UHGV-0160290

Genome information

Genome length 27,394 bps

CDS count 37

Completeness 77.86% (medium-quality)

geNomad score 0.9757

Prediction confidence Confident

Genome information
Genome ID	UHGV-0160290
vOTU ID	vOTU-016522
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_491971
BioSample	NA
Country	Netherlands
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	77.86% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	19
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9757
Virus hallmark genes (geNomad)	9
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	42.04
Jumbo phage	No

Genome content
Genome length	27,394 bps
GC content	40.20%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	37
CDS density	93.47%
Average CDS length	694.95 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0160290_3	KOfam	K03497	parB, spo0J; ParB family transcriptional regulator, chromosome partitioning protein	NA
UHGV-0160290_3	PHROG	phrog_6218	ParB-like partition protein	DNA, RNA and nucleotide metabolism
UHGV-0160290_3	UniRef90	UniRef90_UPI000E47CAB6	ParB/RepB/Spo0J family partition protein	NA
UHGV-0160290_3	eggNOG-mapper	1408437.JNJN01000030_gene1074	Belongs to the ParB family	NA
UHGV-0160290_3	Pfam	PF02195	ParB/Sulfiredoxin domain	ParBc
UHGV-0160290_3	NCBIFam	TIGR00180.1	ParB/RepB/Spo0J family partition protein	NA
UHGV-0160290_3	COG	COG0710	3-dehydroquinate dehydratase	NA
UHGV-0160290_3	Structural annotation	PF18579, MF_02015, TIGR00180, COG1475	NA	NA
UHGV-0160290_4	KOfam	K03427	hsdM; type I restriction enzyme M protein [EC:2.1.1.72]	NA
UHGV-0160290_4	PHROG	phrog_6380	DNA methyltransferase	other
UHGV-0160290_4	UniRef90	UniRef90_UPI001B3C6DA9	N-6 DNA methylase	NA
UHGV-0160290_4	eggNOG-mapper	1444306.JFZC01000034_gene2643	type I restriction-modification system	NA
UHGV-0160290_4	PADLOC	MTase_I_00005	Type I methyltransferase	RM
UHGV-0160290_4	Pfam	PF02384	N-6 DNA Methylase	N6_Mtase
UHGV-0160290_4	COG	COG0286	Type I restriction-modification system, DNA methylase subunit	NA
UHGV-0160290_5	PHROG	phrog_6380	DNA methyltransferase	other
UHGV-0160290_5	UniRef90	UniRef90_G9R0Z5	N6_Mtase domain-containing protein	NA
UHGV-0160290_5	eggNOG-mapper	1111134.HMPREF1253_0397	site-specific DNA-methyltransferase (adenine-specific) activity	NA
UHGV-0160290_5	COG	COG0286	Type I restriction-modification system, DNA methylase subunit	NA
UHGV-0160290_6	PHROG	phrog_24518	NA	unknown function
UHGV-0160290_6	eggNOG-mapper	1519439.JPJG01000077_gene922	NA	NA
UHGV-0160290_7	PHROG	phrog_824	NA	unknown function
UHGV-0160290_7	UniRef90	UniRef90_A0A3D3D6C6	VRR-NUC domain-containing protein	NA
UHGV-0160290_7	eggNOG-mapper	397288.C806_00096	VRR_NUC	NA
UHGV-0160290_7	Pfam	PF08774	VRR-NUC domain	VRR_NUC
UHGV-0160290_7	Structural annotation	PF08774	NA	NA
UHGV-0160290_9	PHROG	phrog_2118	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0160290_9	UniRef90	UniRef90_A0A374DVG7	HNH endonuclease	NA
UHGV-0160290_9	eggNOG-mapper	610130.Closa_0730	HNH endonuclease	NA
UHGV-0160290_9	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0160290_9	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0160290_9	Structural annotation	TIGR02646, COG1403	NA	NA
UHGV-0160290_10	PHROG	phrog_8684	NA	unknown function
UHGV-0160290_10	UniRef90	UniRef90_A0A374DV44	YopX domain-containing protein	NA
UHGV-0160290_10	eggNOG-mapper	563031.HMPREF0666_01127	YopX protein	NA
UHGV-0160290_10	Pfam	PF09643	YopX protein	YopX
UHGV-0160290_10	NCBIFam	TIGR01671.1	phage conserved hypothetical protein TIGR01671	NA
UHGV-0160290_10	Structural annotation	PF09643, TIGR01671	NA	NA
UHGV-0160290_13	PHROG	phrog_3584	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0160290_13	eggNOG-mapper	1235800.C819_00515	NA	NA
UHGV-0160290_13	Structural annotation	PF21578, NF041486	NA	NA
UHGV-0160290_14	PHROG	phrog_31049	NA	unknown function
UHGV-0160290_14	eggNOG-mapper	431943.CKL_4074	NA	NA
UHGV-0160290_14	Structural annotation	TIGR01636	NA	NA
UHGV-0160290_15	PHROG	phrog_119	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0160290_15	UniRef90	UniRef90_A0A412ULY9	HNH endonuclease	NA
UHGV-0160290_15	eggNOG-mapper	1158607.UAU_01026	HNH endonuclease	NA
UHGV-0160290_15	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0160290_15	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0160290_16	PHROG	phrog_5110	terminase small subunit	head and packaging
UHGV-0160290_16	UniRef90	UniRef90_A0A1M5U1D5	Phage terminase, small subunit	NA
UHGV-0160290_16	eggNOG-mapper	86416.Clopa_0336	NA	NA
UHGV-0160290_16	Pfam	PF05119	Phage terminase, small subunit	Terminase_4
UHGV-0160290_16	Structural annotation	PF05119, TIGR01558, COG3747	NA	NA
UHGV-0160290_17	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0160290_17	UniRef90	UniRef90_A0A412UM03	Terminase large subunit	NA
UHGV-0160290_17	eggNOG-mapper	86416.Clopa_0337	Phage Terminase	NA
UHGV-0160290_17	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0160290_17	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0160290_17	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0160290_17	Structural annotation	PF20441, PF03354, MF_04146, TIGR01547, COG4626	NA	NA
UHGV-0160290_18	PHROG	phrog_12	portal protein	head and packaging
UHGV-0160290_18	UniRef90	UniRef90_A0A412ULV9	Phage portal protein	NA
UHGV-0160290_18	eggNOG-mapper	1415774.U728_1254	Phage portal protein	NA
UHGV-0160290_18	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0160290_18	NCBIFam	TIGR01537.1	phage portal protein	NA
UHGV-0160290_18	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0160290_18	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-0160290_19	KOfam	K01358	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	NA
UHGV-0160290_19	PHROG	phrog_94	head maturation protease	head and packaging
UHGV-0160290_19	UniRef90	UniRef90_A0A412ULU1	ATP-dependent Clp protease proteolytic subunit	NA
UHGV-0160290_19	eggNOG-mapper	86416.Clopa_0340	Belongs to the peptidase S14 family	NA
UHGV-0160290_19	Pfam	PF00574	Clp protease	CLP_protease
UHGV-0160290_19	COG	COG0740	ATP-dependent protease ClpP, protease subunit	NA
UHGV-0160290_19	Structural annotation	PF00574, MF_00444, NF011090, COG0740	NA	NA
UHGV-0160290_20	PHROG	phrog_10	major head protein	head and packaging
UHGV-0160290_20	UniRef90	UniRef90_A0A412ULW9	Phage major capsid protein	NA
UHGV-0160290_20	eggNOG-mapper	1211817.CCAT010000053_gene2132	Phage capsid family	NA
UHGV-0160290_20	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0160290_20	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0160290_20	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0160290_20	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0160290_21	PHROG	phrog_749	NA	unknown function
UHGV-0160290_21	UniRef90	UniRef90_A0A1G5CMX8	Phage gp6-like head-tail connector protein	NA
UHGV-0160290_21	eggNOG-mapper	1211817.CCAT010000053_gene2133	NA	NA
UHGV-0160290_22	PHROG	phrog_19734	NA	unknown function
UHGV-0160290_22	UniRef90	UniRef90_UPI00057FE645	phage head closure protein	NA
UHGV-0160290_22	eggNOG-mapper	86416.Clopa_0343	NA	NA
UHGV-0160290_22	NCBIFam	TIGR01563.1	phage head closure protein	NA
UHGV-0160290_22	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0160290_23	eggNOG-mapper	879305.HMPREF9290_0134	NA	NA
UHGV-0160290_23	Structural annotation	PF05657, MF_00281, COG0016	NA	NA
UHGV-0160290_24	UniRef90	UniRef90_UPI000E5564A4	HK97 gp10 family phage protein	NA
UHGV-0160290_24	eggNOG-mapper	1235792.C808_00089	Bacteriophage HK97-gp10, putative tail-component	NA
UHGV-0160290_24	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-0160290_24	Structural annotation	TIGR01725	NA	NA
UHGV-0160290_25	PHROG	phrog_88	major tail protein	tail
UHGV-0160290_25	UniRef90	UniRef90_A0A1G5CNS8	Phage major tail protein, phi13 family	NA
UHGV-0160290_25	eggNOG-mapper	1321782.HMPREF1986_01362	phage major tail protein, phi13 family	NA
UHGV-0160290_25	NCBIFam	TIGR01603.1	major tail protein	NA
UHGV-0160290_25	Structural annotation	PF06488, TIGR01603, COG3498	NA	NA
UHGV-0160290_26	Structural annotation	PF11836	NA	NA
UHGV-0160290_27	KOfam	K20283	GOLGA4; golgin subfamily A member 4	NA
UHGV-0160290_27	PHROG	phrog_1272	tail length tape measure protein	tail
UHGV-0160290_27	UniRef90	UniRef90_A0A412ULX0	PhageMin_Tail domain-containing protein	NA
UHGV-0160290_27	eggNOG-mapper	588581.Cpap_1264	Tail tape measure protein, TP901 family	NA
UHGV-0160290_27	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-0160290_27	COG	COG5280	Phage-related minor tail protein	NA
UHGV-0160290_27	Structural annotation	PF10145, TIGR01760, COG5280	NA	NA
UHGV-0160290_28	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-0160290_28	UniRef90	UniRef90_A0A1G5CPA2	Phage-related protein	NA
UHGV-0160290_28	eggNOG-mapper	1160721.RBI_I01575	Phage tail protein	NA
UHGV-0160290_28	COG	COG4722	Phage-related protein YomH	NA
UHGV-0160290_28	Structural annotation	PF20195, TIGR01633, COG4722	NA	NA
UHGV-0160290_29	PHROG	phrog_1067	minor head protein	head and packaging
UHGV-0160290_29	UniRef90	UniRef90_A0A348ZBV6	Prophage_tail domain-containing protein	NA
UHGV-0160290_29	eggNOG-mapper	1462527.CCDM010000003_gene3730	gp58-like protein	NA
UHGV-0160290_29	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-0160290_29	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-0160290_29	COG	COG1511	NA	NA
UHGV-0160290_29	Structural annotation	PF14594, TIGR01665, COG4926	NA	NA
UHGV-0160290_30	Structural annotation	PF10651, PF08931, TIGR02268	NA	NA
UHGV-0160290_32	UniRef90	UniRef90_A0A374MYZ3	Branched-chain amino acid ABC transporter permease	NA
UHGV-0160290_32	eggNOG-mapper	1007096.BAGW01000032_gene1580	NA	NA
UHGV-0160290_33	PHROG	phrog_881	holin	lysis
UHGV-0160290_33	UniRef90	UniRef90_A0A4Q7P349	Dp-1 family holin	NA
UHGV-0160290_33	eggNOG-mapper	742740.HMPREF9474_02251	Putative phage holin Dp-1	NA
UHGV-0160290_33	Pfam	PF16938	Putative phage holin Dp-1	Phage_holin_Dp1
UHGV-0160290_33	Structural annotation	PF16938	NA	NA
UHGV-0160290_34	PHROG	phrog_774	NA	unknown function
UHGV-0160290_34	eggNOG-mapper	397290.C810_05225	NA	NA
UHGV-0160290_35	KOfam	K01447	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0160290_35	PHROG	phrog_20388	endolysin	lysis
UHGV-0160290_35	UniRef90	UniRef90_A0A374N1L8	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0160290_35	eggNOG-mapper	1203606.HMPREF1526_00253	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0160290_35	Pfam	PF01510	N-acetylmuramoyl-L-alanine amidase	Amidase_2
UHGV-0160290_35	Pfam	PF01471	Putative peptidoglycan binding domain	PG_binding_1
UHGV-0160290_35	COG	COG0860	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0160290_35	Structural annotation	PF01510, PF01476, PF15591, MF_02014, MF_04111, MF_01354, NF008758, NF010723, TIGR00405, COG3023, COG5004, COG2139	NA	NA
UHGV-0160290_36	KOfam	K23518	MACROD, ymdB; O-acetyl-ADP-ribose deacetylase [EC:3.1.1.106]	NA
UHGV-0160290_36	UniRef90	UniRef90_A0A2N0UKU7	O-acetyl-ADP-ribose deacetylase	NA
UHGV-0160290_36	eggNOG-mapper	500632.CLONEX_01035	domain protein	NA
UHGV-0160290_36	Pfam	PF01661	Macro domain	Macro
UHGV-0160290_36	NCBIFam	NF001664.0	O-acetyl-ADP-ribose deacetylase	NA
UHGV-0160290_36	COG	COG2110	O-acetyl-ADP-ribose deacetylase (regulator of RNase III), contains Macro domain	NA
UHGV-0160290_36	Structural annotation	PF01661, PF13560, MF_01205, NF001660, NF041951, COG2110, COG3655	NA	NA
UHGV-0160290_37	PHROG	phrog_7371	NA	unknown function
UHGV-0160290_37	UniRef90	UniRef90_A0A2N0UQY2	VWFA domain-containing protein	NA
UHGV-0160290_37	eggNOG-mapper	411467.BACCAP_02989	NA	NA
UHGV-0160290_37	COG	COG2304	Secreted protein containing bacterial Ig-like domain and vWFA domain	NA
UHGV-0160290_37	Structural annotation	PF00092, MF_01340, NF010238, COG4245	NA	NA