UHGV-0160261

Genome information

Genome length 29,355 bps

CDS count 45

Completeness 84.06% (medium-quality)

geNomad score 0.9791

Prediction confidence Confident

Genome information
Genome ID	UHGV-0160261
vOTU ID	vOTU-027964
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_485547
BioSample	SAMN06110116
Country	Netherlands
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	84.06% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	20
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9791
Virus hallmark genes (geNomad)	8
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	43.67
Jumbo phage	No

Genome content
Genome length	29,355 bps
GC content	43.59%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	45
CDS density	93.06%
Average CDS length	611.53 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0160261_1	Structural annotation	PF18573, NF033147	NA	NA
UHGV-0160261_2	eggNOG-mapper	641112.ACOK01000103_gene525	NA	NA
UHGV-0160261_3	PHROG	phrog_21718	NA	unknown function
UHGV-0160261_6	PHROG	phrog_297	holin	lysis
UHGV-0160261_6	UniRef90	UniRef90_A0A3D2TQQ9	Peptidase C51 domain-containing protein	NA
UHGV-0160261_6	eggNOG-mapper	904314.SEVCU012_1218	CHAP domain	NA
UHGV-0160261_6	Pfam	PF05257	CHAP domain	CHAP
UHGV-0160261_6	COG	COG1388	LysM repeat	NA
UHGV-0160261_6	Structural annotation	PF06940, TIGR02594, COG3942	NA	NA
UHGV-0160261_7	PHROG	phrog_962	holin	lysis
UHGV-0160261_7	UniRef90	UniRef90_UPI001655FC48	phage holin	NA
UHGV-0160261_7	eggNOG-mapper	887929.HMP0721_1251	Bacteriophage holin	NA
UHGV-0160261_7	Pfam	PF04531	Bacteriophage holin	Phage_holin_1
UHGV-0160261_7	NCBIFam	TIGR01598.1	phage holin	NA
UHGV-0160261_7	COG	COG5546	NA	NA
UHGV-0160261_7	Structural annotation	COG5546	NA	NA
UHGV-0160261_8	PHROG	phrog_1863	NA	unknown function
UHGV-0160261_8	eggNOG-mapper	693746.OBV_18260	NA	NA
UHGV-0160261_10	KOfam	K24248	EMID1; EMI domain-containing protein 1	NA
UHGV-0160261_10	PHROG	phrog_5073	tail fiber protein	tail
UHGV-0160261_10	Pfam	PF01391	Collagen triple helix repeat (20 copies)	Collagen
UHGV-0160261_11	PHROG	phrog_7121	tail fiber protein	tail
UHGV-0160261_11	eggNOG-mapper	1235793.C809_04661	NA	NA
UHGV-0160261_11	Pfam	PF13884	Chaperone of endosialidase	Peptidase_S74
UHGV-0160261_11	Structural annotation	PF14594, NF033848, COG3501	NA	NA
UHGV-0160261_12	PHROG	phrog_1194	NA	unknown function
UHGV-0160261_12	Structural annotation	PF20458, TIGR01633, COG4718	NA	NA
UHGV-0160261_13	KOfam	K10402	KIF20; kinesin family member 20	NA
UHGV-0160261_13	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-0160261_13	eggNOG-mapper	1280692.AUJL01000027_gene2150	phage tail tape measure protein	NA
UHGV-0160261_13	COG	COG1511	NA	NA
UHGV-0160261_14	PHROG	phrog_706	NA	unknown function
UHGV-0160261_14	UniRef90	UniRef90_UPI00067E77F7	Gp15 family bacteriophage protein	NA
UHGV-0160261_14	eggNOG-mapper	469596.HMPREF9488_01327	Bacteriophage Gp15 protein	NA
UHGV-0160261_14	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-0160261_14	Structural annotation	PF06854	NA	NA
UHGV-0160261_15	Structural annotation	PF10666	NA	NA
UHGV-0160261_16	PHROG	phrog_3099	NA	unknown function
UHGV-0160261_16	eggNOG-mapper	645991.Sgly_0346	NA	NA
UHGV-0160261_16	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-0160261_17	PHROG	phrog_3266	tail completion	connector
UHGV-0160261_17	UniRef90	UniRef90_A0A416DT59	Chloramphenicol resistance protein	NA
UHGV-0160261_17	eggNOG-mapper	411470.RUMGNA_02223	NA	NA
UHGV-0160261_17	Structural annotation	PF12691	NA	NA
UHGV-0160261_18	PHROG	phrog_556	minor head protein	head and packaging
UHGV-0160261_18	UniRef90	UniRef90_UPI001F06267A	minor capsid protein	NA
UHGV-0160261_18	eggNOG-mapper	1120998.AUFC01000030_gene2239	Minor capsid protein	NA
UHGV-0160261_18	Pfam	PF11114	Minor capsid protein	Minor_capsid_2
UHGV-0160261_18	Structural annotation	PF11114	NA	NA
UHGV-0160261_19	PHROG	phrog_3366	NA	unknown function
UHGV-0160261_19	Pfam	PF20536	NA	DUF6751
UHGV-0160261_19	Structural annotation	PF20536, COG5614	NA	NA
UHGV-0160261_20	PHROG	phrog_541	head-tail adaptor	connector
UHGV-0160261_20	UniRef90	UniRef90_R6DKE0	Putative gp8	NA
UHGV-0160261_20	eggNOG-mapper	632245.CLP_1650	NA	NA
UHGV-0160261_21	PHROG	phrog_422	major head protein	head and packaging
UHGV-0160261_21	UniRef90	UniRef90_UPI00148C9F04	N4-gp56 family major capsid protein	NA
UHGV-0160261_21	eggNOG-mapper	764291.STRUR_2102	NA	NA
UHGV-0160261_21	Structural annotation	PF19821, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-0160261_22	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-0160261_22	UniRef90	UniRef90_R6DN20	Phage minor structural protein GP20	NA
UHGV-0160261_22	eggNOG-mapper	748727.CLJU_c31330	Phage minor structural protein GP20	NA
UHGV-0160261_22	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-0160261_22	Structural annotation	PF06810	NA	NA
UHGV-0160261_23	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0160261_23	UniRef90	UniRef90_R5XZV2	Protein gp4	NA
UHGV-0160261_23	eggNOG-mapper	718252.FP2_06690	NA	NA
UHGV-0160261_23	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0160261_23	COG	COG2369	NA	NA
UHGV-0160261_23	Structural annotation	PF06152	NA	NA
UHGV-0160261_24	PHROG	phrog_533	portal protein	head and packaging
UHGV-0160261_24	UniRef90	UniRef90_R6DKE2	Phage minor capsid protein	NA
UHGV-0160261_24	eggNOG-mapper	428127.EUBDOL_01228	phage minor capsid protein	NA
UHGV-0160261_24	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0160261_24	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-0160261_25	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0160261_25	PHROG	phrog_2	terminase large subunit	head and packaging
UHGV-0160261_25	UniRef90	UniRef90_R6DVT6	Phage terminase large subunit PBSX family	NA
UHGV-0160261_25	eggNOG-mapper	1120998.AUFC01000030_gene2231	Phage terminase, large subunit, PBSX family	NA
UHGV-0160261_25	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-0160261_25	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0160261_25	COG	COG1783	Phage terminase large subunit	NA
UHGV-0160261_25	Structural annotation	PF04466, PF20454, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-0160261_26	PHROG	phrog_2412	NA	unknown function
UHGV-0160261_26	UniRef90	UniRef90_UPI001C38E948	KGG domain-containing protein	NA
UHGV-0160261_26	eggNOG-mapper	1125712.HMPREF1316_1524	NA	NA
UHGV-0160261_28	PHROG	phrog_9479	NA	unknown function
UHGV-0160261_28	eggNOG-mapper	511680.BUTYVIB_01226	NA	NA
UHGV-0160261_28	Structural annotation	PF15529	NA	NA
UHGV-0160261_29	PHROG	phrog_940	nuclease	DNA, RNA and nucleotide metabolism
UHGV-0160261_29	UniRef90	UniRef90_A0A4R3TFN4	ParB-like nuclease family protein	NA
UHGV-0160261_29	eggNOG-mapper	1232449.BAHV02000018_gene1534	NA	NA
UHGV-0160261_29	PADLOC	MTase_II_00015	Type II methyltransferase	RM
UHGV-0160261_29	Pfam	PF02195	ParB/Sulfiredoxin domain	ParBc
UHGV-0160261_29	Pfam	PF14386	NA	DUF4417
UHGV-0160261_29	COG	COG1475	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	NA
UHGV-0160261_29	Structural annotation	PF14386, PF02195, TIGR00180	NA	NA
UHGV-0160261_30	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0160261_30	UniRef90	UniRef90_A0A3D3FGT2	Sigma70_r4 domain-containing protein	NA
UHGV-0160261_30	eggNOG-mapper	1408424.JHYI01000032_gene3838	NA	NA
UHGV-0160261_30	COG	COG1191	DNA-directed RNA polymerase specialized sigma subunit	NA
UHGV-0160261_30	Structural annotation	PF07374, TIGR02984	NA	NA
UHGV-0160261_31	KOfam	K01520	dut, DUT; dUTP pyrophosphatase [EC:3.6.1.23]	NA
UHGV-0160261_31	PHROG	phrog_135	dUTPase	DNA, RNA and nucleotide metabolism
UHGV-0160261_31	UniRef90	UniRef90_R6ILQ3	Deoxyuridine 5'-triphosphate nucleotidohydrolase	NA
UHGV-0160261_31	eggNOG-mapper	1282887.AUJG01000016_gene1113	NA	NA
UHGV-0160261_31	Pfam	PF00692	dUTPase	dUTPase
UHGV-0160261_31	NCBIFam	TIGR00576.1	dUTP diphosphatase	NA
UHGV-0160261_31	COG	COG0756	dUTP pyrophosphatase (dUTPase)	NA
UHGV-0160261_31	Structural annotation	PF00692, MF_00116, TIGR00576, COG0756	NA	NA
UHGV-0160261_36	PHROG	phrog_757	DNA methyltransferase	other
UHGV-0160261_36	UniRef90	UniRef90_A0A417JTT5	DNA cytosine methyltransferase	NA
UHGV-0160261_36	eggNOG-mapper	1235790.C805_00032	DNA (cytosine-5-)-methyltransferase activity	NA
UHGV-0160261_36	COG	COG0270	DNA-cytosine methylase	NA
UHGV-0160261_36	Structural annotation	PF00145, MF_01872, TIGR00675, COG0270	NA	NA
UHGV-0160261_37	PHROG	phrog_244	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0160261_37	eggNOG-mapper	33035.JPJF01000122_gene2460	NA	NA
UHGV-0160261_37	Structural annotation	PF01870, MF_01490, NF040854, COG1591	NA	NA
UHGV-0160261_38	KOfam	K03491	licR; probable licABCH operon transcriptional regulator	NA
UHGV-0160261_38	Pfam	PF08279	HTH domain	HTH_11
UHGV-0160261_38	COG	COG1827	Transcriptional regulator of NAD metabolism, contains HTH and 3H domains	NA
UHGV-0160261_39	PHROG	phrog_2514	DnaD-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0160261_39	UniRef90	UniRef90_A0A1M5ZHR8	TF_AP-2 domain-containing protein	NA
UHGV-0160261_39	eggNOG-mapper	886379.AEWI01000001_gene1766	NA	NA
UHGV-0160261_39	Structural annotation	PF09681, MF_01177, TIGR01714, COG0640	NA	NA
UHGV-0160261_40	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0160261_40	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0160261_40	UniRef90	UniRef90_R6RG83	Single-stranded DNA-binding protein	NA
UHGV-0160261_40	eggNOG-mapper	718252.FP2_06770	Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism	NA
UHGV-0160261_40	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0160261_40	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0160261_40	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0160261_40	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0160261_40	Structural annotation	PF00436, MF_00984, NF005241, COG0629	NA	NA
UHGV-0160261_41	PHROG	phrog_72	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
UHGV-0160261_41	UniRef90	UniRef90_UPI001F3F3E5C	recombination protein NinB	NA
UHGV-0160261_41	eggNOG-mapper	445972.ANACOL_01825	NA	NA
UHGV-0160261_41	Structural annotation	PF05772, NF007281	NA	NA
UHGV-0160261_42	PHROG	phrog_11717	NA	unknown function
UHGV-0160261_42	eggNOG-mapper	1399942.U3PCT3_9CAUD	NA	NA
UHGV-0160261_42	Structural annotation	PF06420, TIGR00607, COG4712	NA	NA
UHGV-0160261_43	PHROG	phrog_253	Mu Gam-like end protection	DNA, RNA and nucleotide metabolism
UHGV-0160261_43	UniRef90	UniRef90_UPI001CC4710F	siphovirus Gp157 family protein	NA
UHGV-0160261_43	eggNOG-mapper	1145276.T479_16375	Siphovirus Gp157	NA
UHGV-0160261_43	Pfam	PF05565	Siphovirus Gp157	Sipho_Gp157
UHGV-0160261_43	Structural annotation	PF05565, NF002139	NA	NA
UHGV-0160261_45	PHROG	phrog_27197	NA	unknown function
UHGV-0160261_45	eggNOG-mapper	573061.Clocel_3578	regulation of DNA-templated transcription, elongation	NA
UHGV-0160261_45	COG	COG5164	Transcription elongation factor SPT5	NA