UHGV-0159943

Genome information

Genome length 23,517 bps

CDS count 33

Completeness 58.77% (medium-quality)

geNomad score 0.9823

Prediction confidence Confident

Genome information
Genome ID	UHGV-0159943
vOTU ID	vOTU-027949
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_481859
BioSample	SAMN06115404
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	58.77% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	13
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9823
Virus hallmark genes (geNomad)	8
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	20.49
Jumbo phage	No

Genome content
Genome length	23,517 bps
GC content	49.09%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	33
CDS density	92.50%
Average CDS length	662.82 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0159943_1	PHROG	phrog_7854	endolysin	lysis
UHGV-0159943_1	UniRef90	UniRef90_A0A352P659	Cell wall-binding protein (Fragment)	NA
UHGV-0159943_1	eggNOG-mapper	1304866.K413DRAFT_1245	Putative cell wall binding repeat	NA
UHGV-0159943_1	Pfam	PF19127	Choline-binding repeat	Choline_bind_3
UHGV-0159943_1	COG	COG5263	Glucan-binding domain (YG repeat)	NA
UHGV-0159943_2	KOfam	K17733	cwlK; peptidoglycan LD-endopeptidase CwlK [EC:3.4.-.-]	NA
UHGV-0159943_2	PHROG	phrog_2649	endolysin	lysis
UHGV-0159943_2	UniRef90	UniRef90_A0A416FC87	Peptidase_M15_4 domain-containing protein	NA
UHGV-0159943_2	eggNOG-mapper	397290.C810_03258	D-alanyl-D-alanine carboxypeptidase	NA
UHGV-0159943_2	AcrCatalog	cluster_9940	NA	NA
UHGV-0159943_2	Pfam	PF13539	D-alanyl-D-alanine carboxypeptidase	Peptidase_M15_4
UHGV-0159943_2	COG	COG1876	LD-carboxypeptidase LdcB, LAS superfamily	NA
UHGV-0159943_2	Structural annotation	PF02557, MF_01924, NF007557, COG2173	NA	NA
UHGV-0159943_3	UniRef90	UniRef90_A0A416IJF5	Molybdenum cofactor biosynthesis protein MoaD	NA
UHGV-0159943_4	PHROG	phrog_1129	holin	lysis
UHGV-0159943_4	UniRef90	UniRef90_A0A3R6U6I1	Enolase	NA
UHGV-0159943_4	eggNOG-mapper	742740.HMPREF9474_03522	NA	NA
UHGV-0159943_4	Pfam	PF16079	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
UHGV-0159943_4	Structural annotation	PF06946	NA	NA
UHGV-0159943_5	PHROG	phrog_4105	NA	unknown function
UHGV-0159943_5	eggNOG-mapper	657322.FPR_27220	NA	NA
UHGV-0159943_8	eggNOG-mapper	1298920.KI911353_gene4835	NA	NA
UHGV-0159943_9	PHROG	phrog_19111	NA	unknown function
UHGV-0159943_9	UniRef90	UniRef90_A0A396Q326	Fibronectin type-III domain-containing protein	NA
UHGV-0159943_9	eggNOG-mapper	1298920.KI911353_gene4836	ATPase involved in DNA repair	NA
UHGV-0159943_9	COG	COG0419	DNA repair exonuclease SbcCD ATPase subunit	NA
UHGV-0159943_9	Structural annotation	PF21722, PF20942, TIGR04488, COG3401	NA	NA
UHGV-0159943_10	eggNOG-mapper	742740.HMPREF9474_03518	NA	NA
UHGV-0159943_11	PHROG	phrog_18725	NA	unknown function
UHGV-0159943_11	eggNOG-mapper	1298920.KI911353_gene4838	NA	NA
UHGV-0159943_12	PHROG	phrog_13879	NA	unknown function
UHGV-0159943_12	eggNOG-mapper	742740.HMPREF9474_03516	NA	NA
UHGV-0159943_12	Structural annotation	PF03256, PF16466, PF13550, MF_00813, NF033848, COG3500	NA	NA
UHGV-0159943_13	PHROG	phrog_1194	NA	unknown function
UHGV-0159943_13	eggNOG-mapper	742740.HMPREF9474_03515	NA	NA
UHGV-0159943_13	Structural annotation	PF20458, TIGR02126, COG3499	NA	NA
UHGV-0159943_14	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-0159943_14	UniRef90	UniRef90_A0A174WQ97	Phage-like protein	NA
UHGV-0159943_14	eggNOG-mapper	742740.HMPREF9474_03514	tape measure	NA
UHGV-0159943_14	COG	COG3941	Phage tail tape-measure protein, controls tail length	NA
UHGV-0159943_14	Structural annotation	PF20155, TIGR01760, COG3941	NA	NA
UHGV-0159943_15	PHROG	phrog_8355	NA	unknown function
UHGV-0159943_15	UniRef90	UniRef90_UPI000F52CEC4	Gp15 family bacteriophage protein	NA
UHGV-0159943_15	eggNOG-mapper	742740.HMPREF9474_03513	NA	NA
UHGV-0159943_16	PHROG	phrog_8300	NA	unknown function
UHGV-0159943_16	eggNOG-mapper	742740.HMPREF9474_03512	NA	NA
UHGV-0159943_16	Structural annotation	PF06854	NA	NA
UHGV-0159943_17	PHROG	phrog_820	major tail protein	tail
UHGV-0159943_17	eggNOG-mapper	742740.HMPREF9474_03511	domain, Protein	NA
UHGV-0159943_17	COG	COG5492	NA	NA
UHGV-0159943_17	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-0159943_18	PHROG	phrog_2595	head-tail connector protein	connector
UHGV-0159943_18	UniRef90	UniRef90_UPI001D068DAC	minor capsid protein	NA
UHGV-0159943_18	eggNOG-mapper	742740.HMPREF9474_03510	NA	NA
UHGV-0159943_18	Pfam	PF12691	Bacteriophage minor capsid protein	Minor_capsid_3
UHGV-0159943_18	Structural annotation	PF12691, COG5003	NA	NA
UHGV-0159943_19	PHROG	phrog_556	minor head protein	head and packaging
UHGV-0159943_19	eggNOG-mapper	742740.HMPREF9474_03509	NA	NA
UHGV-0159943_20	PHROG	phrog_8710	NA	unknown function
UHGV-0159943_20	eggNOG-mapper	742740.HMPREF9474_03508	NA	NA
UHGV-0159943_20	Structural annotation	PF10665, TIGR01563, COG5614	NA	NA
UHGV-0159943_21	PHROG	phrog_541	head-tail adaptor	connector
UHGV-0159943_21	eggNOG-mapper	1298920.KI911353_gene4848	NA	NA
UHGV-0159943_22	PHROG	phrog_422	major head protein	head and packaging
UHGV-0159943_22	UniRef90	UniRef90_A0A3R6QST7	Phage capsid protein	NA
UHGV-0159943_22	eggNOG-mapper	663278.Ethha_1589	NA	NA
UHGV-0159943_22	Structural annotation	PF19821, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-0159943_23	PHROG	phrog_2303	head scaffolding protein	head and packaging
UHGV-0159943_23	eggNOG-mapper	742740.HMPREF9474_03504	NA	NA
UHGV-0159943_24	PHROG	phrog_8857	NA	unknown function
UHGV-0159943_25	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0159943_25	UniRef90	UniRef90_A0A3R6LZD9	Minor capsid protein	NA
UHGV-0159943_25	eggNOG-mapper	742740.HMPREF9474_03503	Phage minor capsid protein 2	NA
UHGV-0159943_25	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0159943_25	Pfam	PF03496	ADP-ribosyltransferase exoenzyme	ADPrib_exo_Tox
UHGV-0159943_25	COG	COG2369	NA	NA
UHGV-0159943_25	Structural annotation	PF06152	NA	NA
UHGV-0159943_26	PHROG	phrog_25639	NA	unknown function
UHGV-0159943_26	eggNOG-mapper	742740.HMPREF9474_03502	NA	NA
UHGV-0159943_27	PHROG	phrog_533	portal protein	head and packaging
UHGV-0159943_27	UniRef90	UniRef90_A0A3R6U7L6	Capsid protein	NA
UHGV-0159943_27	eggNOG-mapper	742740.HMPREF9474_03501	NA	NA
UHGV-0159943_27	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-0159943_28	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0159943_28	PHROG	phrog_2	terminase large subunit	head and packaging
UHGV-0159943_28	UniRef90	UniRef90_A0A3R6QNE9	Terminase	NA
UHGV-0159943_28	eggNOG-mapper	1304866.K413DRAFT_0811	Phage terminase, large subunit, PBSX family	NA
UHGV-0159943_28	COG	COG1783	Phage terminase large subunit	NA
UHGV-0159943_28	Structural annotation	PF03237, PF17289, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-0159943_29	KOfam	K07474	xtmA; phage terminase small subunit	NA
UHGV-0159943_29	PHROG	phrog_51	terminase small subunit	head and packaging
UHGV-0159943_29	UniRef90	UniRef90_A0A3R6SWW3	Terminase small subunit	NA
UHGV-0159943_29	eggNOG-mapper	1298920.KI911353_gene4857	Terminase small subunit	NA
UHGV-0159943_29	Pfam	PF03592	Terminase small subunit	Terminase_2
UHGV-0159943_29	COG	COG3728	Phage terminase, small subunit	NA
UHGV-0159943_29	Structural annotation	PF03592, COG3728	NA	NA
UHGV-0159943_30	eggNOG-mapper	1415774.U728_3517	NA	NA
UHGV-0159943_33	PHROG	phrog_2011	anti-repressor Ant	transcription regulation
UHGV-0159943_33	UniRef90	UniRef90_A0A373CYS5	Bro-N domain-containing protein	NA
UHGV-0159943_33	eggNOG-mapper	642492.Clole_2799	Prophage antirepressor	NA
UHGV-0159943_33	Pfam	PF02498	BRO family, N-terminal domain	Bro-N
UHGV-0159943_33	COG	COG3617	Prophage antirepressor	NA
UHGV-0159943_33	Structural annotation	PF09669, TIGR02681, COG3646	NA	NA