UHGV-0160105

Genome information

Genome length 34,884 bps

CDS count 53

Completeness 99.79% (high-quality)

geNomad score 0.9747

Prediction confidence Confident

Genome information
Genome ID	UHGV-0160105
vOTU ID	vOTU-066826
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_493750
BioSample	NA
Country	Netherlands
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	99.79% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	12
CheckV host markers	2
Recoded stop codon	No

Viral signal
geNomad score	0.9747
Virus hallmark genes (geNomad)	11
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	27.84
Jumbo phage	No

Genome content
Genome length	34,884 bps
GC content	41.54%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	53
CDS density	91.68%
Average CDS length	605.89 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0160105_1	UniRef90	UniRef90_R5QKX6	(Dimethylallyl)adenosine tRNA methylthiotransferase MiaB	NA
UHGV-0160105_1	eggNOG-mapper	1449050.JNLE01000003_gene3708	Catalyzes the methylthiolation of N6- (dimethylallyl)adenosine (i(6)A), leading to the formation of 2- methylthio-N6-(dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine	NA
UHGV-0160105_1	COG	COG0621	tRNA A37 methylthiotransferase MiaB	NA
UHGV-0160105_2	KOfam	K06400	spoIVCA; site-specific DNA recombinase	NA
UHGV-0160105_2	PHROG	phrog_95	integrase	integration and excision
UHGV-0160105_2	UniRef90	UniRef90_B0NAW3	DNA-invertase hin	NA
UHGV-0160105_2	eggNOG-mapper	411468.CLOSCI_00582	Recombinase	NA
UHGV-0160105_2	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-0160105_2	Pfam	PF07508	Recombinase	Recombinase
UHGV-0160105_2	Pfam	PF13408	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
UHGV-0160105_2	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-0160105_2	Structural annotation	PF07508, PF00239, NF041201, COG1961	NA	NA
UHGV-0160105_3	KOfam	K10716	kch, trkA, mthK, pch; voltage-gated potassium channel	NA
UHGV-0160105_3	PHROG	phrog_7872	NA	unknown function
UHGV-0160105_3	UniRef90	UniRef90_A0A350VIR8	Ion transporter	NA
UHGV-0160105_3	eggNOG-mapper	1211844.CBLM010000091_gene3165	Ion transport protein	NA
UHGV-0160105_3	Pfam	PF00520	Ion transport protein	Ion_trans
UHGV-0160105_3	COG	COG0569	Trk/Ktr K+ transport system regulatory component TrkA/KtrA/KtrC, RCK domain	NA
UHGV-0160105_3	Structural annotation	PF00520, NF040645	NA	NA
UHGV-0160105_4	KOfam	K01356	lexA; repressor LexA [EC:3.4.21.88]	NA
UHGV-0160105_4	PHROG	phrog_4	transcriptional repressor	transcription regulation
UHGV-0160105_4	UniRef90	UniRef90_C4Z801	SOS-response transcriptional repressor, LexA	NA
UHGV-0160105_4	eggNOG-mapper	1321820.HMPREF1983_00958	Helix-turn-helix XRE-family like proteins	NA
UHGV-0160105_4	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0160105_4	Pfam	PF00717	Peptidase S24-like	Peptidase_S24
UHGV-0160105_4	COG	COG1974	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	NA
UHGV-0160105_4	Structural annotation	PF00717, PF01381, MF_00015, TIGR00498, COG1974	NA	NA
UHGV-0160105_5	KOfam	K07729	K07729; putative transcriptional regulator	NA
UHGV-0160105_5	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0160105_5	UniRef90	UniRef90_C4Z802	HTH cro/C1-type domain-containing protein	NA
UHGV-0160105_5	eggNOG-mapper	1256908.HMPREF0373_00646	Helix-turn-helix XRE-family like proteins	NA
UHGV-0160105_5	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0160105_5	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0160105_5	Structural annotation	PF01381, NF041951, COG1396	NA	NA
UHGV-0160105_8	Structural annotation	PF09486, TIGR03090, COG5420	NA	NA
UHGV-0160105_9	Structural annotation	PF18066, NF007780, COG1544	NA	NA
UHGV-0160105_12	UniRef90	UniRef90_A0A417WAJ1	HNH endonuclease	NA
UHGV-0160105_12	eggNOG-mapper	1235800.C819_02254	HNH nucleases	NA
UHGV-0160105_13	eggNOG-mapper	1235792.C808_00065	NA	NA
UHGV-0160105_14	eggNOG-mapper	999413.HMPREF1094_04705	PcfJ-like protein	NA
UHGV-0160105_15	PHROG	phrog_8470	NA	unknown function
UHGV-0160105_15	UniRef90	UniRef90_UPI000CDA663D	PcfJ domain-containing protein	NA
UHGV-0160105_15	eggNOG-mapper	999413.HMPREF1094_04705	PcfJ-like protein	NA
UHGV-0160105_15	Pfam	PF14284	PcfJ-like protein	PcfJ
UHGV-0160105_15	Structural annotation	PF14284, NF008072	NA	NA
UHGV-0160105_16	PHROG	phrog_15077	NA	unknown function
UHGV-0160105_16	UniRef90	UniRef90_UPI001D0741A0	NA	NA
UHGV-0160105_16	eggNOG-mapper	1235792.C808_00069	NA	NA
UHGV-0160105_16	Structural annotation	NF033725	NA	NA
UHGV-0160105_19	Structural annotation	PF17384, MF_00436, NF033216, COG4568	NA	NA
UHGV-0160105_21	eggNOG-mapper	483218.BACPEC_01162	sequence-specific DNA binding	NA
UHGV-0160105_21	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0160105_22	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0160105_22	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0160105_22	UniRef90	UniRef90_B7AR52	HTH cro/C1-type domain-containing protein	NA
UHGV-0160105_22	eggNOG-mapper	483218.BACPEC_01162	sequence-specific DNA binding	NA
UHGV-0160105_22	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0160105_22	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0160105_22	Structural annotation	PF01381, MF_00535, NF041951, COG1476	NA	NA
UHGV-0160105_24	PHROG	phrog_3584	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0160105_24	UniRef90	UniRef90_A0A4P8IFK4	NA	NA
UHGV-0160105_24	eggNOG-mapper	411902.CLOBOL_03891	NA	NA
UHGV-0160105_24	Structural annotation	PF21578	NA	NA
UHGV-0160105_25	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0160105_25	UniRef90	UniRef90_A0A7X9DAW2	RNA polymerase subunit sigma-24	NA
UHGV-0160105_25	eggNOG-mapper	755731.Clo1100_3798	NA	NA
UHGV-0160105_25	Structural annotation	PF07374, MF_00674, NF001074	NA	NA
UHGV-0160105_27	PHROG	phrog_5110	terminase small subunit	head and packaging
UHGV-0160105_27	UniRef90	UniRef90_A0A1C5LZF0	Phage terminase, small subunit	NA
UHGV-0160105_27	eggNOG-mapper	349161.Dred_2608	NA	NA
UHGV-0160105_27	Pfam	PF05119	Phage terminase, small subunit	Terminase_4
UHGV-0160105_27	Structural annotation	PF05119, TIGR01558, COG3747	NA	NA
UHGV-0160105_28	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0160105_28	UniRef90	UniRef90_D4M588	Phage terminase-like protein, large subunit	NA
UHGV-0160105_28	eggNOG-mapper	1232452.BAIB02000007_gene1629	Phage terminase-like protein large subunit	NA
UHGV-0160105_28	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0160105_28	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0160105_28	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0160105_28	Structural annotation	PF20441, PF03354, MF_04146, TIGR01547, COG4626	NA	NA
UHGV-0160105_29	PHROG	phrog_12	portal protein	head and packaging
UHGV-0160105_29	UniRef90	UniRef90_UPI00156D5DC9	phage portal protein	NA
UHGV-0160105_29	eggNOG-mapper	1232452.BAIB02000007_gene1627	Phage portal protein, HK97 family	NA
UHGV-0160105_29	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0160105_29	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0160105_29	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-0160105_30	KOfam	K01358	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	NA
UHGV-0160105_30	PHROG	phrog_94	head maturation protease	head and packaging
UHGV-0160105_30	UniRef90	UniRef90_A0A0M6WHX9	ATP-dependent Clp protease proteolytic subunit	NA
UHGV-0160105_30	eggNOG-mapper	1235792.C808_00085	Clp protease	NA
UHGV-0160105_30	Pfam	PF00574	Clp protease	CLP_protease
UHGV-0160105_30	COG	COG0740	ATP-dependent protease ClpP, protease subunit	NA
UHGV-0160105_30	Structural annotation	PF00574, MF_00444, NF011090, COG0740	NA	NA
UHGV-0160105_31	PHROG	phrog_10	major head protein	head and packaging
UHGV-0160105_31	UniRef90	UniRef90_D4M591	Phage capsid family	NA
UHGV-0160105_31	eggNOG-mapper	1232452.BAIB02000007_gene1625	Phage capsid family	NA
UHGV-0160105_31	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0160105_31	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0160105_31	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0160105_31	Structural annotation	PF05065, TIGR01554, COG4653	NA	NA
UHGV-0160105_33	UniRef90	UniRef90_A0A844KCF4	Phage head closure protein	NA
UHGV-0160105_33	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0160105_34	Structural annotation	PF05657	NA	NA
UHGV-0160105_35	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0160105_35	UniRef90	UniRef90_D4M595	Phage protein, HK97 gp10 family	NA
UHGV-0160105_35	NCBIFam	TIGR01725.1	HK97-gp10 family putative phage morphogenesis protein	NA
UHGV-0160105_35	Structural annotation	TIGR01725, COG5005	NA	NA
UHGV-0160105_36	PHROG	phrog_88	major tail protein	tail
UHGV-0160105_36	UniRef90	UniRef90_A0A1Q9J4Y1	Phage tail protein	NA
UHGV-0160105_36	NCBIFam	TIGR01603.1	major tail protein	NA
UHGV-0160105_36	COG	COG5492	NA	NA
UHGV-0160105_36	Structural annotation	PF04630, TIGR01603, COG3498	NA	NA
UHGV-0160105_39	PHROG	phrog_1272	tail length tape measure protein	tail
UHGV-0160105_39	UniRef90	UniRef90_A0A350VIV1	Phage tail tape measure protein	NA
UHGV-0160105_39	eggNOG-mapper	1035184.HMPREF1042_1328	Phage tail tape measure protein	NA
UHGV-0160105_39	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-0160105_39	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-0160105_39	COG	COG5280	Phage-related minor tail protein	NA
UHGV-0160105_40	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-0160105_40	UniRef90	UniRef90_A0A350VIV2	Phage tail protein	NA
UHGV-0160105_40	eggNOG-mapper	1232452.BAIB02000007_gene1615	phage tail	NA
UHGV-0160105_40	COG	COG4722	Phage-related protein YomH	NA
UHGV-0160105_40	Structural annotation	PF20195, TIGR01633, COG4722	NA	NA
UHGV-0160105_41	PHROG	phrog_13289	tail protein	tail
UHGV-0160105_41	UniRef90	UniRef90_A0A350VIV3	Prophage_tail domain-containing protein	NA
UHGV-0160105_41	eggNOG-mapper	1235798.C817_02568	Prophage endopeptidase tail	NA
UHGV-0160105_41	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-0160105_41	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-0160105_41	COG	COG2885	Outer membrane protein OmpA and related peptidoglycan-associated (lipo)proteins	NA
UHGV-0160105_41	Structural annotation	PF14594, TIGR01665, COG4926	NA	NA
UHGV-0160105_42	PHROG	phrog_11037	NA	unknown function
UHGV-0160105_42	UniRef90	UniRef90_A0A0M6WKQ1	Phage_lysozyme2 domain-containing protein	NA
UHGV-0160105_42	eggNOG-mapper	33035.JPJF01000023_gene3229	NA	NA
UHGV-0160105_42	Pfam	PF18013	Phage tail lysozyme	Phage_lysozyme2
UHGV-0160105_42	Structural annotation	PF18013	NA	NA
UHGV-0160105_43	eggNOG-mapper	1235798.C817_04596	the current gene model (or a revised gene model) may contain a frame shift	NA
UHGV-0160105_43	COG	COG4675	Phage tail collar domain	NA
UHGV-0160105_44	Structural annotation	PF00041	NA	NA
UHGV-0160105_45	PHROG	phrog_15594	NA	unknown function
UHGV-0160105_45	eggNOG-mapper	1118055.CAGU01000013_gene763	NA	NA
UHGV-0160105_45	Structural annotation	PF16640, TIGR04488	NA	NA
UHGV-0160105_46	PHROG	phrog_31538	NA	unknown function
UHGV-0160105_47	PHROG	phrog_13589	NA	unknown function
UHGV-0160105_47	eggNOG-mapper	742733.HMPREF9469_05009	NA	NA
UHGV-0160105_48	PHROG	phrog_13589	NA	unknown function
UHGV-0160105_48	eggNOG-mapper	742733.HMPREF9469_05009	NA	NA
UHGV-0160105_49	PHROG	phrog_199	holin	lysis
UHGV-0160105_49	UniRef90	UniRef90_A0A174GVG0	Phage-related holin (Lysis protein)	NA
UHGV-0160105_49	eggNOG-mapper	411462.DORLON_00766	Bacteriophage holin family	NA
UHGV-0160105_49	Pfam	PF05105	Bacteriophage holin family	Phage_holin_4_1
UHGV-0160105_49	NCBIFam	TIGR01593.1	toxin secretion/phage lysis holin	NA
UHGV-0160105_49	COG	COG4824	Phage-related holin (Lysis protein)	NA
UHGV-0160105_49	Structural annotation	PF05105, TIGR01593, COG4824	NA	NA
UHGV-0160105_50	KOfam	K01448	amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0160105_50	PHROG	phrog_435	endolysin	lysis
UHGV-0160105_50	UniRef90	UniRef90_A0A355TJT7	MurNAc-LAA domain-containing protein	NA
UHGV-0160105_50	eggNOG-mapper	1469948.JPNB01000001_gene537	hmm pf01520	NA
UHGV-0160105_50	Pfam	PF01520	N-acetylmuramoyl-L-alanine amidase	Amidase_3
UHGV-0160105_50	COG	COG0860	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0160105_50	Structural annotation	PF01520, PF18342, MF_00417, TIGR02883, COG0860, COG4991	NA	NA
UHGV-0160105_51	UniRef90	UniRef90_A0A174GRH8	Autolytic lysozyme	NA
UHGV-0160105_51	eggNOG-mapper	428126.CLOSPI_02072	lysozyme activity	NA
UHGV-0160105_51	COG	COG1388	LysM repeat	NA
UHGV-0160105_52	PHROG	phrog_199	holin	lysis
UHGV-0160105_52	UniRef90	UniRef90_A0A349YRM9	Holin	NA
UHGV-0160105_52	eggNOG-mapper	411468.CLOSCI_00532	toxin secretion phage lysis holin	NA
UHGV-0160105_52	Pfam	PF05105	Bacteriophage holin family	Phage_holin_4_1
UHGV-0160105_52	NCBIFam	TIGR01593.1	toxin secretion/phage lysis holin	NA
UHGV-0160105_52	COG	COG4824	Phage-related holin (Lysis protein)	NA
UHGV-0160105_52	Structural annotation	PF05105, TIGR01593, COG4824	NA	NA
UHGV-0160105_53	KOfam	K06168	miaB; tRNA-2-methylthio-N6-dimethylallyladenosine synthase [EC:2.8.4.3]	NA
UHGV-0160105_53	UniRef90	UniRef90_A0A3D2X9C1	tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB (Fragment)	NA
UHGV-0160105_53	eggNOG-mapper	537007.BLAHAN_04736	Catalyzes the methylthiolation of N6- (dimethylallyl)adenosine (i(6)A), leading to the formation of 2- methylthio-N6-(dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine	NA
UHGV-0160105_53	Pfam	PF00919	NA	UPF0004
UHGV-0160105_53	COG	COG0621	tRNA A37 methylthiotransferase MiaB	NA