UHGV-0160277

Genome information

Genome length 34,679 bps

CDS count 47

Completeness 97.12% (high-quality)

geNomad score 0.9767

Prediction confidence Confident

Genome information
Genome ID	UHGV-0160277
vOTU ID	vOTU-008587
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_457011
BioSample	SAMN05971566
Country	United States
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	97.12% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	18
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9767
Virus hallmark genes (geNomad)	9
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	47.82
Jumbo phage	No

Genome content
Genome length	34,679 bps
GC content	54.06%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	47
CDS density	91.17%
Average CDS length	676.09 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0160277_2	KOfam	K07726	K07726; putative transcriptional regulator	NA
UHGV-0160277_2	PHROG	phrog_2104	NA	unknown function
UHGV-0160277_2	UniRef90	UniRef90_X8K268	DNA-binding helix-turn-helix protein	NA
UHGV-0160277_2	eggNOG-mapper	888727.HMPREF9092_0491	Helix-turn-helix	NA
UHGV-0160277_2	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0160277_2	COG	COG2944	DNA-binding transcriptional regulator YiaG, XRE-type HTH domain	NA
UHGV-0160277_2	Structural annotation	PF15731, NF007481, COG2944	NA	NA
UHGV-0160277_4	PHROG	phrog_199	holin	lysis
UHGV-0160277_4	UniRef90	UniRef90_A0A316PI30	Holin	NA
UHGV-0160277_4	eggNOG-mapper	580327.Tthe_0809	Bacteriophage holin family	NA
UHGV-0160277_4	Pfam	PF05105	Bacteriophage holin family	Phage_holin_4_1
UHGV-0160277_4	NCBIFam	TIGR01593.1	toxin secretion/phage lysis holin	NA
UHGV-0160277_4	COG	COG4824	Phage-related holin (Lysis protein)	NA
UHGV-0160277_4	Structural annotation	PF05105, TIGR01593, COG4824	NA	NA
UHGV-0160277_5	KOfam	K19303	mepH; murein DD-endopeptidase [EC:3.4.-.-]	NA
UHGV-0160277_5	PHROG	phrog_329	minor tail protein	tail
UHGV-0160277_5	UniRef90	UniRef90_A0A2V2EEK9	NlpC/P60 domain-containing protein	NA
UHGV-0160277_5	eggNOG-mapper	357809.Cphy_0799	COG COG0791 Cell wall-associated hydrolases (invasion-associated proteins)	NA
UHGV-0160277_5	Pfam	PF00877	NlpC/P60 family	NLPC_P60
UHGV-0160277_5	Pfam	PF01471	Putative peptidoglycan binding domain	PG_binding_1
UHGV-0160277_5	COG	COG0791	Cell wall-associated hydrolase, NlpC_P60 family	NA
UHGV-0160277_5	Structural annotation	PF00877, PF01471, NF033743, COG0791	NA	NA
UHGV-0160277_6	Structural annotation	PF12988	NA	NA
UHGV-0160277_7	PHROG	phrog_774	NA	unknown function
UHGV-0160277_7	eggNOG-mapper	397290.C810_05225	NA	NA
UHGV-0160277_8	UniRef90	UniRef90_A0A658JZT9	Chitinase	NA
UHGV-0160277_8	eggNOG-mapper	552398.HMPREF0866_03095	NA	NA
UHGV-0160277_9	KOfam	K00986	ltrA; RNA-directed DNA polymerase [EC:2.7.7.49]	NA
UHGV-0160277_9	PHROG	phrog_1423	Reverse transcriptase	DNA, RNA and nucleotide metabolism
UHGV-0160277_9	UniRef90	UniRef90_R6GXU6	Reverse transcriptase domain-containing protein	NA
UHGV-0160277_9	eggNOG-mapper	742722.HMPREF9463_00262	Reverse transcriptase (RNA-dependent DNA polymerase)	NA
UHGV-0160277_9	PADLOC	icity0040	RT (reverse transcriptase)	CRISPR-CAS
UHGV-0160277_9	Pfam	PF00078	Reverse transcriptase (RNA-dependent DNA polymerase)	RVT_1
UHGV-0160277_9	COG	COG3344	Retron-type reverse transcriptase	NA
UHGV-0160277_9	Structural annotation	PF00078, TIGR04416, COG3344	NA	NA
UHGV-0160277_10	PHROG	phrog_30516	NA	unknown function
UHGV-0160277_10	eggNOG-mapper	411460.RUMTOR_01328	NA	NA
UHGV-0160277_10	Structural annotation	PF05635, NF008911	NA	NA
UHGV-0160277_11	PHROG	phrog_37900	NA	unknown function
UHGV-0160277_11	UniRef90	UniRef90_UPI00164D57E4	NA	NA
UHGV-0160277_11	eggNOG-mapper	1519439.JPJG01000060_gene1894	NA	NA
UHGV-0160277_11	Pfam	PF19789	NA	DUF6273
UHGV-0160277_11	COG	COG3827	Cell pole-organizing protein PopZ	NA
UHGV-0160277_11	Structural annotation	PF19789	NA	NA
UHGV-0160277_12	KOfam	K16628	COL7A; collagen type VII alpha	NA
UHGV-0160277_12	PHROG	phrog_819	tail protein	tail
UHGV-0160277_12	eggNOG-mapper	1519439.JPJG01000060_gene1892	Collagen triple helix repeat (20 copies)	NA
UHGV-0160277_12	Pfam	PF01391	Collagen triple helix repeat (20 copies)	Collagen
UHGV-0160277_12	COG	COG3064	Membrane protein TolA involved in colicin uptake	NA
UHGV-0160277_13	Structural annotation	PF18614, MF_00085, NF003082, COG0361	NA	NA
UHGV-0160277_14	PHROG	phrog_26795	NA	unknown function
UHGV-0160277_14	UniRef90	UniRef90_A0A5J6T4K8	Minor tail protein	NA
UHGV-0160277_14	eggNOG-mapper	714083.JH370377_gene1317	NA	NA
UHGV-0160277_14	Structural annotation	PF14594, NF033848, COG4379	NA	NA
UHGV-0160277_15	PHROG	phrog_37549	virion structural protein	head and packaging
UHGV-0160277_15	UniRef90	UniRef90_A0A3D0W045	Fibronectin type-III domain-containing protein	NA
UHGV-0160277_15	Pfam	PF19789	NA	DUF6273
UHGV-0160277_15	Structural annotation	PF19077, PF06199, PF16794, PF08329, MF_04116, NF040520, COG3401, COG3499	NA	NA
UHGV-0160277_16	PHROG	phrog_8462	tail length tape measure protein	tail
UHGV-0160277_16	UniRef90	UniRef90_A3DFW3	Tail tape measure protein TP901 core region	NA
UHGV-0160277_16	eggNOG-mapper	1195236.CTER_5104	nuclear chromosome segregation	NA
UHGV-0160277_16	COG	COG5283	Phage-related tail protein	NA
UHGV-0160277_16	Structural annotation	PF20155	NA	NA
UHGV-0160277_17	Structural annotation	PF11836	NA	NA
UHGV-0160277_18	PHROG	phrog_88	major tail protein	tail
UHGV-0160277_18	UniRef90	UniRef90_S0FUN2	Phage major tail protein, phi13 family	NA
UHGV-0160277_18	eggNOG-mapper	1195236.CTER_5106	phage major tail protein, phi13 family	NA
UHGV-0160277_18	NCBIFam	TIGR01603.1	major tail protein	NA
UHGV-0160277_18	COG	COG5492	NA	NA
UHGV-0160277_18	Structural annotation	PF04630, TIGR01603, COG3498	NA	NA
UHGV-0160277_19	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0160277_19	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-0160277_19	Structural annotation	TIGR01725	NA	NA
UHGV-0160277_20	eggNOG-mapper	1444310.JANV01000004_gene2676	NA	NA
UHGV-0160277_20	Structural annotation	PF05657	NA	NA
UHGV-0160277_21	PHROG	phrog_25	head closure Hc1	connector
UHGV-0160277_21	UniRef90	UniRef90_UPI00164B7AD3	phage head closure protein	NA
UHGV-0160277_21	eggNOG-mapper	935948.KE386495_gene1331	Phage head-tail joining protein	NA
UHGV-0160277_21	Pfam	PF05521	Phage head-tail joining protein	Phage_H_T_join
UHGV-0160277_21	NCBIFam	TIGR01563.1	phage head closure protein	NA
UHGV-0160277_21	COG	COG5614	Phage head-tail adaptor	NA
UHGV-0160277_21	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0160277_22	PHROG	phrog_442	head-tail adaptor	connector
UHGV-0160277_22	UniRef90	UniRef90_A0A1V5NXG6	Phage gp6-like head-tail connector protein	NA
UHGV-0160277_22	eggNOG-mapper	1449126.JQKL01000051_gene3168	Phage gp6-like head-tail connector protein	NA
UHGV-0160277_22	Pfam	PF05135	Phage gp6-like head-tail connector protein	Phage_connect_1
UHGV-0160277_22	NCBIFam	TIGR01560.2	head-tail connector protein	NA
UHGV-0160277_22	Structural annotation	PF05135, TIGR02215	NA	NA
UHGV-0160277_23	PHROG	phrog_10	major head protein	head and packaging
UHGV-0160277_23	UniRef90	UniRef90_UPI00164C0871	phage major capsid protein	NA
UHGV-0160277_23	eggNOG-mapper	1121324.CLIT_8c00760	phage major capsid protein, HK97 family	NA
UHGV-0160277_23	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0160277_23	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0160277_23	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0160277_23	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0160277_24	KOfam	K01358	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	NA
UHGV-0160277_24	PHROG	phrog_94	head maturation protease	head and packaging
UHGV-0160277_24	UniRef90	UniRef90_A0A1V5WAY6	ATP-dependent Clp protease proteolytic subunit	NA
UHGV-0160277_24	eggNOG-mapper	748727.CLJU_c03550	Belongs to the peptidase S14 family	NA
UHGV-0160277_24	Pfam	PF00574	Clp protease	CLP_protease
UHGV-0160277_24	COG	COG0740	ATP-dependent protease ClpP, protease subunit	NA
UHGV-0160277_24	Structural annotation	PF00574, MF_00444, NF009203, COG0740	NA	NA
UHGV-0160277_25	PHROG	phrog_12	portal protein	head and packaging
UHGV-0160277_25	UniRef90	UniRef90_A0A1V5WBB3	Phage portal protein	NA
UHGV-0160277_25	eggNOG-mapper	1410624.JNKK01000017_gene1975	Phage portal protein	NA
UHGV-0160277_25	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0160277_25	NCBIFam	TIGR01537.1	phage portal protein	NA
UHGV-0160277_25	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0160277_25	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-0160277_26	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0160277_26	UniRef90	UniRef90_UPI00164ABF0B	terminase large subunit	NA
UHGV-0160277_26	eggNOG-mapper	1122919.KB905559_gene1359	Terminase	NA
UHGV-0160277_26	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0160277_26	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0160277_26	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0160277_26	Structural annotation	PF20441, PF03354, MF_04145, TIGR01547, COG4626	NA	NA
UHGV-0160277_27	PHROG	phrog_83	terminase small subunit	head and packaging
UHGV-0160277_27	UniRef90	UniRef90_UPI0003615350	phage terminase small subunit P27 family	NA
UHGV-0160277_27	eggNOG-mapper	439292.Bsel_0787	Phage terminase small Subunit	NA
UHGV-0160277_27	Pfam	PF05119	Phage terminase, small subunit	Terminase_4
UHGV-0160277_27	NCBIFam	TIGR01558.1	phage terminase small subunit P27 family	NA
UHGV-0160277_27	COG	COG3747	Phage terminase, small subunit	NA
UHGV-0160277_27	Structural annotation	PF05119, TIGR01558, COG3747	NA	NA
UHGV-0160277_28	PHROG	phrog_144	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0160277_28	UniRef90	UniRef90_A0A1M5WHB2	5-methylcytosine-specific restriction enzyme A	NA
UHGV-0160277_28	eggNOG-mapper	371042.NG99_21295	HNH nucleases	NA
UHGV-0160277_28	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0160277_29	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0160277_29	Structural annotation	PF05263, TIGR01636	NA	NA
UHGV-0160277_30	eggNOG-mapper	1226322.HMPREF1545_04060	Mazg nucleotide pyrophosphohydrolase	NA
UHGV-0160277_30	COG	COG1694	NTP pyrophosphatase, house-cleaning of non-canonical NTPs	NA
UHGV-0160277_31	UniRef90	UniRef90_C7GC16	NA	NA
UHGV-0160277_31	Pfam	PF20037	NA	DUF6440
UHGV-0160277_31	Structural annotation	PF20037	NA	NA
UHGV-0160277_33	PHROG	phrog_824	NA	unknown function
UHGV-0160277_33	UniRef90	UniRef90_H5XZW8	VRR-NUC domain-containing protein	NA
UHGV-0160277_33	eggNOG-mapper	411470.RUMGNA_02049	VRR-NUC domain	NA
UHGV-0160277_33	Pfam	PF08774	VRR-NUC domain	VRR_NUC
UHGV-0160277_34	PHROG	phrog_3584	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0160277_34	UniRef90	UniRef90_I2E8X7	Gp31	NA
UHGV-0160277_34	eggNOG-mapper	1415775.U729_1544	NA	NA
UHGV-0160277_34	Structural annotation	PF21578	NA	NA
UHGV-0160277_37	PHROG	phrog_15609	NA	unknown function
UHGV-0160277_37	UniRef90	UniRef90_UPI001246A313	NA	NA
UHGV-0160277_37	eggNOG-mapper	1226322.HMPREF1545_00098	NA	NA
UHGV-0160277_37	Pfam	PF11300	NA	DUF3102
UHGV-0160277_37	COG	COG2433	Possible nuclease of RNase H fold, RuvC/YqgF family	NA
UHGV-0160277_37	Structural annotation	PF11300, PF07321, NF038070	NA	NA
UHGV-0160277_38	PHROG	phrog_8470	NA	unknown function
UHGV-0160277_38	UniRef90	UniRef90_UPI001875A728	PcfJ domain-containing protein	NA
UHGV-0160277_38	eggNOG-mapper	1157490.EL26_01845	PcfJ-like protein	NA
UHGV-0160277_38	Pfam	PF14284	PcfJ-like protein	PcfJ
UHGV-0160277_38	Structural annotation	PF14284	NA	NA
UHGV-0160277_39	UniRef90	UniRef90_UPI000FD875FF	Cas9 inhibitor AcrIIA9 family protein	NA
UHGV-0160277_39	eggNOG-mapper	913865.DOT_1302	NA	NA
UHGV-0160277_39	Pfam	PF14058	PcfK-like protein	PcfK
UHGV-0160277_39	Structural annotation	PF14058	NA	NA
UHGV-0160277_40	PHROG	phrog_24368	NA	unknown function
UHGV-0160277_40	eggNOG-mapper	742740.HMPREF9474_04313	NA	NA
UHGV-0160277_44	UniRef90	UniRef90_UPI00163A3CDC	helix-turn-helix domain-containing protein	NA
UHGV-0160277_44	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0160277_44	Structural annotation	PF05339, NF041951, COG1396	NA	NA
UHGV-0160277_45	KOfam	K22299	rghR; HTH-type transcriptional regulator, competence development regulator	NA
UHGV-0160277_45	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0160277_45	UniRef90	UniRef90_UPI0018C69716	helix-turn-helix domain-containing protein	NA
UHGV-0160277_45	eggNOG-mapper	1121918.ARWE01000001_gene3373	Helix-turn-helix domain protein	NA
UHGV-0160277_45	PADLOC	retron_type_VI_hth_cluster2_1	NA	Retron
UHGV-0160277_45	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0160277_45	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-0160277_45	Structural annotation	PF12844, MF_00535, NF041951, COG1476	NA	NA
UHGV-0160277_46	KOfam	K02342	dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]	NA
UHGV-0160277_46	PHROG	phrog_192	DNA polymerase exonuclease subunit	DNA, RNA and nucleotide metabolism
UHGV-0160277_46	UniRef90	UniRef90_A0A072YJ31	BRCT domain-containing protein	NA
UHGV-0160277_46	eggNOG-mapper	1443122.Z958_08595	3' exoribonuclease, RNase T-like	NA
UHGV-0160277_46	PADLOC	cd06127	CAS-I,CAS-II,CAS-III,CAS-IV,CAS-V,CAS-VI; associated	CRISPR-CAS
UHGV-0160277_46	Pfam	PF00929	Exonuclease	RNase_T
UHGV-0160277_46	Pfam	PF00533	BRCA1 C Terminus (BRCT) domain	BRCT
UHGV-0160277_46	COG	COG0272	NAD-dependent DNA ligase	NA
UHGV-0160277_46	Structural annotation	PF00929, PF00533, MF_00157, NF005289, COG0847	NA	NA
UHGV-0160277_47	KOfam	K06400	spoIVCA; site-specific DNA recombinase	NA
UHGV-0160277_47	PHROG	phrog_95	integrase	integration and excision
UHGV-0160277_47	UniRef90	UniRef90_A0A4Z0YBU8	Recombinase	NA
UHGV-0160277_47	eggNOG-mapper	1128398.Curi_c22150	Resolvase, N terminal domain	NA
UHGV-0160277_47	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-0160277_47	Pfam	PF07508	Recombinase	Recombinase
UHGV-0160277_47	Pfam	PF13408	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
UHGV-0160277_47	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-0160277_47	Structural annotation	PF07508, PF00239, NF041201, COG1961	NA	NA