UHGV-0160234

Genome information

Genome length 38,599 bps

CDS count 62

Completeness 86.68% (medium-quality)

geNomad score 0.9791

Prediction confidence Confident

Genome information
Genome ID	UHGV-0160234
vOTU ID	vOTU-027963
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_489057
BioSample	SAMN06110122
Country	Netherlands
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	86.68% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	21
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9791
Virus hallmark genes (geNomad)	8
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	36.15
Jumbo phage	No

Genome content
Genome length	38,599 bps
GC content	37.31%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	62
CDS density	90.76%
Average CDS length	567.29 bps
tRNA count	2
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0160234_1	KOfam	K14059	int; integrase	NA
UHGV-0160234_1	PHROG	phrog_1	integrase	integration and excision
UHGV-0160234_1	UniRef90	UniRef90_A0A173TZS3	Integrase	NA
UHGV-0160234_1	eggNOG-mapper	1235798.C817_05483	Phage integrase family	NA
UHGV-0160234_1	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0160234_1	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0160234_1	Structural annotation	PF00589, PF14659, MF_02055, TIGR02224, COG4974	NA	NA
UHGV-0160234_2	eggNOG-mapper	397291.C804_05803	response to antibiotic	NA
UHGV-0160234_2	COG	COG4640	NA	NA
UHGV-0160234_3	PHROG	phrog_87	metallo-protease	other
UHGV-0160234_3	UniRef90	UniRef90_A0A173TZ87	Metallopeptidase immA	NA
UHGV-0160234_3	eggNOG-mapper	476272.RUMHYD_01733	IrrE N-terminal-like domain	NA
UHGV-0160234_3	Pfam	PF06114	IrrE N-terminal-like domain	Peptidase_M78
UHGV-0160234_3	COG	COG2856	Zn-dependent peptidase ImmA, M78 family	NA
UHGV-0160234_3	Structural annotation	PF06114, COG2856	NA	NA
UHGV-0160234_4	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0160234_4	UniRef90	UniRef90_A0A414RMQ9	XRE family transcriptional regulator	NA
UHGV-0160234_4	eggNOG-mapper	742733.HMPREF9469_01855	Helix-turn-helix XRE-family like proteins	NA
UHGV-0160234_4	Pfam	PF07022	Bacteriophage CI repressor helix-turn-helix domain	Phage_CI_repr
UHGV-0160234_4	COG	COG3093	Plasmid maintenance system antidote protein VapI, contains XRE-type HTH domain	NA
UHGV-0160234_4	Structural annotation	PF12844, NF041951, COG1476	NA	NA
UHGV-0160234_5	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0160234_5	UniRef90	UniRef90_A0A417V5F3	XRE family transcriptional regulator	NA
UHGV-0160234_5	eggNOG-mapper	476272.RUMHYD_02827	Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair	NA
UHGV-0160234_5	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0160234_5	COG	COG1974	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	NA
UHGV-0160234_5	Structural annotation	PF01381, NF041951, COG3655	NA	NA
UHGV-0160234_8	PHROG	phrog_36464	NA	unknown function
UHGV-0160234_8	eggNOG-mapper	1235798.C817_05488	NA	NA
UHGV-0160234_8	Structural annotation	PF09035	NA	NA
UHGV-0160234_12	PHROG	phrog_253	Mu Gam-like end protection	DNA, RNA and nucleotide metabolism
UHGV-0160234_12	UniRef90	UniRef90_UPI00156F9B5D	siphovirus Gp157 family protein	NA
UHGV-0160234_12	eggNOG-mapper	683837.lse_2160	Siphovirus Gp157	NA
UHGV-0160234_12	Pfam	PF05565	Siphovirus Gp157	Sipho_Gp157
UHGV-0160234_12	Structural annotation	PF05565, NF002139	NA	NA
UHGV-0160234_13	PHROG	phrog_155	Erf-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0160234_13	UniRef90	UniRef90_A0A417V5L9	Recombinase	NA
UHGV-0160234_13	eggNOG-mapper	929506.CbC4_1193	ERF superfamily	NA
UHGV-0160234_13	Pfam	PF04404	ERF superfamily	ERF
UHGV-0160234_13	Structural annotation	PF04404, TIGR00607, COG4712	NA	NA
UHGV-0160234_14	PHROG	phrog_72	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
UHGV-0160234_14	UniRef90	UniRef90_A0A285PU94	Recombinase NinB	NA
UHGV-0160234_14	eggNOG-mapper	411490.ANACAC_00804	NA	NA
UHGV-0160234_14	Structural annotation	PF05772, NF007281	NA	NA
UHGV-0160234_15	PHROG	phrog_7566	NA	unknown function
UHGV-0160234_15	UniRef90	UniRef90_A0A374AGN9	Phosphoenolpyruvate carboxykinase	NA
UHGV-0160234_15	eggNOG-mapper	1304866.K413DRAFT_1198	NA	NA
UHGV-0160234_16	UniRef90	UniRef90_A0A173TYT6	Endodeoxyribonuclease RusA	NA
UHGV-0160234_16	eggNOG-mapper	1158604.I591_01786	Endodeoxyribonuclease RusA	NA
UHGV-0160234_16	COG	COG4570	Holliday junction resolvase RusA (prophage-encoded endonuclease)	NA
UHGV-0160234_17	PHROG	phrog_16304	NA	unknown function
UHGV-0160234_17	eggNOG-mapper	742733.HMPREF9469_01845	NA	NA
UHGV-0160234_17	Structural annotation	PF10771, MF_01177, TIGR01714, COG0640	NA	NA
UHGV-0160234_18	PHROG	phrog_1123	NA	unknown function
UHGV-0160234_18	UniRef90	UniRef90_A0A6N9P096	DNA gyrase	NA
UHGV-0160234_18	eggNOG-mapper	1308863.U5J9F3_9CAUD	NA	NA
UHGV-0160234_18	Structural annotation	PF03551, MF_01804, TIGR03433, COG1695	NA	NA
UHGV-0160234_19	UniRef90	UniRef90_A0A173TZ35	Transposase	NA
UHGV-0160234_19	Pfam	PF01527	Transposase	HTH_Tnp_1
UHGV-0160234_19	Structural annotation	PF13518, PF13613, NF040595, COG3415	NA	NA
UHGV-0160234_20	PHROG	phrog_2316	NA	unknown function
UHGV-0160234_20	UniRef90	UniRef90_A0A3E4YBW5	NA	NA
UHGV-0160234_20	eggNOG-mapper	1007103.AFHW01000207_gene1752	NA	NA
UHGV-0160234_20	Pfam	PF16475	NA	DUF5052
UHGV-0160234_20	Structural annotation	PF16475, MF_00436, NF033216, COG1923	NA	NA
UHGV-0160234_21	PHROG	phrog_2715	NA	unknown function
UHGV-0160234_21	UniRef90	UniRef90_A0A1B8RSY6	NA	NA
UHGV-0160234_21	eggNOG-mapper	642492.Clole_0950	NA	NA
UHGV-0160234_21	Structural annotation	PF18406	NA	NA
UHGV-0160234_22	eggNOG-mapper	1121871.AUAT01000002_gene1365	NA	NA
UHGV-0160234_29	eggNOG-mapper	411461.DORFOR_01156	NA	NA
UHGV-0160234_31	Structural annotation	PF11950	NA	NA
UHGV-0160234_32	Structural annotation	PF19079, TIGR04203	NA	NA
UHGV-0160234_33	Structural annotation	PF14084	NA	NA
UHGV-0160234_35	Structural annotation	PF14844	NA	NA
UHGV-0160234_36	PHROG	phrog_229	MazG-like pyrophosphatase	other
UHGV-0160234_36	UniRef90	UniRef90_A0A173TWB1	MazG nucleotide pyrophosphohydrolase domain	NA
UHGV-0160234_36	eggNOG-mapper	445335.CBN_1365	MazG nucleotide pyrophosphohydrolase domain	NA
UHGV-0160234_36	Pfam	PF03819	MazG nucleotide pyrophosphohydrolase domain	MazG
UHGV-0160234_36	COG	COG1694	NTP pyrophosphatase, house-cleaning of non-canonical NTPs	NA
UHGV-0160234_36	Structural annotation	PF03819, MF_01020, TIGR03188, COG1694	NA	NA
UHGV-0160234_38	PHROG	phrog_606	terminase small subunit	head and packaging
UHGV-0160234_38	UniRef90	UniRef90_UPI0004BAB6EB	DNA-packaging protein	NA
UHGV-0160234_38	eggNOG-mapper	397290.C810_05185	DNA-packaging protein gp3	NA
UHGV-0160234_38	Pfam	PF16677	DNA-packaging protein gp3	GP3_package
UHGV-0160234_38	Structural annotation	PF16677	NA	NA
UHGV-0160234_39	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0160234_39	PHROG	phrog_3717	terminase large subunit	head and packaging
UHGV-0160234_39	UniRef90	UniRef90_UPI00156DBE69	PBSX family phage terminase large subunit	NA
UHGV-0160234_39	eggNOG-mapper	246194.CHY_1680	Terminase RNAseH like domain	NA
UHGV-0160234_39	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-0160234_39	Pfam	PF17288	Terminase RNAseH like domain	Terminase_3C
UHGV-0160234_39	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0160234_39	COG	COG1783	Phage terminase large subunit	NA
UHGV-0160234_39	Structural annotation	PF04466, PF17288, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0160234_40	PHROG	phrog_533	portal protein	head and packaging
UHGV-0160234_40	UniRef90	UniRef90_A0A173TY48	Phage portal protein, putative, A118 family	NA
UHGV-0160234_40	eggNOG-mapper	33035.JPJF01000106_gene3135	phage minor capsid protein	NA
UHGV-0160234_40	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-0160234_42	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0160234_42	UniRef90	UniRef90_A0A173TY40	Phage minor capsid protein 2	NA
UHGV-0160234_42	eggNOG-mapper	33035.JPJF01000106_gene3134	Phage minor capsid protein 2	NA
UHGV-0160234_42	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0160234_42	COG	COG2369	NA	NA
UHGV-0160234_42	Structural annotation	PF06152	NA	NA
UHGV-0160234_43	UniRef90	UniRef90_A0A417UWY7	CTP synthase	NA
UHGV-0160234_44	PHROG	phrog_1048	NA	unknown function
UHGV-0160234_44	UniRef90	UniRef90_UPI00156DCDC3	NA	NA
UHGV-0160234_44	eggNOG-mapper	457412.RSAG_01107	NA	NA
UHGV-0160234_44	Pfam	PF11195	NA	DUF2829
UHGV-0160234_44	dbAPIS	APIS029	Tad2 is a "sponge" that sequesters the immune signaling molecules produced by Thoeris TIR-domain proteins in response to phage.	NA
UHGV-0160234_44	Structural annotation	PF11195	NA	NA
UHGV-0160234_45	PHROG	phrog_419	NA	unknown function
UHGV-0160234_45	eggNOG-mapper	358220.C380_08880	Phage protein (N4 Gp49/phage Sf6 gene 66) family	NA
UHGV-0160234_45	Structural annotation	PF14083	NA	NA
UHGV-0160234_46	UniRef90	UniRef90_UPI001C0EBA51	phage scaffolding protein	NA
UHGV-0160234_47	PHROG	phrog_247	major head protein	head and packaging
UHGV-0160234_47	UniRef90	UniRef90_UPI001BA5448B	major capsid protein	NA
UHGV-0160234_47	eggNOG-mapper	33035.JPJF01000106_gene3132	NA	NA
UHGV-0160234_47	Structural annotation	PF20036, MF_04113, TIGR04387, COG4653	NA	NA
UHGV-0160234_48	PHROG	phrog_541	head-tail adaptor	connector
UHGV-0160234_48	eggNOG-mapper	1235790.C805_00076	NA	NA
UHGV-0160234_49	PHROG	phrog_1233	NA	unknown function
UHGV-0160234_49	UniRef90	UniRef90_UPI001C39EFB9	Dienelactone hydrolase family protein	NA
UHGV-0160234_49	eggNOG-mapper	33035.JPJF01000106_gene3130	NA	NA
UHGV-0160234_50	PHROG	phrog_3366	NA	unknown function
UHGV-0160234_50	eggNOG-mapper	476272.RUMHYD_01779	NA	NA
UHGV-0160234_50	Structural annotation	PF20536, COG5614	NA	NA
UHGV-0160234_51	PHROG	phrog_556	minor head protein	head and packaging
UHGV-0160234_51	UniRef90	UniRef90_UPI000E4989EB	minor capsid protein	NA
UHGV-0160234_51	eggNOG-mapper	476272.RUMHYD_01780	NA	NA
UHGV-0160234_51	Pfam	PF11114	Minor capsid protein	Minor_capsid_2
UHGV-0160234_51	Structural annotation	PF11114	NA	NA
UHGV-0160234_52	PHROG	phrog_3266	tail completion	connector
UHGV-0160234_52	eggNOG-mapper	476272.RUMHYD_01781	NA	NA
UHGV-0160234_52	Structural annotation	PF12691	NA	NA
UHGV-0160234_53	PHROG	phrog_3099	NA	unknown function
UHGV-0160234_53	eggNOG-mapper	411902.CLOBOL_00129	NA	NA
UHGV-0160234_53	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-0160234_54	PHROG	phrog_11299	NA	unknown function
UHGV-0160234_54	eggNOG-mapper	411459.RUMOBE_01382	NA	NA
UHGV-0160234_54	Structural annotation	PF10666	NA	NA
UHGV-0160234_55	PHROG	phrog_706	NA	unknown function
UHGV-0160234_55	UniRef90	UniRef90_UPI001BAD00AD	Gp15 family bacteriophage protein	NA
UHGV-0160234_55	eggNOG-mapper	411459.RUMOBE_01383	Bacteriophage Gp15 protein	NA
UHGV-0160234_55	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-0160234_55	Structural annotation	PF06854	NA	NA
UHGV-0160234_56	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-0160234_56	UniRef90	UniRef90_A0A173TXH9	Phage-related protein	NA
UHGV-0160234_56	eggNOG-mapper	411459.RUMOBE_01384	phage tail tape measure protein	NA
UHGV-0160234_56	COG	COG5412	Phage-related protein	NA
UHGV-0160234_56	Structural annotation	PF11172	NA	NA
UHGV-0160234_57	PHROG	phrog_1194	NA	unknown function
UHGV-0160234_57	Structural annotation	PF20458, TIGR02126, COG3499	NA	NA
UHGV-0160234_58	PHROG	phrog_6616	tail protein	tail
UHGV-0160234_58	UniRef90	UniRef90_A0A173TV73	Collagen triple helix repeat (20 copies)	NA
UHGV-0160234_58	eggNOG-mapper	33035.JPJF01000043_gene1002	NA	NA
UHGV-0160234_59	PHROG	phrog_18444	NA	unknown function
UHGV-0160234_59	UniRef90	UniRef90_A0A4U9RQD7	Peptide chain release factor 2	NA
UHGV-0160234_60	eggNOG-mapper	1123075.AUDP01000020_gene1530	Transposase	NA
UHGV-0160234_60	COG	COG4372	NA	NA
UHGV-0160234_61	PHROG	phrog_962	holin	lysis
UHGV-0160234_61	UniRef90	UniRef90_UPI0015714279	phage holin	NA
UHGV-0160234_61	eggNOG-mapper	1120998.AUFC01000030_gene2252	Bacteriophage holin	NA
UHGV-0160234_61	Pfam	PF04531	Bacteriophage holin	Phage_holin_1
UHGV-0160234_61	NCBIFam	TIGR01598.1	phage holin	NA
UHGV-0160234_61	COG	COG5546	NA	NA
UHGV-0160234_62	KOfam	K11062	entD; probable enterotoxin D	NA
UHGV-0160234_62	PHROG	phrog_670	endolysin	lysis
UHGV-0160234_62	UniRef90	UniRef90_UPI00156EE520	amidase	NA
UHGV-0160234_62	eggNOG-mapper	411490.ANACAC_00703	Ami_2	NA
UHGV-0160234_62	Pfam	PF01510	N-acetylmuramoyl-L-alanine amidase	Amidase_2
UHGV-0160234_62	Pfam	PF08239	Bacterial SH3 domain	SH3_3
UHGV-0160234_62	COG	COG5632	N-acetylmuramoyl-L-alanine amidase CwlA	NA
UHGV-0160234_62	Structural annotation	PF01510, PF08239, MF_04111, NF008758, COG5632	NA	NA