UHGV-0160195

Genome information

Genome length 37,195 bps

CDS count 56

Completeness 99.90% (high-quality)

geNomad score 0.9792

Prediction confidence Confident

Genome information
Genome ID	UHGV-0160195
vOTU ID	vOTU-010693
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_459310
BioSample	SAMN05971711
Country	United States
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	99.90% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	18
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9792
Virus hallmark genes (geNomad)	10
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	74.34
Jumbo phage	No

Genome content
Genome length	37,195 bps
GC content	40.69%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	56
CDS density	90.23%
Average CDS length	602.20 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0160195_1	KOfam	K06400	spoIVCA; site-specific DNA recombinase	NA
UHGV-0160195_1	PHROG	phrog_95	integrase	integration and excision
UHGV-0160195_1	UniRef90	UniRef90_UPI00156F85ED	recombinase family protein	NA
UHGV-0160195_1	eggNOG-mapper	1235799.C818_04182	Resolvase, N terminal domain	NA
UHGV-0160195_1	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-0160195_1	Pfam	PF13408	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
UHGV-0160195_1	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-0160195_1	Structural annotation	PF00239, NF041201, COG1961	NA	NA
UHGV-0160195_2	UniRef90	UniRef90_A0A0D1BYU2	SAP domain-containing protein	NA
UHGV-0160195_2	eggNOG-mapper	1304866.K413DRAFT_1250	Putative DNA-binding (bihelical) motif predicted to be involved in chromosomal organisation	NA
UHGV-0160195_2	Pfam	PF02037	SAP domain	SAP
UHGV-0160195_3	KOfam	K23779	sutR; XRE family transcriptional regulator, regulator of sulfur utilization	NA
UHGV-0160195_3	UniRef90	UniRef90_UPI00156E6C7A	helix-turn-helix domain-containing protein	NA
UHGV-0160195_3	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0160195_3	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0160195_5	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0160195_5	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0160195_5	UniRef90	UniRef90_UPI00156FE30C	helix-turn-helix transcriptional regulator	NA
UHGV-0160195_5	eggNOG-mapper	1280698.AUJS01000007_gene1002	Helix-turn-helix XRE-family like proteins	NA
UHGV-0160195_5	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0160195_5	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0160195_5	Structural annotation	PF01381, MF_00535, NF041951, COG1476	NA	NA
UHGV-0160195_9	KOfam	K07741	antB; anti-repressor protein	NA
UHGV-0160195_9	PHROG	phrog_63	anti-repressor Ant	transcription regulation
UHGV-0160195_9	UniRef90	UniRef90_UPI001D085171	phage antirepressor KilAC domain-containing protein	NA
UHGV-0160195_9	eggNOG-mapper	411470.RUMGNA_02184	Phage antirepressor protein	NA
UHGV-0160195_9	Pfam	PF08346	AntA/AntB antirepressor	AntA
UHGV-0160195_9	Pfam	PF03374	Phage antirepressor protein KilAC domain	ANT
UHGV-0160195_9	COG	COG3561	Phage anti-repressor protein Ant	NA
UHGV-0160195_9	Structural annotation	PF03374, PF08346, TIGR02681, COG3645, COG3561	NA	NA
UHGV-0160195_13	eggNOG-mapper	411462.DORLON_00814	NA	NA
UHGV-0160195_14	PHROG	phrog_3777	NA	unknown function
UHGV-0160195_14	UniRef90	UniRef90_A0A6L8RVX0	NA	NA
UHGV-0160195_14	eggNOG-mapper	411462.DORLON_00813	NA	NA
UHGV-0160195_14	Pfam	PF12957	NA	DUF3846
UHGV-0160195_14	Structural annotation	PF12957	NA	NA
UHGV-0160195_15	UniRef90	UniRef90_R6RDX0	Arginyl-tRNA synthetase	NA
UHGV-0160195_16	PHROG	phrog_253	Mu Gam-like end protection	DNA, RNA and nucleotide metabolism
UHGV-0160195_16	UniRef90	UniRef90_A0A564SBZ1	Siphovirus Gp157	NA
UHGV-0160195_16	eggNOG-mapper	1256908.HMPREF0373_00657	Siphovirus Gp157	NA
UHGV-0160195_16	Pfam	PF05565	Siphovirus Gp157	Sipho_Gp157
UHGV-0160195_16	Structural annotation	PF05565, NF002139	NA	NA
UHGV-0160195_17	Structural annotation	PF14902	NA	NA
UHGV-0160195_18	PHROG	phrog_2872	Sak4-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0160195_18	UniRef90	UniRef90_UPI001D06DB67	ATP-binding protein	NA
UHGV-0160195_18	eggNOG-mapper	1304866.K413DRAFT_0827	AAA domain	NA
UHGV-0160195_18	Pfam	PF13479	AAA domain	AAA_24
UHGV-0160195_18	Structural annotation	PF13479, MF_00350, TIGR01618, COG0468	NA	NA
UHGV-0160195_19	PHROG	phrog_18107	NA	unknown function
UHGV-0160195_19	eggNOG-mapper	1256908.HMPREF0373_00659	NA	NA
UHGV-0160195_19	Structural annotation	PF05037	NA	NA
UHGV-0160195_20	PHROG	phrog_3490	ERCC4-type nuclease	DNA, RNA and nucleotide metabolism
UHGV-0160195_20	UniRef90	UniRef90_A0A391NZM9	ERCC4 domain-containing protein	NA
UHGV-0160195_20	eggNOG-mapper	1256908.HMPREF0373_00660	NA	NA
UHGV-0160195_20	Pfam	PF02732	ERCC4 domain	ERCC4
UHGV-0160195_20	Structural annotation	PF03834, NF040956, COG1948	NA	NA
UHGV-0160195_21	KOfam	K02316	dnaG; DNA primase [EC:2.7.7.101]	NA
UHGV-0160195_21	PHROG	phrog_11992	NA	unknown function
UHGV-0160195_21	UniRef90	UniRef90_A0A6L8RVS7	DNA primase	NA
UHGV-0160195_21	eggNOG-mapper	397290.C810_05175	CHC2 zinc finger	NA
UHGV-0160195_21	PADLOC	drt-UG29	DRT	DRT
UHGV-0160195_21	Pfam	PF01807	CHC2 zinc finger	zf-CHC2
UHGV-0160195_21	COG	COG0358	DNA primase (bacterial type)	NA
UHGV-0160195_21	Structural annotation	PF01807	NA	NA
UHGV-0160195_22	PHROG	phrog_8841	DNA primase/helicase	DNA, RNA and nucleotide metabolism
UHGV-0160195_22	UniRef90	UniRef90_A0A6N9JUH3	NA	NA
UHGV-0160195_22	eggNOG-mapper	476272.RUMHYD_01742	NA	NA
UHGV-0160195_22	Pfam	PF06048	NA	DUF927
UHGV-0160195_22	Pfam	PF18662	Cch helix turn helix domain	HTH_56
UHGV-0160195_22	COG	COG5519	NA	NA
UHGV-0160195_22	Structural annotation	PF06048, PF18662, MF_00016, NF011296, COG5519	NA	NA
UHGV-0160195_24	PHROG	phrog_15077	NA	unknown function
UHGV-0160195_24	UniRef90	UniRef90_A0A1M6RQ18	RNA polymerase, alpha chain C terminal domain	NA
UHGV-0160195_24	eggNOG-mapper	742765.HMPREF9457_02110	NA	NA
UHGV-0160195_24	Structural annotation	NF038070	NA	NA
UHGV-0160195_25	PHROG	phrog_15198	NA	unknown function
UHGV-0160195_25	UniRef90	UniRef90_UPI001EE0C335	NA	NA
UHGV-0160195_25	eggNOG-mapper	411462.DORLON_00804	NA	NA
UHGV-0160195_25	Pfam	PF04448	NA	DUF551
UHGV-0160195_25	Structural annotation	PF04448, NF041588	NA	NA
UHGV-0160195_28	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0160195_28	UniRef90	UniRef90_A0A6L8RVY0	Sigma70_r4 domain-containing protein	NA
UHGV-0160195_28	eggNOG-mapper	411461.DORFOR_00754	sigma factor activity	NA
UHGV-0160195_28	Pfam	PF07374	NA	DUF1492
UHGV-0160195_28	COG	COG1191	DNA-directed RNA polymerase specialized sigma subunit	NA
UHGV-0160195_28	Structural annotation	PF07374, MF_00674, NF007227, COG1342	NA	NA
UHGV-0160195_29	KOfam	K07474	xtmA; phage terminase small subunit	NA
UHGV-0160195_29	PHROG	phrog_51	terminase small subunit	head and packaging
UHGV-0160195_29	UniRef90	UniRef90_UPI00191E69A6	terminase small subunit	NA
UHGV-0160195_29	eggNOG-mapper	697281.Mahau_0566	Terminase Small Subunit	NA
UHGV-0160195_29	Pfam	PF03592	Terminase small subunit	Terminase_2
UHGV-0160195_29	COG	COG3728	Phage terminase, small subunit	NA
UHGV-0160195_29	Structural annotation	PF03592, COG3728	NA	NA
UHGV-0160195_30	PHROG	phrog_1233	NA	unknown function
UHGV-0160195_30	eggNOG-mapper	1256908.HMPREF0373_00487	NA	NA
UHGV-0160195_31	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0160195_31	PHROG	phrog_3717	terminase large subunit	head and packaging
UHGV-0160195_31	UniRef90	UniRef90_UPI00191E59EB	PBSX family phage terminase large subunit	NA
UHGV-0160195_31	eggNOG-mapper	1256908.HMPREF0373_00486	Phage terminase, large subunit, PBSX family	NA
UHGV-0160195_31	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-0160195_31	Pfam	PF17288	Terminase RNAseH like domain	Terminase_3C
UHGV-0160195_31	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0160195_31	COG	COG1783	Phage terminase large subunit	NA
UHGV-0160195_31	Structural annotation	PF04466, PF17288, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0160195_32	PHROG	phrog_64	portal protein	head and packaging
UHGV-0160195_32	UniRef90	UniRef90_UPI00157076FC	phage portal protein	NA
UHGV-0160195_32	eggNOG-mapper	1235800.C819_02239	phage portal protein, SPP1	NA
UHGV-0160195_32	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0160195_32	Structural annotation	PF05133, MF_04120, TIGR01538, COG3567	NA	NA
UHGV-0160195_33	PHROG	phrog_595	head maturation protease	head and packaging
UHGV-0160195_33	UniRef90	UniRef90_UPI001C0FAD87	phage head morphogenesis protein	NA
UHGV-0160195_33	eggNOG-mapper	1256908.HMPREF0373_00484	Phage Mu protein F like protein	NA
UHGV-0160195_33	Pfam	PF04233	Phage Mu protein F like protein	Phage_Mu_F
UHGV-0160195_33	Pfam	PF21814	NA	DUF6883
UHGV-0160195_33	COG	COG2369	NA	NA
UHGV-0160195_33	Structural annotation	PF21814, PF06152, TIGR01641, COG2369	NA	NA
UHGV-0160195_34	PHROG	phrog_34731	NA	unknown function
UHGV-0160195_34	eggNOG-mapper	365659.smi_0098	Cysteine-rich CPCC	NA
UHGV-0160195_34	Structural annotation	PF02699, MF_00369, TIGR00739, COG1862	NA	NA
UHGV-0160195_35	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-0160195_35	UniRef90	UniRef90_UPI00156E5EEA	phage scaffolding protein	NA
UHGV-0160195_35	eggNOG-mapper	1235800.C819_02235	Phage minor structural protein GP20	NA
UHGV-0160195_35	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-0160195_35	Structural annotation	PF06810	NA	NA
UHGV-0160195_36	PHROG	phrog_212	major head protein	head and packaging
UHGV-0160195_36	UniRef90	UniRef90_UPI001570F689	phage capsid protein	NA
UHGV-0160195_36	eggNOG-mapper	1235800.C819_02234	NA	NA
UHGV-0160195_36	Structural annotation	PF05065, MF_04119, NF041162, COG4653	NA	NA
UHGV-0160195_38	PHROG	phrog_1236	head protein	head and packaging
UHGV-0160195_38	eggNOG-mapper	1235800.C819_02232	NA	NA
UHGV-0160195_38	Structural annotation	PF05135	NA	NA
UHGV-0160195_39	PHROG	phrog_1059	head-tail adaptor	connector
UHGV-0160195_39	UniRef90	UniRef90_UPI00156FFBE5	head-tail adaptor protein	NA
UHGV-0160195_39	eggNOG-mapper	1235800.C819_02231	NA	NA
UHGV-0160195_39	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0160195_40	UniRef90	UniRef90_UPI00156FBF43	HK97 gp10 family phage protein	NA
UHGV-0160195_40	eggNOG-mapper	1256908.HMPREF0373_00473	NA	NA
UHGV-0160195_40	Structural annotation	PF20039, TIGR01725, COG5005	NA	NA
UHGV-0160195_41	PHROG	phrog_957	head protein	head and packaging
UHGV-0160195_41	eggNOG-mapper	1235800.C819_02229	NA	NA
UHGV-0160195_41	Structural annotation	PF12691	NA	NA
UHGV-0160195_42	PHROG	phrog_885	major tail protein	tail
UHGV-0160195_42	eggNOG-mapper	1256908.HMPREF0373_00471	NA	NA
UHGV-0160195_42	Structural annotation	PF06488, TIGR01603, COG5437	NA	NA
UHGV-0160195_43	PHROG	phrog_1021	NA	unknown function
UHGV-0160195_43	eggNOG-mapper	1256908.HMPREF0373_00470	NA	NA
UHGV-0160195_44	PHROG	phrog_1272	tail length tape measure protein	tail
UHGV-0160195_44	UniRef90	UniRef90_UPI0015705DAC	phage tail tape measure protein	NA
UHGV-0160195_44	eggNOG-mapper	946235.CAER01000065_gene2435	Phage tail tape measure protein	NA
UHGV-0160195_44	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-0160195_44	Pfam	PF04513	Baculovirus polyhedron envelope protein, PEP, C terminus	Baculo_PEP_C
UHGV-0160195_44	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-0160195_44	COG	COG5280	Phage-related minor tail protein	NA
UHGV-0160195_45	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-0160195_45	UniRef90	UniRef90_A0A414P9H2	Phage tail protein	NA
UHGV-0160195_45	eggNOG-mapper	1256908.HMPREF0373_00467	NA	NA
UHGV-0160195_45	Structural annotation	PF16774, TIGR01633, COG4722	NA	NA
UHGV-0160195_46	PHROG	phrog_538	minor tail protein	tail
UHGV-0160195_46	UniRef90	UniRef90_A0A1C5PP83	Phage-related holin (Lysis protein)	NA
UHGV-0160195_46	eggNOG-mapper	1256908.HMPREF0373_00466	NA	NA
UHGV-0160195_46	Pfam	PF14594	Siphovirus ReqiPepy6 Gp37-like protein	Sipho_Gp37
UHGV-0160195_46	Structural annotation	PF14594, TIGR01665, COG4379	NA	NA
UHGV-0160195_47	PHROG	phrog_9994	NA	unknown function
UHGV-0160195_47	UniRef90	UniRef90_A0A845KHH7	H_lectin domain-containing protein	NA
UHGV-0160195_47	eggNOG-mapper	1256908.HMPREF0373_00465	NA	NA
UHGV-0160195_47	Pfam	PF09458	H-type lectin domain	H_lectin
UHGV-0160195_47	Structural annotation	PF20747	NA	NA
UHGV-0160195_48	PHROG	phrog_19695	NA	unknown function
UHGV-0160195_48	eggNOG-mapper	411462.DORLON_00772	NA	NA
UHGV-0160195_48	Structural annotation	PF19714	NA	NA
UHGV-0160195_49	eggNOG-mapper	411462.DORLON_00771	NA	NA
UHGV-0160195_49	Structural annotation	PF10651	NA	NA
UHGV-0160195_50	Structural annotation	PF10807, MF_01372, NF007541	NA	NA
UHGV-0160195_51	Structural annotation	PF06184, MF_01372, TIGR03511	NA	NA
UHGV-0160195_53	PHROG	phrog_18593	NA	unknown function
UHGV-0160195_53	UniRef90	UniRef90_A0A2Y9CAD1	Carbohydrate binding domain-containing protein	NA
UHGV-0160195_53	eggNOG-mapper	411460.RUMTOR_02099	NA	NA
UHGV-0160195_53	Pfam	PF02839	Carbohydrate-binding module family 5/12	CBM_5_12
UHGV-0160195_53	Structural annotation	PF14600	NA	NA
UHGV-0160195_54	PHROG	phrog_199	holin	lysis
UHGV-0160195_54	UniRef90	UniRef90_A6BEP6	Toxin secretion/phage lysis holin	NA
UHGV-0160195_54	eggNOG-mapper	411462.DORLON_00766	Bacteriophage holin family	NA
UHGV-0160195_54	Pfam	PF05105	Bacteriophage holin family	Phage_holin_4_1
UHGV-0160195_54	NCBIFam	TIGR01593.1	toxin secretion/phage lysis holin	NA
UHGV-0160195_54	COG	COG4824	Phage-related holin (Lysis protein)	NA
UHGV-0160195_54	Structural annotation	PF05105, TIGR01593, COG4824	NA	NA
UHGV-0160195_55	PHROG	phrog_1048	NA	unknown function
UHGV-0160195_55	UniRef90	UniRef90_A0A416GZ68	NA	NA
UHGV-0160195_55	eggNOG-mapper	411462.DORLON_00765	NA	NA
UHGV-0160195_55	Pfam	PF11195	NA	DUF2829
UHGV-0160195_55	dbAPIS	APIS029	Tad2 is a "sponge" that sequesters the immune signaling molecules produced by Thoeris TIR-domain proteins in response to phage.	NA
UHGV-0160195_55	Structural annotation	PF11195	NA	NA
UHGV-0160195_56	PHROG	phrog_2742	endolysin	lysis
UHGV-0160195_56	UniRef90	UniRef90_A0A845KJG7	MurNAc-LAA domain-containing protein	NA
UHGV-0160195_56	eggNOG-mapper	411462.DORLON_00764	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0160195_56	Pfam	PF01520	N-acetylmuramoyl-L-alanine amidase	Amidase_3
UHGV-0160195_56	Pfam	PF07538	Clostridial hydrophobic W	ChW
UHGV-0160195_56	COG	COG0860	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0160195_56	Structural annotation	PF01520, TIGR02883, COG0860	NA	NA