UHGV-0159926_49	eggNOG-mapper	386415.NT01CX_2170	NA	NA
UHGV-0159926_49	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-0159926_49	NCBIFam	TIGR01725.1	HK97-gp10 family putative phage morphogenesis protein	NA
UHGV-0159926_49	Structural annotation	PF20039, TIGR01725, COG5005	NA	NA
UHGV-0159926_50	Structural annotation	PF18152	NA	NA
UHGV-0159926_51	PHROG	phrog_1233	NA	unknown function
UHGV-0159926_51	UniRef90	UniRef90_UPI001C39EFB9	Dienelactone hydrolase family protein	NA
UHGV-0159926_51	eggNOG-mapper	357809.Cphy_2967	NA	NA
UHGV-0159926_52	UniRef90	UniRef90_A0A6B9SU02	Fibronectin autolysin	NA
UHGV-0159926_52	Structural annotation	PF06810	NA	NA
UHGV-0159926_53	PHROG	phrog_544	major head protein	head and packaging
UHGV-0159926_53	UniRef90	UniRef90_A0A1C6B5R0	S-l_SbsC_C domain-containing protein	NA
UHGV-0159926_53	eggNOG-mapper	476272.RUMHYD_01776	NA	NA
UHGV-0159926_53	Structural annotation	PF03864, MF_04119, TIGR04387, COG4834	NA	NA
UHGV-0159926_55	PHROG	phrog_17977	NA	unknown function
UHGV-0159926_55	UniRef90	UniRef90_A0A285PT57	Phage head-tail joining protein	NA
UHGV-0159926_55	Structural annotation	PF07405, TIGR01563, COG5614	NA	NA
UHGV-0159926_56	PHROG	phrog_17405	head protein	head and packaging
UHGV-0159926_56	Structural annotation	PF11367	NA	NA
UHGV-0159926_57	PHROG	phrog_885	major tail protein	tail
UHGV-0159926_57	UniRef90	UniRef90_A0A843J9F0	Ig-like domain-containing protein	NA
UHGV-0159926_57	eggNOG-mapper	1504822.CCNO01000012_gene492	NA	NA
UHGV-0159926_57	Structural annotation	PF06488, TIGR01603, COG5437	NA	NA
UHGV-0159926_58	UniRef90	UniRef90_A0A285PXU7	Consensus disorder prediction	NA
UHGV-0159926_60	PHROG	phrog_7115	NA	unknown function
UHGV-0159926_60	UniRef90	UniRef90_A0A810PSE6	bPH_1 domain-containing protein	NA
UHGV-0159926_60	eggNOG-mapper	1514668.JOOA01000002_gene2950	Bacterial PH domain	NA
UHGV-0159926_60	Pfam	PF08000	Bacterial PH domain	bPH_1
UHGV-0159926_60	Structural annotation	PF08000, MF_00437	NA	NA