UHGV-0160190

Genome information

Genome length 39,568 bps

CDS count 57

Completeness 79.66% (medium-quality)

geNomad score 0.9790

Prediction confidence Confident

Genome information
Genome ID	UHGV-0160190
vOTU ID	vOTU-015423
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_447330
BioSample	SAMN05971426
Country	United States
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	79.66% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	Yes
CheckV viral markers	17
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9790
Virus hallmark genes (geNomad)	16
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	34.23
Jumbo phage	No

Genome content
Genome length	39,568 bps
GC content	44.23%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	57
CDS density	93.93%
Average CDS length	658.58 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0160190_1	KOfam	K19354	waaH; heptose III glucuronosyltransferase [EC:2.4.1.-]	NA
UHGV-0160190_1	PHROG	phrog_841	GtrB-like O-antigen conversion	moron, auxiliary metabolic gene and host takeover
UHGV-0160190_1	UniRef90	UniRef90_A0A0M6WFX2	Chondroitin polymerase	NA
UHGV-0160190_1	eggNOG-mapper	140626.JHWB01000013_gene393	NA	NA
UHGV-0160190_1	Pfam	PF00535	Glycosyl transferase family 2	Glycos_transf_2
UHGV-0160190_1	COG	COG0463	Glycosyltransferase involved in cell wall bisynthesis	NA
UHGV-0160190_2	KOfam	K01447	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0160190_2	PHROG	phrog_670	endolysin	lysis
UHGV-0160190_2	UniRef90	UniRef90_UPI00192054C9	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0160190_2	eggNOG-mapper	1235802.C823_05611	Ami_2	NA
UHGV-0160190_2	Pfam	PF01510	N-acetylmuramoyl-L-alanine amidase	Amidase_2
UHGV-0160190_2	COG	COG5632	N-acetylmuramoyl-L-alanine amidase CwlA	NA
UHGV-0160190_2	Structural annotation	PF01510, MF_04111, NF008758, COG5632	NA	NA
UHGV-0160190_3	PHROG	phrog_199	holin	lysis
UHGV-0160190_3	UniRef90	UniRef90_UPI0019247BD1	phage holin family protein	NA
UHGV-0160190_3	eggNOG-mapper	742740.HMPREF9474_02333	Bacteriophage holin family	NA
UHGV-0160190_3	Pfam	PF05105	Bacteriophage holin family	Phage_holin_4_1
UHGV-0160190_3	NCBIFam	TIGR01593.1	toxin secretion/phage lysis holin	NA
UHGV-0160190_3	COG	COG4824	Phage-related holin (Lysis protein)	NA
UHGV-0160190_3	Structural annotation	PF05105, TIGR01593, COG4824	NA	NA
UHGV-0160190_5	PHROG	phrog_134	NA	unknown function
UHGV-0160190_5	UniRef90	UniRef90_A0A3D5LSW1	XkdX family protein	NA
UHGV-0160190_5	eggNOG-mapper	411468.CLOSCI_01507	Phage uncharacterised protein (Phage_XkdX)	NA
UHGV-0160190_5	Pfam	PF09693	Phage uncharacterised protein (Phage_XkdX)	Phage_XkdX
UHGV-0160190_5	Structural annotation	PF09693, TIGR01669	NA	NA
UHGV-0160190_6	PHROG	phrog_20201	NA	unknown function
UHGV-0160190_7	KOfam	K00986	ltrA; RNA-directed DNA polymerase [EC:2.7.7.49]	NA
UHGV-0160190_7	PHROG	phrog_1423	Reverse transcriptase	DNA, RNA and nucleotide metabolism
UHGV-0160190_7	UniRef90	UniRef90_UPI001922BC3D	RNA-directed DNA polymerase	NA
UHGV-0160190_7	eggNOG-mapper	411468.CLOSCI_01505	Reverse transcriptase (RNA-dependent DNA polymerase)	NA
UHGV-0160190_7	PADLOC	icity0040	RT (reverse transcriptase)	CRISPR-CAS
UHGV-0160190_7	Pfam	PF00078	Reverse transcriptase (RNA-dependent DNA polymerase)	RVT_1
UHGV-0160190_7	COG	COG3344	Retron-type reverse transcriptase	NA
UHGV-0160190_7	Structural annotation	PF00078, MF_01390, TIGR04416, COG3344	NA	NA
UHGV-0160190_8	PHROG	phrog_5302	tail protein	tail
UHGV-0160190_8	eggNOG-mapper	742741.HMPREF9475_00438	NA	NA
UHGV-0160190_8	Structural annotation	COG1262	NA	NA
UHGV-0160190_9	PHROG	phrog_7037	tail fiber protein	tail
UHGV-0160190_9	UniRef90	UniRef90_UPI001920BCE5	phage tail protein	NA
UHGV-0160190_9	eggNOG-mapper	97139.C824_03361	tail collar domain protein	NA
UHGV-0160190_9	Pfam	PF12571	Phage tail-collar fibre protein	DUF3751
UHGV-0160190_9	COG	COG5301	Phage-related tail fiber protein	NA
UHGV-0160190_9	Structural annotation	PF12571	NA	NA
UHGV-0160190_10	PHROG	phrog_14404	baseplate protein	tail
UHGV-0160190_10	UniRef90	UniRef90_UPI001A9B5483	phage tail protein	NA
UHGV-0160190_10	eggNOG-mapper	1232443.BAIA02000135_gene1411	Phage tail protein (Tail_P2_I)	NA
UHGV-0160190_10	Pfam	PF09684	Phage tail protein (Tail_P2_I)	Tail_P2_I
UHGV-0160190_10	COG	COG4385	Bacteriophage P2-related tail formation protein	NA
UHGV-0160190_11	PHROG	phrog_6	baseplate protein	tail
UHGV-0160190_11	UniRef90	UniRef90_UPI0019220C63	baseplate J/gp47 family protein	NA
UHGV-0160190_11	eggNOG-mapper	1235793.C809_02678	Baseplate J-like protein	NA
UHGV-0160190_11	Pfam	PF04865	Baseplate J-like protein	Baseplate_J
UHGV-0160190_11	COG	COG3948	Phage-related baseplate assembly protein	NA
UHGV-0160190_11	Structural annotation	PF04865, PF21379, MF_04102, TIGR02243, COG3948	NA	NA
UHGV-0160190_12	eggNOG-mapper	1235835.C814_01196	GPW Gp25 family protein	NA
UHGV-0160190_12	COG	COG3628	Phage baseplate assembly protein W	NA
UHGV-0160190_12	Structural annotation	PF04965, TIGR03357, COG3628	NA	NA
UHGV-0160190_13	KOfam	K22409	sle1; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0160190_13	PHROG	phrog_380	endolysin	lysis
UHGV-0160190_13	UniRef90	UniRef90_A0A7U9X0W9	LysM domain-containing protein	NA
UHGV-0160190_13	eggNOG-mapper	203119.Cthe_2489	Lysin motif	NA
UHGV-0160190_13	Pfam	PF06995	Phage P2 GpU	Phage_P2_GpU
UHGV-0160190_13	Pfam	PF01476	LysM domain	LysM
UHGV-0160190_13	COG	COG1652	Cytoplasmic potassium-binding protein Kbp/XkdP/YgaU, contains LysM domain	NA
UHGV-0160190_13	Structural annotation	PF06995, PF05489, MF_02014, TIGR01633, NF010723, COG3499, COG1388	NA	NA
UHGV-0160190_14	UniRef90	UniRef90_A0A5D4SWX9	Phage baseplate assembly protein V	NA
UHGV-0160190_14	COG	COG4540	Phage P2 baseplate assembly protein gpV	NA
UHGV-0160190_14	Structural annotation	PF05606, MF_00075, TIGR01644, COG4540	NA	NA
UHGV-0160190_15	KOfam	K06905	NA	NA
UHGV-0160190_15	PHROG	phrog_52	tail protein	tail
UHGV-0160190_15	UniRef90	UniRef90_A0A3A8UY07	LysM peptidoglycan-binding domain-containing protein	NA
UHGV-0160190_15	eggNOG-mapper	1235793.C809_02674	Lysin motif	NA
UHGV-0160190_15	COG	COG3500	NA	NA
UHGV-0160190_15	Structural annotation	PF14594, NF033848, COG3500	NA	NA
UHGV-0160190_16	UniRef90	UniRef90_UPI001922276B	phage tail protein	NA
UHGV-0160190_16	eggNOG-mapper	484770.UFO1_1709	Phage Tail Protein X	NA
UHGV-0160190_16	COG	COG5004	P2-like prophage tail protein X	NA
UHGV-0160190_16	Structural annotation	PF05489, TIGR02899, COG5004	NA	NA
UHGV-0160190_17	PHROG	phrog_19074	NA	unknown function
UHGV-0160190_17	UniRef90	UniRef90_UPI0019206AC0	phage tail tape measure protein	NA
UHGV-0160190_17	eggNOG-mapper	887325.HMPREF0381_0396	Phage-related minor tail protein	NA
UHGV-0160190_17	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-0160190_17	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-0160190_17	COG	COG5283	Phage-related tail protein	NA
UHGV-0160190_17	Structural annotation	PF10145, TIGR01760, COG5280	NA	NA
UHGV-0160190_18	PHROG	phrog_3140	tail assembly chaperone	tail
UHGV-0160190_18	UniRef90	UniRef90_UPI000EF4961B	phage tail assembly protein	NA
UHGV-0160190_18	eggNOG-mapper	887325.HMPREF0381_0395	Phage tail assembly chaperone proteins, E, or 41 or 14	NA
UHGV-0160190_18	Structural annotation	PF10109	NA	NA
UHGV-0160190_19	KOfam	K06908	NA	NA
UHGV-0160190_19	PHROG	phrog_55	head closure	connector
UHGV-0160190_19	UniRef90	UniRef90_UPI0019237CCA	phage major tail tube protein	NA
UHGV-0160190_19	eggNOG-mapper	399741.Spro_4913	major tail tube protein	NA
UHGV-0160190_19	Pfam	PF04985	Phage tail tube protein FII	Phage_tube
UHGV-0160190_19	COG	COG3498	Phage tail tube protein FII	NA
UHGV-0160190_19	Structural annotation	PF04985, TIGR01611, COG3498	NA	NA
UHGV-0160190_20	PHROG	phrog_23	tail sheath	tail
UHGV-0160190_20	UniRef90	UniRef90_A0A7U9RTU3	Putative prophage major tail sheath protein	NA
UHGV-0160190_20	eggNOG-mapper	1235793.C809_02669	Phage tail sheath protein subtilisin-like domain	NA
UHGV-0160190_20	COG	COG3497	Phage tail sheath protein FI	NA
UHGV-0160190_20	Structural annotation	PF10758, TIGR03355, COG3497	NA	NA
UHGV-0160190_22	PHROG	phrog_2581	virion structural protein	head and packaging
UHGV-0160190_22	eggNOG-mapper	1235793.C809_02667	NA	NA
UHGV-0160190_22	Structural annotation	PF09646, COG5003	NA	NA
UHGV-0160190_23	PHROG	phrog_27	tail completion or Neck1 protein	connector
UHGV-0160190_23	UniRef90	UniRef90_UPI0018995B39	phage tail protein	NA
UHGV-0160190_23	eggNOG-mapper	1235793.C809_02666	Prophage minor tail protein Z (GPZ)	NA
UHGV-0160190_23	Structural annotation	PF06763	NA	NA
UHGV-0160190_24	PHROG	phrog_2551	minor tail protein	tail
UHGV-0160190_24	eggNOG-mapper	634994.GCWU000323_00561	NA	NA
UHGV-0160190_24	Structural annotation	PF13856	NA	NA
UHGV-0160190_26	PHROG	phrog_29	major head protein	head and packaging
UHGV-0160190_26	UniRef90	UniRef90_UPI0019233712	major capsid protein	NA
UHGV-0160190_26	eggNOG-mapper	445972.ANACOL_03362	Phage major capsid protein E	NA
UHGV-0160190_26	Pfam	PF03864	Phage major capsid protein E	Phage_cap_E
UHGV-0160190_26	Structural annotation	PF03864, MF_04133, TIGR04387, COG4653	NA	NA
UHGV-0160190_27	Structural annotation	PF02924	NA	NA
UHGV-0160190_28	KOfam	K01358	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	NA
UHGV-0160190_28	PHROG	phrog_94	head maturation protease	head and packaging
UHGV-0160190_28	UniRef90	UniRef90_UPI0019228D84	Clp protease ClpP	NA
UHGV-0160190_28	eggNOG-mapper	649639.Bcell_2731	Serine dehydrogenase proteinase	NA
UHGV-0160190_28	Pfam	PF00574	Clp protease	CLP_protease
UHGV-0160190_28	COG	COG0740	ATP-dependent protease ClpP, protease subunit	NA
UHGV-0160190_28	Structural annotation	PF00574, MF_00444, TIGR00493, COG0740	NA	NA
UHGV-0160190_29	PHROG	phrog_21	portal protein	head and packaging
UHGV-0160190_29	UniRef90	UniRef90_UPI0019242660	phage portal protein	NA
UHGV-0160190_29	eggNOG-mapper	857293.CAAU_0797	Phage portal protein, lambda family	NA
UHGV-0160190_29	Pfam	PF05136	Phage portal protein, lambda family	Phage_portal_2
UHGV-0160190_29	NCBIFam	TIGR01539.1	phage portal protein	NA
UHGV-0160190_29	COG	COG5511	Phage capsid protein	NA
UHGV-0160190_29	Structural annotation	PF05136, MF_04135, TIGR01539, COG5511	NA	NA
UHGV-0160190_30	PHROG	phrog_118	head-tail adaptor	connector
UHGV-0160190_30	Structural annotation	PF19645	NA	NA
UHGV-0160190_31	KOfam	K21512	gpA; terminase, large subunit [EC:3.1.21.4]	NA
UHGV-0160190_31	PHROG	phrog_15	terminase large subunit	head and packaging
UHGV-0160190_31	UniRef90	UniRef90_UPI001922D64E	phage terminase large subunit family protein	NA
UHGV-0160190_31	eggNOG-mapper	1235793.C809_02658	Phage terminase large subunit (GpA)	NA
UHGV-0160190_31	Pfam	PF05876	Phage terminase large subunit gpA, ATPase domain	GpA_ATPase
UHGV-0160190_31	Pfam	PF20454	Terminase large subunit gpA, endonuclease domain	GpA_nuclease
UHGV-0160190_31	COG	COG5525	Phage terminase, large subunit GpA	NA
UHGV-0160190_31	HAMAP	MF_04144	Terminase, large subunit	NA
UHGV-0160190_31	Structural annotation	PF05876, PF20454, MF_04144, TIGR01547, COG5525	NA	NA
UHGV-0160190_32	KOfam	K22014	Nu1, Noh; terminase small subunit / prophage DNA-packing protein	NA
UHGV-0160190_32	PHROG	phrog_57	terminase small subunit	head and packaging
UHGV-0160190_32	UniRef90	UniRef90_A0A1M7YBS6	Phage DNA packaging protein, Nu1 subunit of terminase	NA
UHGV-0160190_32	eggNOG-mapper	1235793.C809_02657	NA	NA
UHGV-0160190_32	COG	COG4220	Phage DNA packaging protein, Nu1 subunit of terminase	NA
UHGV-0160190_32	Structural annotation	PF07471, NF040990, COG4220	NA	NA
UHGV-0160190_33	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0160190_33	UniRef90	UniRef90_A0A174KVR7	ECF subfamily RNA polymerase sigma-24 subunit	NA
UHGV-0160190_33	eggNOG-mapper	397290.C810_01391	NA	NA
UHGV-0160190_34	PHROG	phrog_4292	NA	unknown function
UHGV-0160190_35	PHROG	phrog_986	RNA-binding protein	DNA, RNA and nucleotide metabolism
UHGV-0160190_35	UniRef90	UniRef90_A0A413YTK1	NA	NA
UHGV-0160190_35	eggNOG-mapper	1499683.CCFF01000005_gene42	NA	NA
UHGV-0160190_35	Pfam	PF12961	NA	DUF3850
UHGV-0160190_35	Structural annotation	PF12961, MF_00684, NF003443, COG4043	NA	NA
UHGV-0160190_36	PHROG	phrog_15198	NA	unknown function
UHGV-0160190_36	UniRef90	UniRef90_UPI00156ED5AF	NA	NA
UHGV-0160190_36	eggNOG-mapper	1256908.HMPREF0373_00667	NA	NA
UHGV-0160190_36	Pfam	PF04448	NA	DUF551
UHGV-0160190_36	Structural annotation	NF041588	NA	NA
UHGV-0160190_37	KOfam	K01154	hsdS; type I restriction enzyme, S subunit [EC:3.1.21.3]	NA
UHGV-0160190_37	PHROG	phrog_2668	NA	unknown function
UHGV-0160190_37	UniRef90	UniRef90_UPI001923DEFA	restriction endonuclease subunit S	NA
UHGV-0160190_37	eggNOG-mapper	592010.GCWU000182_001449	Type I restriction modification DNA specificity domain	NA
UHGV-0160190_37	PADLOC	Specificity_I_00114	Type I specificity subunit	RM
UHGV-0160190_37	Pfam	PF01420	Type I restriction modification DNA specificity domain	Methylase_S
UHGV-0160190_37	Structural annotation	PF01420, COG0732	NA	NA
UHGV-0160190_38	KOfam	K03427	hsdM; type I restriction enzyme M protein [EC:2.1.1.72]	NA
UHGV-0160190_38	PHROG	phrog_6380	DNA methyltransferase	other
UHGV-0160190_38	UniRef90	UniRef90_UPI001898C2C6	N-6 DNA methylase	NA
UHGV-0160190_38	eggNOG-mapper	592010.GCWU000182_001448	HsdM N-terminal domain	NA
UHGV-0160190_38	PADLOC	MTase_I_00005	Type I methyltransferase	RM
UHGV-0160190_38	Pfam	PF02384	N-6 DNA Methylase	N6_Mtase
UHGV-0160190_38	COG	COG0286	Type I restriction-modification system, DNA methylase subunit	NA
UHGV-0160190_38	Structural annotation	PF02384, MF_01872, TIGR00497, COG0286	NA	NA
UHGV-0160190_40	UniRef90	UniRef90_UPI001922D167	NA	NA
UHGV-0160190_40	eggNOG-mapper	641107.CDLVIII_5155	NA	NA
UHGV-0160190_40	Pfam	PF14199	NA	DUF4317
UHGV-0160190_40	Structural annotation	PF14199, MF_00730, NF001557, COG3081	NA	NA
UHGV-0160190_41	PHROG	phrog_7566	NA	unknown function
UHGV-0160190_41	eggNOG-mapper	483218.BACPEC_01171	NA	NA
UHGV-0160190_43	PHROG	phrog_15077	NA	unknown function
UHGV-0160190_43	UniRef90	UniRef90_UPI0019165AFE	NA	NA
UHGV-0160190_43	eggNOG-mapper	1235792.C808_00069	NA	NA
UHGV-0160190_43	Structural annotation	PF11300, NF038070	NA	NA
UHGV-0160190_44	PHROG	phrog_8470	NA	unknown function
UHGV-0160190_44	UniRef90	UniRef90_UPI001920BF2D	PcfJ domain-containing protein	NA
UHGV-0160190_44	eggNOG-mapper	610130.Closa_1108	PcfJ-like protein	NA
UHGV-0160190_44	Pfam	PF14284	PcfJ-like protein	PcfJ
UHGV-0160190_44	Structural annotation	PF14284	NA	NA
UHGV-0160190_45	eggNOG-mapper	1235792.C808_00065	NA	NA
UHGV-0160190_46	KOfam	K03469	rnhA, RNASEH1; ribonuclease HI [EC:3.1.26.4]	NA
UHGV-0160190_46	PHROG	phrog_531	Rnase H	DNA, RNA and nucleotide metabolism
UHGV-0160190_46	UniRef90	UniRef90_UPI000497DE73	ribonuclease HI	NA
UHGV-0160190_46	eggNOG-mapper	1037409.BJ6T_13660	Endonuclease that specifically degrades the RNA of RNA- DNA hybrids	NA
UHGV-0160190_46	Pfam	PF00075	RNase H	RNase_H
UHGV-0160190_46	COG	COG0328	Ribonuclease HI	NA
UHGV-0160190_46	Structural annotation	PF00075, MF_00042, NF001236, COG0328	NA	NA
UHGV-0160190_47	PHROG	phrog_3584	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0160190_47	eggNOG-mapper	1235800.C819_02258	NA	NA
UHGV-0160190_51	PHROG	phrog_6058	NA	unknown function
UHGV-0160190_51	UniRef90	UniRef90_A0A416Z3U8	Helix-turn-helix domain-containing protein	NA
UHGV-0160190_51	Structural annotation	PF12728, NF033787	NA	NA
UHGV-0160190_53	PHROG	phrog_13590	kinase	other
UHGV-0160190_53	eggNOG-mapper	207559.Dde_3428	NA	NA
UHGV-0160190_55	UniRef90	UniRef90_A0A806LWA7	SWIM-type domain-containing protein	NA
UHGV-0160190_55	eggNOG-mapper	1145276.T479_12645	SWIM zinc finger	NA
UHGV-0160190_55	Pfam	PF04434	SWIM zinc finger	SWIM