UHGV-0160094

Genome information

Genome length 57,241 bps

CDS count 72

Completeness 91.59% (high-quality)

geNomad score 0.9778

Prediction confidence Confident

Genome information
Genome ID	UHGV-0160094
vOTU ID	vOTU-072719
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_478157
BioSample	NA
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	91.59% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	17
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9778
Virus hallmark genes (geNomad)	6
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	36.82
Jumbo phage	No

Genome content
Genome length	57,241 bps
GC content	49.45%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	72
CDS density	94.21%
Average CDS length	752.29 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0160094_2	KOfam	K01356	lexA; repressor LexA [EC:3.4.21.88]	NA
UHGV-0160094_2	PHROG	phrog_4	transcriptional repressor	transcription regulation
UHGV-0160094_2	UniRef90	UniRef90_A0A413QU80	XRE family transcriptional regulator	NA
UHGV-0160094_2	eggNOG-mapper	1111454.HMPREF1250_0095	Peptidase S24-like	NA
UHGV-0160094_2	PADLOC	retron_type_VI_hth_cluster2_1	NA	Retron
UHGV-0160094_2	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0160094_2	Pfam	PF00717	Peptidase S24-like	Peptidase_S24
UHGV-0160094_2	COG	COG1974	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	NA
UHGV-0160094_2	Structural annotation	PF00717, PF01381, MF_00015, TIGR00498, COG1974	NA	NA
UHGV-0160094_3	KOfam	K22299	rghR; HTH-type transcriptional regulator, competence development regulator	NA
UHGV-0160094_3	PHROG	phrog_3	transcriptional repressor	transcription regulation
UHGV-0160094_3	UniRef90	UniRef90_UPI0006779504	helix-turn-helix domain-containing protein	NA
UHGV-0160094_3	eggNOG-mapper	697284.ERIC2_c10400	sequence-specific DNA binding	NA
UHGV-0160094_3	PADLOC	retron_type_VI_hth_cluster2_1	NA	Retron
UHGV-0160094_3	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0160094_3	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0160094_3	Structural annotation	PF01381, NF041951, COG1396	NA	NA
UHGV-0160094_6	UniRef90	UniRef90_A0A2S0M9G3	XRE family transcriptional regulator	NA
UHGV-0160094_6	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-0160094_6	Structural annotation	PF01381, NF041951, COG1396	NA	NA
UHGV-0160094_7	KOfam	K07741	antB; anti-repressor protein	NA
UHGV-0160094_7	PHROG	phrog_130	anti-repressor Ant	transcription regulation
UHGV-0160094_7	UniRef90	UniRef90_A0A1M6P4H8	Phage antirepressor protein YoqD, KilAC domain	NA
UHGV-0160094_7	eggNOG-mapper	1151292.QEW_0652	BRO family, N-terminal domain	NA
UHGV-0160094_7	Pfam	PF02498	BRO family, N-terminal domain	Bro-N
UHGV-0160094_7	Pfam	PF03374	Phage antirepressor protein KilAC domain	ANT
UHGV-0160094_7	COG	COG3617	Prophage antirepressor	NA
UHGV-0160094_7	Structural annotation	PF03374, PF02498, COG3645	NA	NA
UHGV-0160094_8	PHROG	phrog_7735	excisionase	integration and excision
UHGV-0160094_8	Structural annotation	PF12728, NF033787	NA	NA
UHGV-0160094_9	PHROG	phrog_25045	NA	unknown function
UHGV-0160094_9	UniRef90	UniRef90_A0A2S0M9C6	LysM domain-containing protein	NA
UHGV-0160094_9	eggNOG-mapper	1380354.JIAN01000007_gene84	PFAM Peptidoglycan-binding lysin domain	NA
UHGV-0160094_9	Pfam	PF01476	LysM domain	LysM
UHGV-0160094_9	COG	COG1388	LysM repeat	NA
UHGV-0160094_9	Structural annotation	PF01476, MF_02014, NF010723	NA	NA
UHGV-0160094_10	Structural annotation	PF20892	NA	NA
UHGV-0160094_11	PHROG	phrog_253	Mu Gam-like end protection	DNA, RNA and nucleotide metabolism
UHGV-0160094_11	UniRef90	UniRef90_UPI001472A545	siphovirus Gp157 family protein	NA
UHGV-0160094_11	eggNOG-mapper	699218.HMPREF0889_0310	Siphovirus Gp157	NA
UHGV-0160094_11	Pfam	PF05565	Siphovirus Gp157	Sipho_Gp157
UHGV-0160094_11	Structural annotation	PF05565	NA	NA
UHGV-0160094_12	PHROG	phrog_2324	Erf-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0160094_12	UniRef90	UniRef90_UPI00147348AC	ERF family protein	NA
UHGV-0160094_12	eggNOG-mapper	1209989.TepiRe1_1126	ERF superfamily	NA
UHGV-0160094_12	Pfam	PF04404	ERF superfamily	ERF
UHGV-0160094_12	Structural annotation	PF04404, TIGR00607	NA	NA
UHGV-0160094_13	PHROG	phrog_72	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
UHGV-0160094_13	UniRef90	UniRef90_R5BGH3	Conserved domain protein	NA
UHGV-0160094_13	eggNOG-mapper	1399942.U3PCT8_9CAUD	NA	NA
UHGV-0160094_14	PHROG	phrog_1934	NA	unknown function
UHGV-0160094_14	UniRef90	UniRef90_UPI001957D237	zinc-finger-containing protein	NA
UHGV-0160094_14	eggNOG-mapper	397290.C810_01488	zinc-finger-containing domain	NA
UHGV-0160094_14	Pfam	PF11672	zinc-finger-containing domain	DUF3268
UHGV-0160094_15	KOfam	K07451	mcrA; 5-methylcytosine-specific restriction enzyme A [EC:3.1.21.-]	NA
UHGV-0160094_15	PHROG	phrog_7370	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0160094_15	UniRef90	UniRef90_A0A2S0M9D0	HNHc domain-containing protein	NA
UHGV-0160094_15	eggNOG-mapper	547559.Nmag_0239	HNH endonuclease	NA
UHGV-0160094_15	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0160094_15	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0160094_15	Structural annotation	PF01844, COG1403	NA	NA
UHGV-0160094_17	PHROG	phrog_7882	DnaD-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0160094_17	UniRef90	UniRef90_A0A848EU91	Helix-turn-helix domain-containing protein	NA
UHGV-0160094_17	eggNOG-mapper	1232428.CAVO010000067_gene439	NA	NA
UHGV-0160094_17	Pfam	PF06970	Replication initiator protein A (RepA) N-terminus	RepA_N
UHGV-0160094_17	Structural annotation	PF06970, TIGR01714, COG5625	NA	NA
UHGV-0160094_18	Structural annotation	PF11417	NA	NA
UHGV-0160094_19	Pfam	PF18912	Double zinc ribbon domain	DZR_2
UHGV-0160094_20	PHROG	phrog_37395	NA	unknown function
UHGV-0160094_21	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0160094_21	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0160094_21	UniRef90	UniRef90_A0A2S0M9E2	Single-stranded DNA-binding protein	NA
UHGV-0160094_21	eggNOG-mapper	1232428.CAVO010000067_gene437	single-stranded DNA binding	NA
UHGV-0160094_21	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0160094_21	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0160094_21	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0160094_21	Structural annotation	PF00436, MF_00984, NF005406, COG0629	NA	NA
UHGV-0160094_22	KOfam	K03530	hupB; DNA-binding protein HU-beta	NA
UHGV-0160094_22	PHROG	phrog_379	DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0160094_22	UniRef90	UniRef90_A0A2S0M9B9	HU family DNA-binding protein	NA
UHGV-0160094_22	eggNOG-mapper	1173029.JH980292_gene2745	Histone-like DNA-binding protein which is capable of wrapping DNA to stabilize it, and thus to prevent its denaturation under extreme environmental conditions	NA
UHGV-0160094_22	Pfam	PF00216	Bacterial DNA-binding protein	Bac_DNA_binding
UHGV-0160094_22	COG	COG0776	Bacterial nucleoid DNA-binding protein IHF-alpha	NA
UHGV-0160094_22	Structural annotation	PF00216, MF_00381, NF007945, COG0776	NA	NA
UHGV-0160094_24	UniRef90	UniRef90_S7HSH7	NA	NA
UHGV-0160094_24	eggNOG-mapper	1273103.NM10_02357	Protein conserved in bacteria	NA
UHGV-0160094_24	Pfam	PF07866	NA	DUF1653
UHGV-0160094_24	COG	COG4728	NA	NA
UHGV-0160094_24	Structural annotation	PF07866, COG4728	NA	NA
UHGV-0160094_25	KOfam	K00558	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	NA
UHGV-0160094_25	PHROG	phrog_116	DNA methyltransferase	other
UHGV-0160094_25	UniRef90	UniRef90_S7J909	Cytosine-specific methyltransferase	NA
UHGV-0160094_25	eggNOG-mapper	1273103.NM10_02362	Belongs to the class I-like SAM-binding methyltransferase superfamily. C5-methyltransferase family	NA
UHGV-0160094_25	PADLOC	MTase_II_00058	Type II methyltransferase	RM
UHGV-0160094_25	Pfam	PF00145	C-5 cytosine-specific DNA methylase	DNA_methylase
UHGV-0160094_25	NCBIFam	TIGR00675.1	DNA (cytosine-5-)-methyltransferase	NA
UHGV-0160094_25	COG	COG0270	DNA-cytosine methylase	NA
UHGV-0160094_25	Structural annotation	PF00145, TIGR00675, COG0270	NA	NA
UHGV-0160094_26	PHROG	phrog_236	nucleotide kinase	other
UHGV-0160094_26	UniRef90	UniRef90_A0A848EVQ9	NA	NA
UHGV-0160094_26	eggNOG-mapper	706434.HMPREF9429_00388	NA	NA
UHGV-0160094_26	Pfam	PF11753	NA	DUF3310
UHGV-0160094_28	KOfam	K01160	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	NA
UHGV-0160094_28	PHROG	phrog_140	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0160094_28	UniRef90	UniRef90_A0A2S0M9F1	RusA family crossover junction endodeoxyribonuclease	NA
UHGV-0160094_28	eggNOG-mapper	1273103.NM10_01114	Endodeoxyribonuclease RusA	NA
UHGV-0160094_28	Pfam	PF05866	Endodeoxyribonuclease RusA	RusA
UHGV-0160094_28	Structural annotation	PF05866, NF007305, COG4570	NA	NA
UHGV-0160094_30	Structural annotation	PF21098, MF_01503	NA	NA
UHGV-0160094_32	PHROG	phrog_98	NA	unknown function
UHGV-0160094_32	UniRef90	UniRef90_UPI001D0281DF	YopX family protein	NA
UHGV-0160094_32	eggNOG-mapper	888055.HMPREF9015_01088	YopX protein	NA
UHGV-0160094_32	Pfam	PF09643	YopX protein	YopX
UHGV-0160094_32	NCBIFam	TIGR01671.1	phage conserved hypothetical protein TIGR01671	NA
UHGV-0160094_32	Structural annotation	PF09643, TIGR01671	NA	NA
UHGV-0160094_35	KOfam	K01493	comEB; dCMP deaminase [EC:3.5.4.12]	NA
UHGV-0160094_35	PHROG	phrog_174	dCMP deaminase	DNA, RNA and nucleotide metabolism
UHGV-0160094_35	UniRef90	UniRef90_A0A7C5NUV5	DNA topoisomerase (ATP-hydrolyzing) (Fragment)	NA
UHGV-0160094_35	eggNOG-mapper	1007096.BAGW01000013_gene2399	MafB19-like deaminase	NA
UHGV-0160094_35	PADLOC	dCTPase	NA	NA
UHGV-0160094_35	Pfam	PF14890	Intein splicing domain	Intein_splicing
UHGV-0160094_35	NCBIFam	TIGR01445.1	intein N-terminal splicing region	NA
UHGV-0160094_35	COG	COG2131	Deoxycytidylate deaminase	NA
UHGV-0160094_36	eggNOG-mapper	401526.TcarDRAFT_1279	phage transcriptional regulator, RinA family	NA
UHGV-0160094_36	Structural annotation	PF05263, MF_00245, TIGR01636, COG2739	NA	NA
UHGV-0160094_37	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0160094_37	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0160094_37	UniRef90	UniRef90_A0A329EY95	Transcriptional regulator	NA
UHGV-0160094_37	eggNOG-mapper	910314.HMPREF9220_1106	Helix-turn-helix XRE-family like proteins	NA
UHGV-0160094_37	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0160094_37	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-0160094_38	PHROG	phrog_16123	NA	unknown function
UHGV-0160094_38	eggNOG-mapper	1273103.NM10_00919	NA	NA
UHGV-0160094_39	Structural annotation	PF20075, TIGR02612	NA	NA
UHGV-0160094_42	PHROG	phrog_14350	NA	unknown function
UHGV-0160094_42	UniRef90	UniRef90_F7NK80	NA	NA
UHGV-0160094_42	eggNOG-mapper	679201.HMPREF9334_00497	NA	NA
UHGV-0160094_43	PHROG	phrog_374	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0160094_43	UniRef90	UniRef90_A0A6I2QM54	HNH endonuclease	NA
UHGV-0160094_43	eggNOG-mapper	879308.HMPREF9130_0377	NA	NA
UHGV-0160094_43	Structural annotation	PF00847	NA	NA
UHGV-0160094_44	Structural annotation	PF07867	NA	NA
UHGV-0160094_45	PHROG	phrog_309	terminase small subunit	head and packaging
UHGV-0160094_45	UniRef90	UniRef90_A0A2S0M9J8	Transposase	NA
UHGV-0160094_45	eggNOG-mapper	1007096.BAGW01000022_gene2658	transposase activity	NA
UHGV-0160094_45	Pfam	PF01527	Transposase	HTH_Tnp_1
UHGV-0160094_45	COG	COG2963	Transposase InsE and inactivated derivatives	NA
UHGV-0160094_45	Structural annotation	PF07141	NA	NA
UHGV-0160094_46	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0160094_46	PHROG	phrog_2	terminase large subunit	head and packaging
UHGV-0160094_46	UniRef90	UniRef90_A0A6H2A5Y5	Putative terminase (Fragment)	NA
UHGV-0160094_46	eggNOG-mapper	1232428.CAVO010000067_gene427	DNA packaging	NA
UHGV-0160094_46	COG	COG1783	Phage terminase large subunit	NA
UHGV-0160094_46	Structural annotation	PF03354, PF17289, MF_04146, TIGR01547, COG4373	NA	NA
UHGV-0160094_47	PHROG	phrog_1216	portal protein	head and packaging
UHGV-0160094_47	UniRef90	UniRef90_A0A0U1L376	Phage portal protein	NA
UHGV-0160094_47	eggNOG-mapper	1232428.CAVO010000067_gene425	Membrane	NA
UHGV-0160094_47	COG	COG3064	Membrane protein TolA involved in colicin uptake	NA
UHGV-0160094_47	Structural annotation	PF16510, MF_04120, TIGR01538, COG4383	NA	NA
UHGV-0160094_49	eggNOG-mapper	1232428.CAVO010000067_gene424	NA	NA
UHGV-0160094_50	PHROG	phrog_1328	major head protein	head and packaging
UHGV-0160094_50	UniRef90	UniRef90_UPI000413677B	NA	NA
UHGV-0160094_50	eggNOG-mapper	1232428.CAVO010000067_gene423	NA	NA
UHGV-0160094_50	Pfam	PF17236	NA	DUF5309
UHGV-0160094_50	Structural annotation	PF17236, MF_04133, NF033394, COG4834	NA	NA
UHGV-0160094_52	Structural annotation	PF20387	NA	NA
UHGV-0160094_53	eggNOG-mapper	1485543.JMME01000020_gene785	NA	NA
UHGV-0160094_53	Structural annotation	PF20387	NA	NA
UHGV-0160094_54	eggNOG-mapper	1232428.CAVO010000067_gene421	cellulase activity	NA
UHGV-0160094_54	COG	COG4733	Phage-related protein, tail protein J	NA
UHGV-0160094_54	Structural annotation	PF18001, PF01828, PF16389, MF_01905, NF010681, COG3401, COG3506	NA	NA
UHGV-0160094_55	PHROG	phrog_5417	NA	unknown function
UHGV-0160094_55	UniRef90	UniRef90_H8FY63	Putative BcepGomrgp18	NA
UHGV-0160094_55	eggNOG-mapper	1589747.A0A0B5A4F6_9CAUD	NA	NA
UHGV-0160094_55	Structural annotation	PF12571	NA	NA
UHGV-0160094_56	eggNOG-mapper	1150626.PHAMO_80093	extracellular polysaccharide biosynthetic process	NA
UHGV-0160094_56	COG	COG3206	Exopolysaccharide export protein/domain GumC/Wzc1	NA
UHGV-0160094_56	Structural annotation	NF012201	NA	NA
UHGV-0160094_57	PHROG	phrog_5717	tail protein	tail
UHGV-0160094_57	UniRef90	UniRef90_UPI0008EFFA34	phage tail protein	NA
UHGV-0160094_57	eggNOG-mapper	568816.Acin_1301	tail collar domain protein	NA
UHGV-0160094_57	COG	COG4675	Phage tail collar domain	NA
UHGV-0160094_58	eggNOG-mapper	1232428.CAVO010000067_gene418	NA	NA
UHGV-0160094_58	Structural annotation	PF14301	NA	NA
UHGV-0160094_59	KOfam	K07496	K07496; putative transposase	NA
UHGV-0160094_59	PHROG	phrog_506	transposase	integration and excision
UHGV-0160094_59	UniRef90	UniRef90_S7ISW5	Transposase ISLasa12	NA
UHGV-0160094_59	eggNOG-mapper	1273103.NM10_11841	TIGRFAM transposase, IS605 OrfB family	NA
UHGV-0160094_59	PADLOC	Type_V_V_U3	Cas12	CRISPR-CAS
UHGV-0160094_59	Pfam	PF01385	Probable transposase	OrfB_IS605
UHGV-0160094_59	Pfam	PF07282	Putative transposase DNA-binding domain	OrfB_Zn_ribbon
UHGV-0160094_59	NCBIFam	NF040570.1	RNA-guided endonuclease TnpB family protein	NA
UHGV-0160094_59	COG	COG0675	Transposase	NA
UHGV-0160094_59	Structural annotation	PF07282, PF01385, MF_00034, NF040570, COG0675	NA	NA
UHGV-0160094_61	PHROG	phrog_35892	NA	unknown function
UHGV-0160094_61	Pfam	PF13306	BspA type Leucine rich repeat region (6 copies)	LRR_5
UHGV-0160094_63	KOfam	K14059	int; integrase	NA
UHGV-0160094_63	PHROG	phrog_1	integrase	integration and excision
UHGV-0160094_63	UniRef90	UniRef90_UPI0004143D65	tyrosine-type recombinase/integrase	NA
UHGV-0160094_63	eggNOG-mapper	568816.Acin_1821	Phage integrase family	NA
UHGV-0160094_63	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0160094_63	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0160094_63	Structural annotation	PF00589, MF_01808, NF007246, COG4974	NA	NA
UHGV-0160094_65	PHROG	phrog_28789	NA	unknown function
UHGV-0160094_65	UniRef90	UniRef90_R7MZN4	Conserved domain protein	NA
UHGV-0160094_65	eggNOG-mapper	1273103.NM10_00934	NA	NA
UHGV-0160094_66	PHROG	phrog_34863	NA	unknown function
UHGV-0160094_66	UniRef90	UniRef90_UPI001D017339	chitosanase	NA
UHGV-0160094_66	eggNOG-mapper	1273103.NM10_00929	LysM domain	NA
UHGV-0160094_66	Pfam	PF21277	Type VI secretion system spike protein VgrG3-like, C-terminal	T6SS_VgrG3-like_C
UHGV-0160094_66	COG	COG1388	LysM repeat	NA
UHGV-0160094_66	Structural annotation	PF21277	NA	NA
UHGV-0160094_67	UniRef90	UniRef90_S7HTA2	TarH domain-containing protein	NA
UHGV-0160094_68	eggNOG-mapper	883156.HMPREF9282_00569	NA	NA
UHGV-0160094_68	Structural annotation	PF11134, MF_03008, NF010237, TIGR04362, COG4257	NA	NA
UHGV-0160094_69	Structural annotation	PF00765, MF_02210, NF007644, COG2153	NA	NA
UHGV-0160094_70	UniRef90	UniRef90_UPI00047F33D6	Hint domain-containing protein	NA
UHGV-0160094_70	eggNOG-mapper	1232428.CAVO010000067_gene416	NA	NA
UHGV-0160094_70	Pfam	PF07591	Pretoxin HINT domain	PT-HINT
UHGV-0160094_70	NCBIFam	TIGR01443.1	intein C-terminal splicing region	NA
UHGV-0160094_70	Structural annotation	PF01079, NF038136	NA	NA
UHGV-0160094_72	PHROG	phrog_9854	NA	unknown function
UHGV-0160094_72	UniRef90	UniRef90_UPI0014728F49	transglycosylase SLT domain-containing protein	NA
UHGV-0160094_72	eggNOG-mapper	1232428.CAVO010000067_gene414	Type III restriction enzyme, res subunit	NA
UHGV-0160094_72	Pfam	PF01464	Transglycosylase SLT domain	SLT
UHGV-0160094_72	Pfam	PF18763	ddrB-like ParB superfamily domain	ddrB-ParB
UHGV-0160094_72	Pfam	PF18857	Large polyvalent protein associated domain 38	LPD38
UHGV-0160094_72	COG	COG0741	Soluble lytic murein transglycosylase or regulatory protein s ( may contain LysM/invasin domain)	NA