UHGV-0160357

Genome information

Genome length 28,979 bps

CDS count 41

Completeness 76.09% (medium-quality)

geNomad score 0.9693

Prediction confidence Confident

Genome information
Genome ID	UHGV-0160357
vOTU ID	vOTU-027970
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_446357
BioSample	SAMN05971593
Country	United States
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	76.09% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	11
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9693
Virus hallmark genes (geNomad)	12
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	39.56
Jumbo phage	No

Genome content
Genome length	28,979 bps
GC content	55.62%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	41
CDS density	91.24%
Average CDS length	648.81 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0160357_1	PHROG	phrog_33570	NA	unknown function
UHGV-0160357_1	UniRef90	UniRef90_A0A352RPN3	Phage tail protein	NA
UHGV-0160357_1	eggNOG-mapper	742738.HMPREF9460_01378	tape measure	NA
UHGV-0160357_1	Pfam	PF20155	Tape measure protein	TMP_3
UHGV-0160357_1	NCBIFam	TIGR02675.1	tape measure protein	NA
UHGV-0160357_1	COG	COG3941	Phage tail tape-measure protein, controls tail length	NA
UHGV-0160357_1	Structural annotation	PF20155, TIGR01760, COG3941	NA	NA
UHGV-0160357_3	PHROG	phrog_389	tail protein XkdN-like	tail
UHGV-0160357_3	UniRef90	UniRef90_I4AEJ4	Phage XkdN-like protein	NA
UHGV-0160357_3	eggNOG-mapper	1121334.KB911073_gene1866	Phage XkdN-like tail assembly chaperone protein, TAC	NA
UHGV-0160357_3	Pfam	PF08890	Phage XkdN-like tail assembly chaperone protein, TAC	Phage_TAC_5
UHGV-0160357_3	Structural annotation	PF08890	NA	NA
UHGV-0160357_4	PHROG	phrog_365	tail protein	tail
UHGV-0160357_4	UniRef90	UniRef90_A0A498CWH7	Phage portal protein	NA
UHGV-0160357_4	eggNOG-mapper	1121334.KB911073_gene1865	Phage tail tube protein	NA
UHGV-0160357_4	Pfam	PF09393	Phage tail tube protein	DUF2001
UHGV-0160357_4	Structural annotation	PF09393, TIGR02241, COG3498	NA	NA
UHGV-0160357_5	PHROG	phrog_1480	tail sheath	tail
UHGV-0160357_5	UniRef90	UniRef90_A0A2N2CMT4	Phage tail sheath protein	NA
UHGV-0160357_5	eggNOG-mapper	1297617.JPJD01000034_gene682	Phage tail sheath protein subtilisin-like domain	NA
UHGV-0160357_5	Pfam	PF04984	Phage tail sheath protein subtilisin-like domain	Phage_sheath_1
UHGV-0160357_5	Pfam	PF17482	Phage tail sheath C-terminal domain	Phage_sheath_1C
UHGV-0160357_5	Structural annotation	PF10758, COG3497	NA	NA
UHGV-0160357_6	PHROG	phrog_525	NA	unknown function
UHGV-0160357_6	eggNOG-mapper	1121334.KB911073_gene1863	NA	NA
UHGV-0160357_6	Pfam	PF20765	NA	DUF6838
UHGV-0160357_6	Structural annotation	PF20765, COG5003	NA	NA
UHGV-0160357_7	PHROG	phrog_38627	NA	unknown function
UHGV-0160357_7	eggNOG-mapper	1291050.JAGE01000001_gene2925	NA	NA
UHGV-0160357_7	Structural annotation	PF17395, TIGR01725	NA	NA
UHGV-0160357_8	PHROG	phrog_29848	NA	unknown function
UHGV-0160357_8	eggNOG-mapper	742738.HMPREF9460_01370	NA	NA
UHGV-0160357_8	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0160357_9	Pfam	PF05135	Phage gp6-like head-tail connector protein	Phage_connect_1
UHGV-0160357_9	NCBIFam	TIGR01560.2	head-tail connector protein	NA
UHGV-0160357_9	Structural annotation	PF05135, TIGR01560	NA	NA
UHGV-0160357_10	eggNOG-mapper	1007096.BAGW01000012_gene2379	NA	NA
UHGV-0160357_10	Structural annotation	PF03898, NF033675	NA	NA
UHGV-0160357_11	PHROG	phrog_10	major head protein	head and packaging
UHGV-0160357_11	UniRef90	UniRef90_UPI00164C4915	phage major capsid protein	NA
UHGV-0160357_11	eggNOG-mapper	742738.HMPREF9460_00876	Phage capsid family	NA
UHGV-0160357_11	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0160357_11	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0160357_11	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0160357_11	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0160357_12	KOfam	K01358	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	NA
UHGV-0160357_12	PHROG	phrog_94	head maturation protease	head and packaging
UHGV-0160357_12	UniRef90	UniRef90_UPI000F6378AF	Clp protease ClpP	NA
UHGV-0160357_12	eggNOG-mapper	649639.Bcell_2731	Serine dehydrogenase proteinase	NA
UHGV-0160357_12	Pfam	PF00574	Clp protease	CLP_protease
UHGV-0160357_12	COG	COG0740	ATP-dependent protease ClpP, protease subunit	NA
UHGV-0160357_12	Structural annotation	PF00574, MF_00444, TIGR00493, COG0740	NA	NA
UHGV-0160357_13	PHROG	phrog_12	portal protein	head and packaging
UHGV-0160357_13	UniRef90	UniRef90_UPI000F640FA5	phage portal protein	NA
UHGV-0160357_13	eggNOG-mapper	693746.OBV_20020	Phage portal protein	NA
UHGV-0160357_13	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0160357_13	NCBIFam	TIGR01537.1	phage portal protein	NA
UHGV-0160357_13	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0160357_13	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-0160357_15	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0160357_15	UniRef90	UniRef90_A0A8J6MA49	Terminase large subunit	NA
UHGV-0160357_15	eggNOG-mapper	693746.OBV_20000	Phage terminase-like protein large subunit	NA
UHGV-0160357_15	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0160357_15	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0160357_15	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0160357_15	Structural annotation	PF20441, PF03354, MF_04145, TIGR01547, COG4626	NA	NA
UHGV-0160357_16	PHROG	phrog_83	terminase small subunit	head and packaging
UHGV-0160357_16	UniRef90	UniRef90_UPI001C3B89FE	Phage terminase small subunit P27 family	NA
UHGV-0160357_16	eggNOG-mapper	742738.HMPREF9460_00871	phage terminase, small subunit	NA
UHGV-0160357_16	Pfam	PF05119	Phage terminase, small subunit	Terminase_4
UHGV-0160357_16	NCBIFam	TIGR01558.1	phage terminase small subunit P27 family	NA
UHGV-0160357_16	COG	COG3747	Phage terminase, small subunit	NA
UHGV-0160357_16	Structural annotation	PF05119, TIGR01558, COG3747	NA	NA
UHGV-0160357_17	KOfam	K07319	yhdJ; adenine-specific DNA-methyltransferase [EC:2.1.1.72]	NA
UHGV-0160357_17	PHROG	phrog_498	DNA methyltransferase	other
UHGV-0160357_17	UniRef90	UniRef90_UPI001C39D614	Site-specific DNA-methyltransferase	NA
UHGV-0160357_17	eggNOG-mapper	693746.OBV_19980	DNA methylase	NA
UHGV-0160357_17	PADLOC	MTase_II_00015	Type II methyltransferase	RM
UHGV-0160357_17	Pfam	PF02195	ParB/Sulfiredoxin domain	ParBc
UHGV-0160357_17	Pfam	PF01555	DNA methylase	N6_N4_Mtase
UHGV-0160357_17	COG	COG0863	DNA modification methylase	NA
UHGV-0160357_17	Structural annotation	PF01555, PF02195, MF_02015, MF_01872, NF010253, TIGR04285, COG0863, COG1475	NA	NA
UHGV-0160357_18	PHROG	phrog_144	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0160357_18	UniRef90	UniRef90_A0A8J6JIY3	HNH endonuclease	NA
UHGV-0160357_18	eggNOG-mapper	742738.HMPREF9460_00869	HNH endonuclease	NA
UHGV-0160357_18	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0160357_18	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0160357_18	Structural annotation	PF01844, COG1403	NA	NA
UHGV-0160357_20	PHROG	phrog_3584	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0160357_20	eggNOG-mapper	1203606.HMPREF1526_00985	NA	NA
UHGV-0160357_20	Structural annotation	PF01446, NF041486	NA	NA
UHGV-0160357_21	PHROG	phrog_2245	nucleoside triphosphate pyrophosphohydrolase	other
UHGV-0160357_21	UniRef90	UniRef90_A0A315Y0X2	MazG-like nucleotide pyrophosphohydrolase family protein	NA
UHGV-0160357_21	eggNOG-mapper	658655.HMPREF0988_00885	NA	NA
UHGV-0160357_24	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0160357_24	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0160357_24	UniRef90	UniRef90_UPI000F067C16	single-stranded DNA-binding protein	NA
UHGV-0160357_24	eggNOG-mapper	1408437.JNJN01000012_gene314	Single-stranded DNA-binding protein	NA
UHGV-0160357_24	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0160357_24	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0160357_24	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0160357_24	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0160357_24	Structural annotation	PF00436, MF_00984, NF005241, COG0629	NA	NA
UHGV-0160357_25	KOfam	K03497	parB, spo0J; ParB family transcriptional regulator, chromosome partitioning protein	NA
UHGV-0160357_25	PHROG	phrog_27290	NA	unknown function
UHGV-0160357_25	UniRef90	UniRef90_A0A1Y4LCZ9	HTH cro/C1-type domain-containing protein	NA
UHGV-0160357_25	eggNOG-mapper	1235792.C808_00610	ParB-like nuclease domain	NA
UHGV-0160357_25	Pfam	PF02195	ParB/Sulfiredoxin domain	ParBc
UHGV-0160357_25	COG	COG1475	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	NA
UHGV-0160357_25	Structural annotation	PF12961, PF02195, MF_02015, MF_00684, TIGR04285, NF003443, COG1475, COG3097	NA	NA
UHGV-0160357_26	KOfam	K03496	parA, soj; chromosome partitioning protein	NA
UHGV-0160357_26	PHROG	phrog_164	ParA-like partition protein	DNA, RNA and nucleotide metabolism
UHGV-0160357_26	UniRef90	UniRef90_UPI000F644887	ParA family protein	NA
UHGV-0160357_26	eggNOG-mapper	742738.HMPREF9460_00854	4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family	NA
UHGV-0160357_26	Pfam	PF13614	AAA domain	AAA_31
UHGV-0160357_26	COG	COG1192	ParA-like ATPase involved in chromosome/plasmid partitioning or cellulose biosynthesis protein BcsQ	NA
UHGV-0160357_26	Structural annotation	PF13614, MF_00533, TIGR03453, COG1192	NA	NA
UHGV-0160357_28	KOfam	K02314	dnaB; replicative DNA helicase [EC:5.6.2.3]	NA
UHGV-0160357_28	PHROG	phrog_19	DnaB-like replicative helicase	DNA, RNA and nucleotide metabolism
UHGV-0160357_28	UniRef90	UniRef90_UPI000F04DA06	AAA family ATPase	NA
UHGV-0160357_28	eggNOG-mapper	1203606.HMPREF1526_01325	Participates in initiation and elongation during chromosome replication	NA
UHGV-0160357_28	Pfam	PF00772	DnaB-like helicase N terminal domain	DnaB
UHGV-0160357_28	Pfam	PF03796	DnaB-like helicase C terminal domain	DnaB_C
UHGV-0160357_28	COG	COG0305	Replicative DNA helicase	NA
UHGV-0160357_28	Structural annotation	PF03796, PF00772, MF_04155, NF005240, COG0305	NA	NA
UHGV-0160357_29	PHROG	phrog_19658	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0160357_29	UniRef90	UniRef90_UPI0013E03EAA	helix-turn-helix domain-containing protein	NA
UHGV-0160357_29	eggNOG-mapper	891391.LAC30SC_06640	Helix-turn-helix domain	NA
UHGV-0160357_29	Pfam	PF13730	Helix-turn-helix domain	HTH_36
UHGV-0160357_29	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0160357_29	Structural annotation	PF13730, MF_01909, TIGR04176, COG3355	NA	NA
UHGV-0160357_31	PHROG	phrog_6499	transcriptional regulator	transcription regulation
UHGV-0160357_31	UniRef90	UniRef90_UPI000F05DEC6	helix-turn-helix transcriptional regulator	NA
UHGV-0160357_31	eggNOG-mapper	1196322.A370_04243	NA	NA
UHGV-0160357_31	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0160357_31	COG	COG1813	Archaeal ribosome-binding protein aMBF1, putative translation factor, contains Zn-ribbon and HTH domains	NA
UHGV-0160357_33	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0160357_33	UniRef90	UniRef90_UPI000F63DB52	helix-turn-helix domain-containing protein	NA
UHGV-0160357_33	eggNOG-mapper	1123302.KB904156_gene1485	Helix-turn-helix XRE-family like proteins	NA
UHGV-0160357_33	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0160357_33	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-0160357_33	Structural annotation	PF01381, NF041951, COG1476	NA	NA
UHGV-0160357_36	KOfam	K07729	K07729; putative transcriptional regulator	NA
UHGV-0160357_36	PHROG	phrog_5823	transcriptional regulator	transcription regulation
UHGV-0160357_36	UniRef90	UniRef90_UPI000F06B6E6	helix-turn-helix transcriptional regulator	NA
UHGV-0160357_36	eggNOG-mapper	35841.BT1A1_0230	Helix-turn-helix domain	NA
UHGV-0160357_36	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0160357_36	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-0160357_36	Structural annotation	PF01381, NF041951, COG1476	NA	NA
UHGV-0160357_37	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0160357_37	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0160357_37	UniRef90	UniRef90_UPI000F631265	helix-turn-helix domain-containing protein	NA
UHGV-0160357_37	eggNOG-mapper	1009370.ALO_12846	PFAM helix-turn-helix domain protein	NA
UHGV-0160357_37	PADLOC	retron_type_VI_hth_cluster2_1	NA	Retron
UHGV-0160357_37	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0160357_37	COG	COG1974	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	NA
UHGV-0160357_37	Structural annotation	PF01381, MF_00535, NF041951, COG1396	NA	NA
UHGV-0160357_38	KOfam	K02342	dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]	NA
UHGV-0160357_38	PHROG	phrog_192	DNA polymerase exonuclease subunit	DNA, RNA and nucleotide metabolism
UHGV-0160357_38	UniRef90	UniRef90_A0A417TMN9	BRCT domain-containing protein	NA
UHGV-0160357_38	eggNOG-mapper	545694.TREPR_3623	EXOIII	NA
UHGV-0160357_38	PADLOC	cd06127	CAS-I,CAS-II,CAS-III,CAS-IV,CAS-V,CAS-VI; associated	CRISPR-CAS
UHGV-0160357_38	Pfam	PF00929	Exonuclease	RNase_T
UHGV-0160357_38	NCBIFam	TIGR00573.1	exonuclease, DNA polymerase III, epsilon subunit family	NA
UHGV-0160357_38	COG	COG0272	NAD-dependent DNA ligase	NA
UHGV-0160357_39	eggNOG-mapper	697281.Mahau_0586	NA	NA
UHGV-0160357_41	KOfam	K06400	spoIVCA; site-specific DNA recombinase	NA
UHGV-0160357_41	PHROG	phrog_95	integrase	integration and excision
UHGV-0160357_41	UniRef90	UniRef90_UPI0013E012A9	recombinase family protein	NA
UHGV-0160357_41	eggNOG-mapper	1128398.Curi_c22150	Resolvase, N terminal domain	NA
UHGV-0160357_41	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-0160357_41	Pfam	PF07508	Recombinase	Recombinase
UHGV-0160357_41	Pfam	PF13408	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
UHGV-0160357_41	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-0160357_41	Structural annotation	PF07508, PF00239, NF041201, COG1961	NA	NA