UHGV-0160132

Genome information

Genome length 25,086 bps

CDS count 30

Completeness 66.41% (medium-quality)

geNomad score 0.9777

Prediction confidence Confident

Genome information
Genome ID	UHGV-0160132
vOTU ID	vOTU-027958
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_466505
BioSample	SAMN06111969
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	66.41% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	8
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9777
Virus hallmark genes (geNomad)	5
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	9.97
Jumbo phage	No

Genome content
Genome length	25,086 bps
GC content	44.86%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	30
CDS density	89.91%
Average CDS length	755.30 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0160132_1	KOfam	K07486	K07486; transposase	NA
UHGV-0160132_1	PHROG	phrog_2199	transposase	integration and excision
UHGV-0160132_1	UniRef90	UniRef90_A0A414HQB5	IS110 family transposase (Fragment)	NA
UHGV-0160132_1	eggNOG-mapper	552398.HMPREF0866_03168	Transposase IS116/IS110/IS902 family	NA
UHGV-0160132_1	Pfam	PF01548	Transposase	DEDD_Tnp_IS110
UHGV-0160132_1	COG	COG3547	Transposase	NA
UHGV-0160132_1	Structural annotation	PF01548, MF_00651, NF033542, COG3547	NA	NA
UHGV-0160132_2	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0160132_2	UniRef90	UniRef90_D4M595	Phage protein, HK97 gp10 family	NA
UHGV-0160132_2	Structural annotation	TIGR01725, COG5005	NA	NA
UHGV-0160132_3	PHROG	phrog_88	major tail protein	tail
UHGV-0160132_3	UniRef90	UniRef90_A0A416ZS16	Phage tail protein	NA
UHGV-0160132_3	NCBIFam	TIGR01603.1	major tail protein	NA
UHGV-0160132_3	Structural annotation	PF04630, TIGR01603, COG3498	NA	NA
UHGV-0160132_5	KOfam	K11499	CENPF; centromere protein F	NA
UHGV-0160132_5	PHROG	phrog_1533	tail length tape measure protein	tail
UHGV-0160132_5	UniRef90	UniRef90_A0A373N0I0	Phage tail tape measure protein	NA
UHGV-0160132_5	eggNOG-mapper	742740.HMPREF9474_01203	Phage tail tape measure protein, TP901 family	NA
UHGV-0160132_5	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-0160132_5	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-0160132_5	COG	COG5280	Phage-related minor tail protein	NA
UHGV-0160132_5	Structural annotation	PF10145, TIGR01760, COG5280	NA	NA
UHGV-0160132_6	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-0160132_6	UniRef90	UniRef90_A0A844KEE5	Phage tail protein	NA
UHGV-0160132_6	eggNOG-mapper	1232452.BAIB02000007_gene1615	phage tail	NA
UHGV-0160132_6	Pfam	PF05709	Phage tail protein RIFT-related domain	Sipho_tail
UHGV-0160132_6	NCBIFam	TIGR01633.1	distal tail protein Dit	NA
UHGV-0160132_6	COG	COG4722	Phage-related protein YomH	NA
UHGV-0160132_6	Structural annotation	PF20195, TIGR01633, COG4722	NA	NA
UHGV-0160132_7	PHROG	phrog_1067	minor head protein	head and packaging
UHGV-0160132_7	UniRef90	UniRef90_A0A373N0D4	Prophage_tail domain-containing protein	NA
UHGV-0160132_7	eggNOG-mapper	33035.JPJF01000023_gene3230	Phage minor structural protein	NA
UHGV-0160132_7	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-0160132_7	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-0160132_7	COG	COG4926	Phage-related protein	NA
UHGV-0160132_7	Structural annotation	PF14594, TIGR01665, COG4926	NA	NA
UHGV-0160132_8	KOfam	K21471	cwlO; peptidoglycan DL-endopeptidase CwlO [EC:3.4.-.-]	NA
UHGV-0160132_8	PHROG	phrog_14030	NA	unknown function
UHGV-0160132_8	UniRef90	UniRef90_UPI0013140944	phage tail tip lysozyme	NA
UHGV-0160132_8	eggNOG-mapper	33035.JPJF01000093_gene2240	NlpC/P60 family	NA
UHGV-0160132_8	Pfam	PF18013	Phage tail lysozyme	Phage_lysozyme2
UHGV-0160132_8	Pfam	PF00877	NlpC/P60 family	NLPC_P60
UHGV-0160132_8	COG	COG0791	Cell wall-associated hydrolase, NlpC_P60 family	NA
UHGV-0160132_8	Structural annotation	PF18013, PF05382, NF033742, COG0791	NA	NA
UHGV-0160132_9	PHROG	phrog_24267	NA	unknown function
UHGV-0160132_9	UniRef90	UniRef90_R5HGH3	Phage minor structural protein	NA
UHGV-0160132_9	eggNOG-mapper	526218.Sterm_2930	NA	NA
UHGV-0160132_10	PHROG	phrog_19695	NA	unknown function
UHGV-0160132_10	eggNOG-mapper	411462.DORLON_00772	NA	NA
UHGV-0160132_10	Structural annotation	PF19714	NA	NA
UHGV-0160132_11	PHROG	phrog_28673	tail protein	tail
UHGV-0160132_11	eggNOG-mapper	1540090.A0A0A0RS40_9CAUD	NA	NA
UHGV-0160132_13	PHROG	phrog_199	holin	lysis
UHGV-0160132_13	UniRef90	UniRef90_A0A416ZS05	Holin	NA
UHGV-0160132_13	eggNOG-mapper	411460.RUMTOR_02100	NA	NA
UHGV-0160132_13	Pfam	PF05105	Bacteriophage holin family	Phage_holin_4_1
UHGV-0160132_13	NCBIFam	TIGR01593.1	toxin secretion/phage lysis holin	NA
UHGV-0160132_13	Structural annotation	PF05105, TIGR01593, COG4824	NA	NA
UHGV-0160132_14	PHROG	phrog_15303	NA	unknown function
UHGV-0160132_14	eggNOG-mapper	394503.Ccel_3271	NA	NA
UHGV-0160132_15	PHROG	phrog_14030	NA	unknown function
UHGV-0160132_15	UniRef90	UniRef90_A0A373N0W8	Peptidoglycan-binding protein	NA
UHGV-0160132_15	eggNOG-mapper	742741.HMPREF9475_00446	NA	NA
UHGV-0160132_15	Pfam	PF18013	Phage tail lysozyme	Phage_lysozyme2
UHGV-0160132_15	Pfam	PF01471	Putative peptidoglycan binding domain	PG_binding_1
UHGV-0160132_15	Structural annotation	PF18013, PF01471, COG3409	NA	NA
UHGV-0160132_16	PHROG	phrog_13890	NA	unknown function
UHGV-0160132_16	UniRef90	UniRef90_A0A1Q9J4Y8	HTH cro/C1-type domain-containing protein	NA
UHGV-0160132_16	eggNOG-mapper	411468.CLOSCI_01452	NA	NA
UHGV-0160132_17	KOfam	K14059	int; integrase	NA
UHGV-0160132_17	PHROG	phrog_1	integrase	integration and excision
UHGV-0160132_17	UniRef90	UniRef90_A0A373N009	Site-specific integrase	NA
UHGV-0160132_17	eggNOG-mapper	33035.JPJF01000071_gene4457	Phage integrase family	NA
UHGV-0160132_17	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0160132_17	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0160132_17	Structural annotation	PF00589, PF14659, MF_02055, TIGR02224, COG4974	NA	NA
UHGV-0160132_18	KOfam	K11062	entD; probable enterotoxin D	NA
UHGV-0160132_18	PHROG	phrog_38135	NA	unknown function
UHGV-0160132_18	UniRef90	UniRef90_A0A416ZS49	NA	NA
UHGV-0160132_18	eggNOG-mapper	1280686.AUKE01000005_gene2337	NA	NA
UHGV-0160132_18	Pfam	PF14020	NA	DUF4236
UHGV-0160132_18	Pfam	PF08239	Bacterial SH3 domain	SH3_3
UHGV-0160132_18	Structural annotation	PF14020	NA	NA
UHGV-0160132_20	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0160132_20	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0160132_20	UniRef90	UniRef90_UPI00189E0F3C	helix-turn-helix domain-containing protein	NA
UHGV-0160132_20	eggNOG-mapper	903814.ELI_1263	Helix-turn-helix domain	NA
UHGV-0160132_20	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0160132_20	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0160132_20	Structural annotation	PF01381, MF_00535, NF007257, COG1476	NA	NA
UHGV-0160132_22	PHROG	phrog_36464	NA	unknown function
UHGV-0160132_22	eggNOG-mapper	1235798.C817_05488	NA	NA
UHGV-0160132_24	PHROG	phrog_28508	NA	unknown function
UHGV-0160132_24	Structural annotation	PF19005	NA	NA
UHGV-0160132_27	PHROG	phrog_3584	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0160132_27	eggNOG-mapper	1280698.AUJS01000007_gene1013	NA	NA
UHGV-0160132_27	Structural annotation	PF21578, NF041486	NA	NA
UHGV-0160132_28	UniRef90	UniRef90_A0A373MZB7	RNase H type-1 domain-containing protein	NA
UHGV-0160132_28	eggNOG-mapper	1235800.C819_00514	RNase H	NA
UHGV-0160132_28	Pfam	PF00075	RNase H	RNase_H
UHGV-0160132_28	COG	COG0328	Ribonuclease HI	NA
UHGV-0160132_28	Structural annotation	PF00075, MF_00042, NF001236, COG0328	NA	NA
UHGV-0160132_29	eggNOG-mapper	1235792.C808_00065	NA	NA
UHGV-0160132_30	PHROG	phrog_8470	NA	unknown function
UHGV-0160132_30	UniRef90	UniRef90_UPI001D086F83	PcfJ domain-containing protein	NA
UHGV-0160132_30	eggNOG-mapper	97139.C824_00039	PcfJ-like protein	NA