UHGV-0160307

Genome information

Genome length 27,858 bps

CDS count 46

Completeness 65.96% (medium-quality)

geNomad score 0.9814

Prediction confidence Confident

Genome information
Genome ID	UHGV-0160307
vOTU ID	vOTU-022209
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_495319
BioSample	SAMN06110429
Country	Netherlands
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	65.96% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	14
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9814
Virus hallmark genes (geNomad)	9
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	35.33
Jumbo phage	No

Genome content
Genome length	27,858 bps
GC content	55.52%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	46
CDS density	91.00%
Average CDS length	554.35 bps
tRNA count	2
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0160307_1	eggNOG-mapper	411483.FAEPRAA2165_00757	NA	NA
UHGV-0160307_2	UniRef90	UniRef90_A0A6A8KSZ5	XkdX family protein	NA
UHGV-0160307_2	eggNOG-mapper	718252.FP2_16990	Phage uncharacterised protein (Phage_XkdX)	NA
UHGV-0160307_2	Pfam	PF09693	Phage uncharacterised protein (Phage_XkdX)	Phage_XkdX
UHGV-0160307_2	Structural annotation	PF09693	NA	NA
UHGV-0160307_3	PHROG	phrog_29248	NA	unknown function
UHGV-0160307_4	PHROG	phrog_10993	Hoc-like head decoration	head and packaging
UHGV-0160307_4	UniRef90	UniRef90_A0A1Q6KPN8	NA	NA
UHGV-0160307_4	eggNOG-mapper	718252.FP2_16970	NA	NA
UHGV-0160307_4	Pfam	PF19789	NA	DUF6273
UHGV-0160307_4	Structural annotation	PF19789, PF18911	NA	NA
UHGV-0160307_6	PHROG	phrog_3558	tail protein	tail
UHGV-0160307_6	UniRef90	UniRef90_A0A8B3ALT8	Prophage_tail domain-containing protein	NA
UHGV-0160307_6	eggNOG-mapper	411460.RUMTOR_00484	Prophage endopeptidase tail	NA
UHGV-0160307_6	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-0160307_6	COG	COG4926	Phage-related protein	NA
UHGV-0160307_6	Structural annotation	PF14594, TIGR01665, COG4379	NA	NA
UHGV-0160307_7	UniRef90	UniRef90_A0A7G9WF98	MtfA protein	NA
UHGV-0160307_7	eggNOG-mapper	1123075.AUDP01000020_gene1523	phage tail	NA
UHGV-0160307_7	COG	COG4722	Phage-related protein YomH	NA
UHGV-0160307_7	Structural annotation	PF05709, TIGR01633, COG4722	NA	NA
UHGV-0160307_8	PHROG	phrog_9959	tail length tape measure protein	tail
UHGV-0160307_8	UniRef90	UniRef90_UPI001C038824	tape measure protein	NA
UHGV-0160307_8	eggNOG-mapper	1492737.FEM08_12070	tape measure	NA
UHGV-0160307_8	Pfam	PF20155	Tape measure protein	TMP_3
UHGV-0160307_8	NCBIFam	TIGR02675.1	tape measure protein	NA
UHGV-0160307_8	COG	COG3941	Phage tail tape-measure protein, controls tail length	NA
UHGV-0160307_8	Structural annotation	PF20155, TIGR01760, COG3941	NA	NA
UHGV-0160307_11	PHROG	phrog_885	major tail protein	tail
UHGV-0160307_11	eggNOG-mapper	1111121.HMPREF1247_0789	NA	NA
UHGV-0160307_11	Structural annotation	PF06488, TIGR01603, COG5437	NA	NA
UHGV-0160307_12	Structural annotation	PF13554	NA	NA
UHGV-0160307_13	PHROG	phrog_17977	NA	unknown function
UHGV-0160307_13	UniRef90	UniRef90_A0A844DHJ8	Phage head closure protein	NA
UHGV-0160307_13	Structural annotation	PF07405, TIGR01563, COG5614	NA	NA
UHGV-0160307_15	PHROG	phrog_544	major head protein	head and packaging
UHGV-0160307_15	UniRef90	UniRef90_R0BKA1	S-l_SbsC_C domain-containing protein	NA
UHGV-0160307_15	eggNOG-mapper	476272.RUMHYD_01776	NA	NA
UHGV-0160307_15	Structural annotation	PF03864, MF_04119, TIGR04387, COG4834	NA	NA
UHGV-0160307_16	Structural annotation	PF06810	NA	NA
UHGV-0160307_17	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0160307_17	UniRef90	UniRef90_A0A6N7TNP6	HK97 gp10 family phage protein	NA
UHGV-0160307_17	eggNOG-mapper	929506.CbC4_1219	NA	NA
UHGV-0160307_17	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-0160307_17	Structural annotation	PF20039, TIGR01725, COG5005	NA	NA
UHGV-0160307_18	KOfam	K07741	antB; anti-repressor protein	NA
UHGV-0160307_18	PHROG	phrog_130	anti-repressor Ant	transcription regulation
UHGV-0160307_18	UniRef90	UniRef90_A0A396LJD2	Bro-N domain-containing protein	NA
UHGV-0160307_18	eggNOG-mapper	663952.SDD27957_09050	COG3617 Prophage antirepressor	NA
UHGV-0160307_18	Pfam	PF02498	BRO family, N-terminal domain	Bro-N
UHGV-0160307_18	Pfam	PF03374	Phage antirepressor protein KilAC domain	ANT
UHGV-0160307_18	COG	COG3617	Prophage antirepressor	NA
UHGV-0160307_18	Structural annotation	PF02498, PF03374, TIGR02681, COG3617	NA	NA
UHGV-0160307_19	Structural annotation	PF07342	NA	NA
UHGV-0160307_20	KOfam	K07727	K07727; putative transcriptional regulator	NA
UHGV-0160307_20	PHROG	phrog_3	transcriptional repressor	transcription regulation
UHGV-0160307_20	UniRef90	UniRef90_UPI001D0E8318	helix-turn-helix transcriptional regulator	NA
UHGV-0160307_20	eggNOG-mapper	1117108.PAALTS15_13457	Transcriptional regulator	NA
UHGV-0160307_20	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-0160307_20	COG	COG3655	DNA-binding transcriptional regulator, XRE family	NA
UHGV-0160307_20	Structural annotation	PF13443, NF000090, COG3655	NA	NA
UHGV-0160307_22	PHROG	phrog_2468	head morphogenesis	head and packaging
UHGV-0160307_22	UniRef90	UniRef90_A0A6N7TLR7	Phage_Mu_F domain-containing protein	NA
UHGV-0160307_22	eggNOG-mapper	1504822.CCNO01000013_gene286	cell adhesion	NA
UHGV-0160307_22	Pfam	PF04233	Phage Mu protein F like protein	Phage_Mu_F
UHGV-0160307_22	COG	COG2369	NA	NA
UHGV-0160307_22	Structural annotation	PF04233, TIGR01641, COG2369	NA	NA
UHGV-0160307_23	PHROG	phrog_64	portal protein	head and packaging
UHGV-0160307_23	UniRef90	UniRef90_A0A6N7TNT3	Phage portal protein	NA
UHGV-0160307_23	eggNOG-mapper	642492.Clole_2764	phage portal protein, SPP1	NA
UHGV-0160307_23	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0160307_23	Structural annotation	PF05133, MF_04120, TIGR01538, COG3567	NA	NA
UHGV-0160307_24	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0160307_24	PHROG	phrog_10250	NA	unknown function
UHGV-0160307_24	UniRef90	UniRef90_A0A844D8I4	PBSX family phage terminase large subunit	NA
UHGV-0160307_24	eggNOG-mapper	411490.ANACAC_00783	Phage terminase, large subunit, PBSX family	NA
UHGV-0160307_24	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-0160307_24	Pfam	PF17289	Terminase RNaseH-like domain	Terminase_6C
UHGV-0160307_24	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0160307_24	COG	COG1783	Phage terminase large subunit	NA
UHGV-0160307_24	Structural annotation	PF04466, PF20454, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-0160307_25	PHROG	phrog_606	terminase small subunit	head and packaging
UHGV-0160307_25	UniRef90	UniRef90_UPI001C02EFD1	DNA-packaging protein	NA
UHGV-0160307_25	eggNOG-mapper	397290.C810_05185	DNA-packaging protein gp3	NA
UHGV-0160307_25	Pfam	PF16677	DNA-packaging protein gp3	GP3_package
UHGV-0160307_25	Structural annotation	PF16677	NA	NA
UHGV-0160307_26	KOfam	K07741	antB; anti-repressor protein	NA
UHGV-0160307_26	PHROG	phrog_130	anti-repressor Ant	transcription regulation
UHGV-0160307_26	UniRef90	UniRef90_UPI001C3C1005	Phage antirepressor KilAC domain-containing protein	NA
UHGV-0160307_26	eggNOG-mapper	568816.Acin_1403	Phage antirepressor protein KilAC domain	NA
UHGV-0160307_26	Pfam	PF02498	BRO family, N-terminal domain	Bro-N
UHGV-0160307_26	Pfam	PF03374	Phage antirepressor protein KilAC domain	ANT
UHGV-0160307_26	COG	COG3617	Prophage antirepressor	NA
UHGV-0160307_28	UniRef90	UniRef90_UPI000C7592F8	ribbon-helix-helix protein, CopG family	NA
UHGV-0160307_28	eggNOG-mapper	663952.SDD27957_09060	NA	NA
UHGV-0160307_28	Pfam	PF01402	Ribbon-helix-helix protein, copG family	RHH_1
UHGV-0160307_28	Structural annotation	PF01402, NF041793, COG3905	NA	NA
UHGV-0160307_29	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0160307_29	Structural annotation	PF07374, MF_00245, TIGR01636, COG2739	NA	NA
UHGV-0160307_31	KOfam	K01160	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	NA
UHGV-0160307_31	PHROG	phrog_34	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0160307_31	UniRef90	UniRef90_A0A6N7TND6	RusA family crossover junction endodeoxyribonuclease	NA
UHGV-0160307_31	eggNOG-mapper	875454.BAEW01000002_gene491	Endodeoxyribonuclease RusA	NA
UHGV-0160307_31	Pfam	PF05866	Endodeoxyribonuclease RusA	RusA
UHGV-0160307_31	COG	COG4570	Holliday junction resolvase RusA (prophage-encoded endonuclease)	NA
UHGV-0160307_31	Structural annotation	PF05866, NF007305, COG4570	NA	NA
UHGV-0160307_36	Structural annotation	PF01775, MF_00273, NF001981, COG2157	NA	NA
UHGV-0160307_37	Structural annotation	PF11417	NA	NA
UHGV-0160307_38	KOfam	K02086	dnaD; DNA replication protein	NA
UHGV-0160307_38	PHROG	phrog_186	DnaD-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0160307_38	UniRef90	UniRef90_A0A6N7TLH4	DnaD domain protein	NA
UHGV-0160307_38	eggNOG-mapper	877411.JMMA01000002_gene2292	NA	NA
UHGV-0160307_38	Pfam	PF19808	NA	DUF6291
UHGV-0160307_38	Pfam	PF07261	Replication initiation and membrane attachment	DnaB_2
UHGV-0160307_38	NCBIFam	TIGR01446.1	DnaD domain protein	NA
UHGV-0160307_38	Structural annotation	PF19808, PF07261, TIGR01446, COG3935	NA	NA
UHGV-0160307_39	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0160307_39	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0160307_39	UniRef90	UniRef90_D4K451	Single-stranded DNA-binding protein	NA
UHGV-0160307_39	eggNOG-mapper	718252.FP2_06770	Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism	NA
UHGV-0160307_39	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0160307_39	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0160307_39	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0160307_39	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0160307_39	Structural annotation	PF00436, MF_00984, NF005241, COG0629	NA	NA
UHGV-0160307_40	PHROG	phrog_7838	exonuclease	DNA, RNA and nucleotide metabolism
UHGV-0160307_40	UniRef90	UniRef90_A0A8D9UGW3	DNA repair protein RAD52-like protein	NA
UHGV-0160307_40	eggNOG-mapper	742767.HMPREF9456_02052	NA	NA
UHGV-0160307_40	Structural annotation	PF04098, TIGR00607, COG4380	NA	NA
UHGV-0160307_42	Structural annotation	PF06718	NA	NA
UHGV-0160307_46	Structural annotation	PF10743, NF033787	NA	NA