UHGV-0160189

Genome information

Genome length 42,579 bps

CDS count 58

Completeness 90.89% (high-quality)

geNomad score 0.9767

Prediction confidence Confident

Genome information
Genome ID	UHGV-0160189
vOTU ID	vOTU-008047
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_447337
BioSample	NA
Country	United States
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	90.89% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	18
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9767
Virus hallmark genes (geNomad)	8
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	55.71
Jumbo phage	No

Genome content
Genome length	42,579 bps
GC content	45.64%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	58
CDS density	93.26%
Average CDS length	688.86 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0160189_1	KOfam	K06400	spoIVCA; site-specific DNA recombinase	NA
UHGV-0160189_1	PHROG	phrog_95	integrase	integration and excision
UHGV-0160189_1	UniRef90	UniRef90_UPI00164E9A6A	recombinase family protein	NA
UHGV-0160189_1	eggNOG-mapper	665956.HMPREF1032_01888	NA	NA
UHGV-0160189_1	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-0160189_1	Pfam	PF07508	Recombinase	Recombinase
UHGV-0160189_1	Pfam	PF13408	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
UHGV-0160189_1	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-0160189_1	Structural annotation	PF07508, PF00239, NF041201, COG1961	NA	NA
UHGV-0160189_2	PHROG	phrog_1914	NA	unknown function
UHGV-0160189_2	UniRef90	UniRef90_A0A2V2FH92	Peptidase_M78 domain-containing protein	NA
UHGV-0160189_2	eggNOG-mapper	1160721.RBI_I01604	NA	NA
UHGV-0160189_2	Pfam	PF06114	IrrE N-terminal-like domain	Peptidase_M78
UHGV-0160189_2	COG	COG2856	Zn-dependent peptidase ImmA, M78 family	NA
UHGV-0160189_2	Structural annotation	PF06114, COG2856	NA	NA
UHGV-0160189_4	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0160189_4	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0160189_4	UniRef90	UniRef90_A0A2V2FGH5	HTH cro/C1-type domain-containing protein	NA
UHGV-0160189_4	eggNOG-mapper	246194.CHY_1697	Peptidase S24-like	NA
UHGV-0160189_4	COG	COG1974	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	NA
UHGV-0160189_7	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0160189_7	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0160189_7	UniRef90	UniRef90_UPI000A113527	helix-turn-helix domain-containing protein	NA
UHGV-0160189_7	eggNOG-mapper	97138.C820_00804	sequence-specific DNA binding	NA
UHGV-0160189_7	PADLOC	retron_type_VI_hth_cluster2_1	NA	Retron
UHGV-0160189_7	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0160189_7	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0160189_10	PHROG	phrog_9958	NA	unknown function
UHGV-0160189_10	UniRef90	UniRef90_W0U729	NA	NA
UHGV-0160189_10	eggNOG-mapper	1160721.RBI_I01591	NA	NA
UHGV-0160189_10	Pfam	PF19789	NA	DUF6273
UHGV-0160189_10	Structural annotation	PF19789	NA	NA
UHGV-0160189_11	PHROG	phrog_22695	NA	unknown function
UHGV-0160189_11	eggNOG-mapper	1089548.KI783301_gene2636	NA	NA
UHGV-0160189_12	KOfam	K07465	K07465; putative RecB family exonuclease	NA
UHGV-0160189_12	PHROG	phrog_69	exonuclease	DNA, RNA and nucleotide metabolism
UHGV-0160189_12	UniRef90	UniRef90_A0A2V2FS99	NA	NA
UHGV-0160189_12	eggNOG-mapper	1449126.JQKL01000006_gene838	NA	NA
UHGV-0160189_12	Pfam	PF10926	NA	DUF2800
UHGV-0160189_12	COG	COG2887	RecB family exonuclease	NA
UHGV-0160189_12	Structural annotation	PF10926, MF_03030, TIGR00372, COG2887	NA	NA
UHGV-0160189_14	PHROG	phrog_112	Gp2.5-like ssDNA binding protein and ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0160189_14	UniRef90	UniRef90_A0A2V2FV77	NA	NA
UHGV-0160189_14	eggNOG-mapper	1203606.HMPREF1526_00235	NA	NA
UHGV-0160189_14	Pfam	PF10991	Enterobacter phage Enc34, ssDNA-binding protein	Enc34_ssDNA-bd
UHGV-0160189_14	Structural annotation	PF10991, MF_04153, NF005241	NA	NA
UHGV-0160189_15	KOfam	K02334	dpo; DNA polymerase bacteriophage-type [EC:2.7.7.7]	NA
UHGV-0160189_15	PHROG	phrog_17	DNA polymerase	DNA, RNA and nucleotide metabolism
UHGV-0160189_15	UniRef90	UniRef90_A0A329UVL7	POLAc domain-containing protein	NA
UHGV-0160189_15	eggNOG-mapper	1203606.HMPREF1526_00239	DNA polymerase	NA
UHGV-0160189_15	Pfam	PF00476	DNA polymerase family A	DNA_pol_A
UHGV-0160189_15	COG	COG0749	DNA polymerase I, 3'-5' exonuclease and polymerase domains	NA
UHGV-0160189_15	Structural annotation	PF00476, MF_04101, NF011540, COG0749	NA	NA
UHGV-0160189_17	KOfam	K14415	RTCB, rtcB; tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:6.5.1.8]	NA
UHGV-0160189_17	PHROG	phrog_1075	tRNA splicing ligase	DNA, RNA and nucleotide metabolism
UHGV-0160189_17	UniRef90	UniRef90_A0A3E2XUK5	RNA-splicing ligase RtcB	NA
UHGV-0160189_17	eggNOG-mapper	397290.C810_01387	tRNA-splicing ligase RtcB	NA
UHGV-0160189_17	Pfam	PF01139	tRNA-splicing ligase RtcB	RtcB
UHGV-0160189_17	COG	COG1690	RNA-splicing ligase RtcB, repairs tRNA damage	NA
UHGV-0160189_17	Structural annotation	PF01139, MF_03144, NF007153, COG1690	NA	NA
UHGV-0160189_20	PHROG	phrog_6721	NA	unknown function
UHGV-0160189_20	eggNOG-mapper	428125.CLOLEP_01387	NA	NA
UHGV-0160189_20	Structural annotation	PF02511, MF_01408, TIGR02170, COG1351	NA	NA
UHGV-0160189_22	KOfam	K05925	METTL3; mRNA m6A methyltransferase catalytic subunit [EC:2.1.1.348]	NA
UHGV-0160189_22	PHROG	phrog_359	DNA methyltransferase	other
UHGV-0160189_22	UniRef90	UniRef90_A0A845RJ44	DNA methyltransferase	NA
UHGV-0160189_22	eggNOG-mapper	411468.CLOSCI_01467	Belongs to the MT-A70-like family	NA
UHGV-0160189_22	PADLOC	MTase_II_00048	Type II methyltransferase	RM
UHGV-0160189_22	Pfam	PF05063	MT-A70	MT-A70
UHGV-0160189_22	COG	COG4725	N6-adenosine-specific RNA methylase IME4	NA
UHGV-0160189_22	Structural annotation	PF05063, MF_01872, NF010253, COG4725	NA	NA
UHGV-0160189_23	PHROG	phrog_5781	NA	unknown function
UHGV-0160189_23	UniRef90	UniRef90_A0A2V2FSM6	Nucleoside 2-deoxyribosyltransferase	NA
UHGV-0160189_23	eggNOG-mapper	573061.Clocel_3558	NA	NA
UHGV-0160189_23	Pfam	PF14359	NA	DUF4406
UHGV-0160189_23	COG	COG3613	Nucleoside 2-deoxyribosyltransferase	NA
UHGV-0160189_23	Structural annotation	PF14359, MF_03036, NF007783, COG3613	NA	NA
UHGV-0160189_24	KOfam	K00558	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	NA
UHGV-0160189_24	PHROG	phrog_116	DNA methyltransferase	other
UHGV-0160189_24	UniRef90	UniRef90_A0A6P1TMQ1	DNA (cytosine-5-)-methyltransferase	NA
UHGV-0160189_24	eggNOG-mapper	1216932.CM240_0666	Belongs to the class I-like SAM-binding methyltransferase superfamily. C5-methyltransferase family	NA
UHGV-0160189_24	PADLOC	oMTase_00004	orphan methyltransferase	RM
UHGV-0160189_24	Pfam	PF00145	C-5 cytosine-specific DNA methylase	DNA_methylase
UHGV-0160189_24	COG	COG0270	DNA-cytosine methylase	NA
UHGV-0160189_26	KOfam	K00558	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	NA
UHGV-0160189_26	PHROG	phrog_16528	DNA methyltransferase	other
UHGV-0160189_26	UniRef90	UniRef90_A0A3D5I9W8	DNA (cytosine-5-)-methyltransferase	NA
UHGV-0160189_26	eggNOG-mapper	657322.FPR_26610	DNA (cytosine-5-)-methyltransferase activity	NA
UHGV-0160189_26	Pfam	PF00145	C-5 cytosine-specific DNA methylase	DNA_methylase
UHGV-0160189_26	COG	COG0270	DNA-cytosine methylase	NA
UHGV-0160189_28	PHROG	phrog_256	DNA helicase	DNA, RNA and nucleotide metabolism
UHGV-0160189_28	UniRef90	UniRef90_A0A2V2FYQ5	Virulence-associated protein E	NA
UHGV-0160189_28	eggNOG-mapper	1203606.HMPREF1526_00242	virulence-associated E family protein	NA
UHGV-0160189_28	Pfam	PF05272	Virulence-associated protein E-like domain	VapE-like_dom
UHGV-0160189_28	COG	COG5545	Predicted P-loop ATPase and inactivated derivatives	NA
UHGV-0160189_28	Structural annotation	PF05272, MF_04000, NF005477, NF040562, COG5545	NA	NA
UHGV-0160189_29	PHROG	phrog_93	endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0160189_29	UniRef90	UniRef90_A0A2V2FU35	VRR-NUC domain-containing protein	NA
UHGV-0160189_29	eggNOG-mapper	1262449.CP6013_3186	VRR-NUC domain-containing protein	NA
UHGV-0160189_29	Structural annotation	PF01870, MF_00130, NF002584, COG1591	NA	NA
UHGV-0160189_30	PHROG	phrog_15471	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0160189_30	UniRef90	UniRef90_A0A3G2R437	HNH endonuclease	NA
UHGV-0160189_30	eggNOG-mapper	293826.Amet_4047	HNH endonuclease	NA
UHGV-0160189_30	Pfam	PF13392	HNH endonuclease	HNH_3
UHGV-0160189_30	Structural annotation	PF13392	NA	NA
UHGV-0160189_31	KOfam	K14440	SMARCAL1, HARP; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A-like protein 1 [EC:5.6.2.-]	NA
UHGV-0160189_31	PHROG	phrog_62	DNA helicase	DNA, RNA and nucleotide metabolism
UHGV-0160189_31	UniRef90	UniRef90_A0A2V2FWS9	DEAD/DEAH box helicase	NA
UHGV-0160189_31	eggNOG-mapper	86416.Clopa_0567	snf2 family	NA
UHGV-0160189_31	PADLOC	DpdE_00010	DpdE	DPD
UHGV-0160189_31	Pfam	PF00176	SNF2-related domain	SNF2-rel_dom
UHGV-0160189_31	COG	COG0553	Superfamily II DNA or RNA helicase, SNF2 family	NA
UHGV-0160189_31	Structural annotation	PF13872, PF16203, MF_01821, NF041790, COG0553	NA	NA
UHGV-0160189_32	PHROG	phrog_606	terminase small subunit	head and packaging
UHGV-0160189_32	UniRef90	UniRef90_UPI001D08D6B6	DNA-packaging protein	NA
UHGV-0160189_32	eggNOG-mapper	877421.AUJT01000054_gene66	NA	NA
UHGV-0160189_32	Pfam	PF16677	DNA-packaging protein gp3	GP3_package
UHGV-0160189_32	Structural annotation	PF16677	NA	NA
UHGV-0160189_33	PHROG	phrog_4534	NA	unknown function
UHGV-0160189_34	KOfam	K06400	spoIVCA; site-specific DNA recombinase	NA
UHGV-0160189_34	PHROG	phrog_95	integrase	integration and excision
UHGV-0160189_34	UniRef90	UniRef90_E6UJR7	Resolvase domain	NA
UHGV-0160189_34	eggNOG-mapper	697329.Rumal_3466	resolvase	NA
UHGV-0160189_34	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-0160189_34	Pfam	PF07508	Recombinase	Recombinase
UHGV-0160189_34	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-0160189_34	Structural annotation	PF00239, PF07508, NF041201, COG1961	NA	NA
UHGV-0160189_36	PHROG	phrog_1233	NA	unknown function
UHGV-0160189_36	UniRef90	UniRef90_UPI001C39EFB9	Dienelactone hydrolase family protein	NA
UHGV-0160189_36	eggNOG-mapper	357809.Cphy_2967	NA	NA
UHGV-0160189_37	PHROG	phrog_38	terminase large subunit	head and packaging
UHGV-0160189_37	UniRef90	UniRef90_A0A318EQM2	Putative phage terminase large subunit-like protein	NA
UHGV-0160189_37	eggNOG-mapper	1123263.AUKY01000015_gene1608	chromosome segregation	NA
UHGV-0160189_37	COG	COG5410	NA	NA
UHGV-0160189_37	Structural annotation	PF17289, PF02562, MF_04147, NF033889, COG5362, COG5410	NA	NA
UHGV-0160189_38	PHROG	phrog_64	portal protein	head and packaging
UHGV-0160189_38	UniRef90	UniRef90_A0A414B012	Phage portal protein	NA
UHGV-0160189_38	eggNOG-mapper	1121866.AUGK01000003_gene1429	Phage portal protein, SPP1 Gp6-like	NA
UHGV-0160189_38	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0160189_38	Structural annotation	PF05133, MF_04120, TIGR01538, COG5511	NA	NA
UHGV-0160189_39	PHROG	phrog_115	minor head protein	head and packaging
UHGV-0160189_39	UniRef90	UniRef90_A0A1C5WCC8	Phage head morphogenesis protein, SPP1 gp7 family	NA
UHGV-0160189_39	Pfam	PF04233	Phage Mu protein F like protein	Phage_Mu_F
UHGV-0160189_39	NCBIFam	TIGR01641.1	minor capsid protein	NA
UHGV-0160189_39	COG	COG2369	NA	NA
UHGV-0160189_39	Structural annotation	PF04233, TIGR01641, COG2369	NA	NA
UHGV-0160189_42	PHROG	phrog_1328	major head protein	head and packaging
UHGV-0160189_42	UniRef90	UniRef90_UPI00164DD2D5	NA	NA
UHGV-0160189_42	eggNOG-mapper	665956.HMPREF1032_03619	NA	NA
UHGV-0160189_42	Pfam	PF17236	NA	DUF5309
UHGV-0160189_42	Structural annotation	PF17236, MF_04119, NF041162, COG4653	NA	NA
UHGV-0160189_43	UniRef90	UniRef90_R6N215	Phage QLRG family putative DNA packaging	NA
UHGV-0160189_43	eggNOG-mapper	1298920.KI911353_gene2658	NA	NA
UHGV-0160189_43	Pfam	PF05135	Phage gp6-like head-tail connector protein	Phage_connect_1
UHGV-0160189_43	Structural annotation	TIGR01560	NA	NA
UHGV-0160189_44	eggNOG-mapper	1121866.AUGK01000003_gene1432	NA	NA
UHGV-0160189_46	Structural annotation	PF06141, TIGR02367, COG3167	NA	NA
UHGV-0160189_47	PHROG	phrog_158	major tail protein	tail
UHGV-0160189_47	UniRef90	UniRef90_D7GNW1	Phage tail protein	NA
UHGV-0160189_47	eggNOG-mapper	1232453.BAIF02000058_gene1634	NA	NA
UHGV-0160189_47	Structural annotation	PF16463, TIGR02241, COG5437	NA	NA
UHGV-0160189_48	UniRef90	UniRef90_A0A847YX95	NA	NA
UHGV-0160189_48	eggNOG-mapper	1211844.CBLM010000023_gene988	NA	NA
UHGV-0160189_48	Pfam	PF16478	NA	DUF5055
UHGV-0160189_48	Structural annotation	PF16478	NA	NA
UHGV-0160189_49	eggNOG-mapper	1121333.JMLH01000047_gene1011	NA	NA
UHGV-0160189_50	PHROG	phrog_28918	NA	unknown function
UHGV-0160189_50	eggNOG-mapper	1121866.AUGK01000003_gene1437	phage tail tape measure protein	NA
UHGV-0160189_50	COG	COG1280	Threonine/homoserine/homoserine lactone efflux protein	NA
UHGV-0160189_50	Structural annotation	PF09325	NA	NA
UHGV-0160189_51	PHROG	phrog_1194	NA	unknown function
UHGV-0160189_51	eggNOG-mapper	1400520.LFAB_05290	NA	NA
UHGV-0160189_51	Pfam	PF20458	NA	DUF6711
UHGV-0160189_51	Structural annotation	PF20458, TIGR02126, COG3499	NA	NA
UHGV-0160189_52	PHROG	phrog_6616	tail protein	tail
UHGV-0160189_52	eggNOG-mapper	445971.ANASTE_00088	NA	NA
UHGV-0160189_52	Pfam	PF13884	Chaperone of endosialidase	Peptidase_S74
UHGV-0160189_52	Structural annotation	PF05113, NF033848, COG3500	NA	NA
UHGV-0160189_56	PHROG	phrog_1863	NA	unknown function
UHGV-0160189_56	eggNOG-mapper	718252.FP2_04900	NA	NA
UHGV-0160189_57	KOfam	K19304	mepM; murein DD-endopeptidase [EC:3.4.24.-]	NA
UHGV-0160189_57	PHROG	phrog_7767	metallo-endopeptidase	other
UHGV-0160189_57	UniRef90	UniRef90_UPI0010652D18	M23 family metallopeptidase	NA
UHGV-0160189_57	eggNOG-mapper	665956.HMPREF1032_00102	heme binding	NA
UHGV-0160189_57	Pfam	PF04531	Bacteriophage holin	Phage_holin_1
UHGV-0160189_57	Pfam	PF01551	Peptidase family M23	Peptidase_M23
UHGV-0160189_57	Pfam	PF08239	Bacterial SH3 domain	SH3_3
UHGV-0160189_57	NCBIFam	TIGR01598.1	phage holin	NA
UHGV-0160189_57	COG	COG0739	Murein DD-endopeptidase MepM and murein hydrolase activator NlpD, contains LysM domain	NA
UHGV-0160189_57	Structural annotation	PF04531, COG5546, COG3942	NA	NA