UHGV-0159964

Genome information

Genome length 41,248 bps

CDS count 73

Completeness 100.00% (complete)

geNomad score 0.9822

Prediction confidence Confident

Genome information
Genome ID	UHGV-0159964
vOTU ID	vOTU-046282
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_488815
BioSample	SAMN06110049
Country	Netherlands
Virus prediction confidence	Confident

Quality assessment
CheckV method	ITR
CheckV completeness	100.00% (complete)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	24
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9822
Virus hallmark genes (geNomad)	9
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	54.5
Jumbo phage	No

Genome content
Genome length	41,248 bps
GC content	52.90%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	73
CDS density	93.00%
Average CDS length	529.64 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0159964_1	PHROG	phrog_15768	NA	unknown function
UHGV-0159964_1	eggNOG-mapper	642492.Clole_0798	NA	NA
UHGV-0159964_1	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0159964_2	KOfam	K02315	dnaC; DNA replication protein DnaC	NA
UHGV-0159964_2	PHROG	phrog_50	DnaC-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0159964_2	UniRef90	UniRef90_A0A174JLB0	Primosomal protein DnaI	NA
UHGV-0159964_2	eggNOG-mapper	1232447.BAHW02000027_gene2105	NA	NA
UHGV-0159964_2	Pfam	PF01695	IstB-like ATP binding protein	IstB_IS21
UHGV-0159964_2	COG	COG1484	DNA replication protein DnaC	NA
UHGV-0159964_2	Structural annotation	PF01695, MF_01919, NF005992, COG1484	NA	NA
UHGV-0159964_3	PHROG	phrog_4433	NA	unknown function
UHGV-0159964_3	eggNOG-mapper	645991.Sgly_0315	regulation of DNA-templated transcription, elongation	NA
UHGV-0159964_3	COG	COG5164	Transcription elongation factor SPT5	NA
UHGV-0159964_4	PHROG	phrog_757	DNA methyltransferase	other
UHGV-0159964_4	UniRef90	UniRef90_A0A417JTT5	DNA cytosine methyltransferase	NA
UHGV-0159964_4	eggNOG-mapper	1095750.HMPREF9970_0173	DNA (cytosine-5-)-methyltransferase activity	NA
UHGV-0159964_4	COG	COG0270	DNA-cytosine methylase	NA
UHGV-0159964_4	Structural annotation	PF00145, MF_01872, TIGR00675, COG0270	NA	NA
UHGV-0159964_5	PHROG	phrog_111	DNA methyltransferase	other
UHGV-0159964_5	UniRef90	UniRef90_A0A7X5D119	Adenine methyltransferase	NA
UHGV-0159964_5	eggNOG-mapper	411468.CLOSCI_00567	DNA N-6-adenine-methyltransferase	NA
UHGV-0159964_5	PADLOC	oMTase_00015	orphan methyltransferase	RM
UHGV-0159964_5	Pfam	PF05869	DNA N-6-adenine-methyltransferase (Dam)	Dam
UHGV-0159964_5	NCBIFam	TIGR01712.1	phage N-6-adenine-methyltransferase	NA
UHGV-0159964_5	Structural annotation	PF05869, MF_03187, TIGR01712, COG2263	NA	NA
UHGV-0159964_6	PHROG	phrog_1770	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0159964_6	UniRef90	UniRef90_A0A533R9G2	Holliday junction endonuclease	NA
UHGV-0159964_6	eggNOG-mapper	329726.AM1_4255	Nuclease that resolves Holliday junction intermediates in genetic recombination. Cleaves the cruciform structure in supercoiled DNA by nicking to strands with the same polarity at sites symmetrically opposed at the junction in the homologous arms and leaves a 5'-terminal phosphate and a 3'-terminal hydroxyl group	NA
UHGV-0159964_6	COG	COG0817	Holliday junction resolvasome RuvABC endonuclease subunit RuvC	NA
UHGV-0159964_6	Structural annotation	PF16921, MF_00034, NF000711, COG0817	NA	NA
UHGV-0159964_7	PHROG	phrog_374	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0159964_7	eggNOG-mapper	272630.MexAM1_META1p3999	NA	NA
UHGV-0159964_8	Pfam	PF14354	Restriction alleviation protein Lar	Lar_restr_allev
UHGV-0159964_8	Structural annotation	PF14354, TIGR03655	NA	NA
UHGV-0159964_9	PHROG	phrog_3392	NA	unknown function
UHGV-0159964_9	UniRef90	UniRef90_A8AT45	Gp21	NA
UHGV-0159964_9	eggNOG-mapper	1217710.F969_00044	NA	NA
UHGV-0159964_9	Pfam	PF04448	NA	DUF551
UHGV-0159964_9	Structural annotation	NF041588	NA	NA
UHGV-0159964_14	KOfam	K00390	cysH; phosphoadenosine phosphosulfate reductase [EC:1.8.4.8 1.8.4.10]	NA
UHGV-0159964_14	PHROG	phrog_424	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
UHGV-0159964_14	UniRef90	UniRef90_UPI0009E1B041	phosphoadenosine phosphosulfate reductase family protein	NA
UHGV-0159964_14	eggNOG-mapper	1408437.JNJN01000032_gene2312	Phosphoadenosine phosphosulfate reductase	NA
UHGV-0159964_14	PADLOC	BrxP_00001	BrxP	BREX
UHGV-0159964_14	Pfam	PF01507	Phosphoadenosine phosphosulfate reductase family	PAPS_reduct
UHGV-0159964_14	COG	COG0175	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	NA
UHGV-0159964_14	Structural annotation	PF01507, MF_00063, NF010369, COG0175	NA	NA
UHGV-0159964_17	PHROG	phrog_3136	NA	unknown function
UHGV-0159964_17	UniRef90	UniRef90_UPI001CBCD733	ASCH domain-containing protein	NA
UHGV-0159964_17	eggNOG-mapper	97139.C824_00742	The globular domain of the protein is located near the polypeptide exit tunnel on the outside of the subunit, while an extended beta-hairpin is found that lines the wall of the exit tunnel in the center of the 70S ribosome	NA
UHGV-0159964_17	COG	COG4933	Predicted transcriptional regulator, contains an HTH and PUA-like domains	NA
UHGV-0159964_17	Structural annotation	PF04266, MF_00684, NF003443, COG4933	NA	NA
UHGV-0159964_19	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0159964_19	UniRef90	UniRef90_UPI001C10AB33	NA	NA
UHGV-0159964_19	eggNOG-mapper	428125.CLOLEP_01806	NA	NA
UHGV-0159964_19	Structural annotation	PF07374, TIGR01636	NA	NA
UHGV-0159964_20	PHROG	phrog_940	nuclease	DNA, RNA and nucleotide metabolism
UHGV-0159964_20	UniRef90	UniRef90_R5YPA6	ParB-like protein	NA
UHGV-0159964_20	eggNOG-mapper	1123302.KB904167_gene511	NA	NA
UHGV-0159964_20	PADLOC	MTase_II_00015	Type II methyltransferase	RM
UHGV-0159964_20	Pfam	PF02195	ParB/Sulfiredoxin domain	ParBc
UHGV-0159964_20	Pfam	PF14386	NA	DUF4417
UHGV-0159964_20	COG	COG1475	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	NA
UHGV-0159964_20	Structural annotation	PF14386, PF02195, TIGR00180	NA	NA
UHGV-0159964_23	PHROG	phrog_9479	NA	unknown function
UHGV-0159964_23	Structural annotation	PF15529	NA	NA
UHGV-0159964_24	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0159964_24	PHROG	phrog_3717	terminase large subunit	head and packaging
UHGV-0159964_24	UniRef90	UniRef90_A0A6L8SYJ6	PBSX family phage terminase large subunit	NA
UHGV-0159964_24	eggNOG-mapper	33035.JPJF01000106_gene3136	Terminase small subunit	NA
UHGV-0159964_24	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-0159964_24	Pfam	PF17288	Terminase RNAseH like domain	Terminase_3C
UHGV-0159964_24	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0159964_24	COG	COG1783	Phage terminase large subunit	NA
UHGV-0159964_24	Structural annotation	PF04466, PF17288, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0159964_25	PHROG	phrog_533	portal protein	head and packaging
UHGV-0159964_25	UniRef90	UniRef90_A0A2U1BEK0	A118 family predicted phage portal protein	NA
UHGV-0159964_25	eggNOG-mapper	1226322.HMPREF1545_00044	NA	NA
UHGV-0159964_25	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0159964_25	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-0159964_26	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0159964_26	UniRef90	UniRef90_A0A2U1BEM4	Minor capsid protein 2	NA
UHGV-0159964_26	eggNOG-mapper	903814.ELI_3213	Phage minor capsid protein 2	NA
UHGV-0159964_26	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0159964_26	COG	COG2369	NA	NA
UHGV-0159964_26	Structural annotation	PF06152	NA	NA
UHGV-0159964_27	PHROG	phrog_2303	head scaffolding protein	head and packaging
UHGV-0159964_27	eggNOG-mapper	1226322.HMPREF1545_00049	NA	NA
UHGV-0159964_28	PHROG	phrog_10	major head protein	head and packaging
UHGV-0159964_28	UniRef90	UniRef90_A0A2U1BEF2	HK97 family phage major capsid protein	NA
UHGV-0159964_28	eggNOG-mapper	1226322.HMPREF1545_00050	Phage capsid family	NA
UHGV-0159964_28	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0159964_28	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0159964_28	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0159964_28	Structural annotation	PF05065, PF13620, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0159964_29	PHROG	phrog_541	head-tail adaptor	connector
UHGV-0159964_29	eggNOG-mapper	1235799.C818_04224	NA	NA
UHGV-0159964_30	PHROG	phrog_3366	NA	unknown function
UHGV-0159964_30	eggNOG-mapper	1226322.HMPREF1545_00053	NA	NA
UHGV-0159964_30	Pfam	PF20536	NA	DUF6751
UHGV-0159964_30	Structural annotation	PF20536, TIGR01563	NA	NA
UHGV-0159964_31	PHROG	phrog_556	minor head protein	head and packaging
UHGV-0159964_31	UniRef90	UniRef90_UPI00164EC49A	minor capsid protein	NA
UHGV-0159964_31	eggNOG-mapper	33035.JPJF01000106_gene3128	NA	NA
UHGV-0159964_31	Pfam	PF11114	Minor capsid protein	Minor_capsid_2
UHGV-0159964_31	Structural annotation	PF11114, TIGR01725	NA	NA
UHGV-0159964_32	PHROG	phrog_3266	tail completion	connector
UHGV-0159964_32	eggNOG-mapper	1232443.BAIA02000078_gene24	NA	NA
UHGV-0159964_32	Structural annotation	PF12691	NA	NA
UHGV-0159964_33	PHROG	phrog_3099	NA	unknown function
UHGV-0159964_33	eggNOG-mapper	1235797.C816_04186	NA	NA
UHGV-0159964_33	Structural annotation	PF10772, TIGR02126, COG3499	NA	NA
UHGV-0159964_34	PHROG	phrog_11299	NA	unknown function
UHGV-0159964_34	eggNOG-mapper	693746.OBV_18160	NA	NA
UHGV-0159964_34	Structural annotation	PF10666	NA	NA
UHGV-0159964_35	PHROG	phrog_706	NA	unknown function
UHGV-0159964_35	UniRef90	UniRef90_A0A2U1BEN4	Bacteriophage Gp15 protein	NA
UHGV-0159964_35	eggNOG-mapper	693746.OBV_18170	Bacteriophage Gp15 protein	NA
UHGV-0159964_35	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-0159964_35	Structural annotation	PF06854	NA	NA
UHGV-0159964_36	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-0159964_36	eggNOG-mapper	1415775.U729_2614	phage tail tape measure protein	NA
UHGV-0159964_36	COG	COG1511	NA	NA
UHGV-0159964_37	PHROG	phrog_1194	NA	unknown function
UHGV-0159964_37	Structural annotation	PF20458, TIGR02126, COG5437	NA	NA
UHGV-0159964_38	PHROG	phrog_6616	tail protein	tail
UHGV-0159964_38	UniRef90	UniRef90_A0A2Z4QA17	KID repeat-containing protein	NA
UHGV-0159964_38	eggNOG-mapper	1235797.C816_04180	NA	NA
UHGV-0159964_38	Structural annotation	PF21683, TIGR02126, COG4379	NA	NA
UHGV-0159964_39	eggNOG-mapper	1235797.C816_04179	Chaperone of endosialidase	NA
UHGV-0159964_39	Structural annotation	NF041249, COG4379	NA	NA
UHGV-0159964_40	UniRef90	UniRef90_A0A8D9PDX6	Zinc-finger double domain protein	NA
UHGV-0159964_40	Structural annotation	PF07238	NA	NA
UHGV-0159964_44	KOfam	K07273	acm; lysozyme	NA
UHGV-0159964_44	PHROG	phrog_291	endolysin	lysis
UHGV-0159964_44	UniRef90	UniRef90_A0A3D2G0D9	Cpl-7 domain-containing protein	NA
UHGV-0159964_44	eggNOG-mapper	877415.JNJQ01000013_gene314	Glycosyl hydrolases family 25	NA
UHGV-0159964_44	Pfam	PF01183	Glycosyl hydrolases family 25	Glyco_hydro_25
UHGV-0159964_44	Pfam	PF08230	CW_7 repeat	CW_7
UHGV-0159964_44	COG	COG3757	Lyzozyme M1 (1,4-beta-N-acetylmuramidase), GH25 family	NA
UHGV-0159964_44	Structural annotation	PF01183, COG3757	NA	NA
UHGV-0159964_45	eggNOG-mapper	33035.JPJF01000090_gene94	NA	NA
UHGV-0159964_46	PHROG	phrog_608	holin	lysis
UHGV-0159964_46	UniRef90	UniRef90_UPI0019604BA7	phage holin, LLH family	NA
UHGV-0159964_46	eggNOG-mapper	1121472.AQWN01000009_gene420	Bacteriophage holin of superfamily 6 (Holin_LLH)	NA
UHGV-0159964_46	Pfam	PF09682	Bacteriophage holin of superfamily 6 (Holin_LLH)	Phage_holin_6_1
UHGV-0159964_46	Structural annotation	PF09682, TIGR01673	NA	NA
UHGV-0159964_47	UniRef90	UniRef90_A0A8D9PDT6	Transcriptional regulatory protein	NA
UHGV-0159964_48	eggNOG-mapper	445972.ANACOL_01878	NA	NA
UHGV-0159964_50	PHROG	phrog_16490	NA	unknown function
UHGV-0159964_50	eggNOG-mapper	1408437.JNJN01000043_gene803	NA	NA
UHGV-0159964_51	eggNOG-mapper	1408437.JNJN01000043_gene802	NA	NA
UHGV-0159964_52	eggNOG-mapper	1378168.N510_03079	NA	NA
UHGV-0159964_53	KOfam	K07726	K07726; putative transcriptional regulator	NA
UHGV-0159964_53	PHROG	phrog_2104	NA	unknown function
UHGV-0159964_53	UniRef90	UniRef90_A0A414P8A6	Helix-turn-helix domain-containing protein	NA
UHGV-0159964_53	eggNOG-mapper	1410631.JHWZ01000002_gene1263	sequence-specific DNA binding	NA
UHGV-0159964_53	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0159964_53	COG	COG2944	DNA-binding transcriptional regulator YiaG, XRE-type HTH domain	NA
UHGV-0159964_53	Structural annotation	PF15731, NF007481, COG2944	NA	NA
UHGV-0159964_55	KOfam	K06400	spoIVCA; site-specific DNA recombinase	NA
UHGV-0159964_55	PHROG	phrog_95	integrase	integration and excision
UHGV-0159964_55	UniRef90	UniRef90_A0A3A6JR24	Recombinase family protein	NA
UHGV-0159964_55	eggNOG-mapper	665956.HMPREF1032_03589	NA	NA
UHGV-0159964_55	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-0159964_55	Pfam	PF07508	Recombinase	Recombinase
UHGV-0159964_55	Pfam	PF13408	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
UHGV-0159964_55	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-0159964_55	Structural annotation	PF07508, PF00239, NF041201, COG1961	NA	NA
UHGV-0159964_56	eggNOG-mapper	428127.EUBDOL_00130	sequence-specific DNA binding	NA
UHGV-0159964_56	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-0159964_56	Structural annotation	PF13443, MF_00535, NF041951, COG1476	NA	NA
UHGV-0159964_57	eggNOG-mapper	877415.JNJQ01000019_gene1779	NA	NA
UHGV-0159964_57	Structural annotation	PF09624, PF12690, NF038353, COG5633	NA	NA
UHGV-0159964_64	PHROG	phrog_5781	NA	unknown function
UHGV-0159964_64	UniRef90	UniRef90_A0A2V2FSM6	Nucleoside 2-deoxyribosyltransferase	NA
UHGV-0159964_64	eggNOG-mapper	573061.Clocel_3558	NA	NA
UHGV-0159964_64	Pfam	PF14359	NA	DUF4406
UHGV-0159964_64	COG	COG3613	Nucleoside 2-deoxyribosyltransferase	NA
UHGV-0159964_64	Structural annotation	PF14359, MF_03036, TIGR02133, COG3613	NA	NA
UHGV-0159964_68	PHROG	phrog_14970	NA	unknown function
UHGV-0159964_68	UniRef90	UniRef90_UPI0018AA3AF0	Rad52/Rad22 family DNA repair protein	NA
UHGV-0159964_68	eggNOG-mapper	272562.CA_C1936	double-strand break repair protein	NA
UHGV-0159964_68	Pfam	PF04098	Rad52/22 family double-strand break repair protein	Rad52_Rad22
UHGV-0159964_68	COG	COG4712	Predicted ssDNA annealing protein, contains HHH motif, Rad42/Rad22/RecT/erf family	NA
UHGV-0159964_68	Structural annotation	PF04098, TIGR00607, COG4712	NA	NA
UHGV-0159964_69	PHROG	phrog_72	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
UHGV-0159964_69	UniRef90	UniRef90_A0A8D9PDS2	NinB protein	NA
UHGV-0159964_69	eggNOG-mapper	445972.ANACOL_01825	NA	NA
UHGV-0159964_69	Structural annotation	PF05772	NA	NA
UHGV-0159964_70	KOfam	K00571	E2.1.1.72; site-specific DNA-methyltransferase (adenine-specific) [EC:2.1.1.72]	NA
UHGV-0159964_70	PHROG	phrog_67	DNA methyltransferase	other
UHGV-0159964_70	UniRef90	UniRef90_A0A0E1KQR8	Methyltransferase	NA
UHGV-0159964_70	eggNOG-mapper	749222.Nitsa_1817	Belongs to the N(4) N(6)-methyltransferase family	NA
UHGV-0159964_70	PADLOC	MTase_II_00157	Type II methyltransferase	RM
UHGV-0159964_70	Pfam	PF01555	DNA methylase	N6_N4_Mtase
UHGV-0159964_70	COG	COG0863	DNA modification methylase	NA
UHGV-0159964_70	Structural annotation	PF01555, MF_01872, NF010253, COG0863	NA	NA
UHGV-0159964_71	PHROG	phrog_7370	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0159964_71	UniRef90	UniRef90_UPI000933A555	HNH endonuclease	NA
UHGV-0159964_71	eggNOG-mapper	1232449.BAHV02000016_gene1841	HNH nucleases	NA
UHGV-0159964_71	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0159964_72	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0159964_72	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0159964_72	UniRef90	UniRef90_UPI001BB47F69	single-stranded DNA-binding protein	NA
UHGV-0159964_72	eggNOG-mapper	693746.OBV_19910	Single-strand binding protein family	NA
UHGV-0159964_72	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0159964_72	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0159964_72	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0159964_72	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0159964_72	Structural annotation	PF00436, MF_00984, NF005241, COG0629	NA	NA