UHGV-0160375

Genome information

Genome length 29,699 bps

CDS count 56

Completeness 65.89% (medium-quality)

geNomad score 0.9816

Prediction confidence Confident

Genome information
Genome ID	UHGV-0160375
vOTU ID	vOTU-027972
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_484041
BioSample	SAMN06110229
Country	Netherlands
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	65.89% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	16
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9816
Virus hallmark genes (geNomad)	5
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	35.07
Jumbo phage	No

Genome content
Genome length	29,699 bps
GC content	40.84%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	56
CDS density	85.11%
Average CDS length	454.98 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0160375_1	KOfam	K11641	natR; two-component system, LytTR family, response regulator NatR	NA
UHGV-0160375_1	eggNOG-mapper	632245.CLP_3247	response regulator	NA
UHGV-0160375_1	COG	COG3279	DNA-binding response regulator, LytR/AlgR family	NA
UHGV-0160375_4	PHROG	phrog_2967	transcriptional regulator	transcription regulation
UHGV-0160375_4	UniRef90	UniRef90_UPI001D029144	transcriptional regulator	NA
UHGV-0160375_4	eggNOG-mapper	457412.RSAG_00795	sequence-specific DNA binding	NA
UHGV-0160375_4	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0160375_4	Structural annotation	PF01381, NF007257, COG3655	NA	NA
UHGV-0160375_5	UniRef90	UniRef90_A0A396QAC5	NA	NA
UHGV-0160375_5	eggNOG-mapper	411470.RUMGNA_03231	NA	NA
UHGV-0160375_5	Pfam	PF05339	NA	DUF739
UHGV-0160375_5	COG	COG3655	DNA-binding transcriptional regulator, XRE family	NA
UHGV-0160375_5	Structural annotation	PF05339, MF_00535, NF002773, COG3655	NA	NA
UHGV-0160375_7	KOfam	K09452	ARX; homeobox protein aristaless-related	NA
UHGV-0160375_7	PHROG	phrog_7964	NA	unknown function
UHGV-0160375_7	UniRef90	UniRef90_A0A285PUH1	Trimeric LpxA-like	NA
UHGV-0160375_7	eggNOG-mapper	665950.HMPREF1025_02555	Catalyzes the N-acylation of UDP-3-O-acylglucosamine using 3-hydroxyacyl-ACP as the acyl donor. Is involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell	NA
UHGV-0160375_7	Pfam	PF18836	YdcK Beta solenoid repeat	B_solenoid_ydck
UHGV-0160375_7	Pfam	PF04519	Polymer-forming cytoskeletal	Bactofilin
UHGV-0160375_7	COG	COG1044	UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase	NA
UHGV-0160375_7	Structural annotation	MF_00523, NF040481, COG1043	NA	NA
UHGV-0160375_8	AcrCatalog	cluster_17974	NA	NA
UHGV-0160375_9	UniRef90	UniRef90_A0A395X9S5	Toxin HipA	NA
UHGV-0160375_9	eggNOG-mapper	478749.BRYFOR_05417	NA	NA
UHGV-0160375_11	Structural annotation	PF10922, TIGR03741	NA	NA
UHGV-0160375_13	PHROG	phrog_253	Mu Gam-like end protection	DNA, RNA and nucleotide metabolism
UHGV-0160375_13	UniRef90	UniRef90_UPI001C3A3B51	Siphovirus Gp157 family protein	NA
UHGV-0160375_13	eggNOG-mapper	411470.RUMGNA_02192	Siphovirus Gp157	NA
UHGV-0160375_13	Pfam	PF05565	Siphovirus Gp157	Sipho_Gp157
UHGV-0160375_13	Structural annotation	PF05565	NA	NA
UHGV-0160375_14	PHROG	phrog_7838	exonuclease	DNA, RNA and nucleotide metabolism
UHGV-0160375_14	UniRef90	UniRef90_A0A8D9UGW3	DNA repair protein RAD52-like protein	NA
UHGV-0160375_14	eggNOG-mapper	742767.HMPREF9456_02052	NA	NA
UHGV-0160375_14	Structural annotation	PF04098, TIGR00607, COG5055	NA	NA
UHGV-0160375_15	PHROG	phrog_72	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
UHGV-0160375_15	eggNOG-mapper	411490.ANACAC_00804	NA	NA
UHGV-0160375_15	Structural annotation	PF05772, NF007281	NA	NA
UHGV-0160375_16	UniRef90	UniRef90_UPI00164A90AD	HNH endonuclease	NA
UHGV-0160375_16	eggNOG-mapper	1235800.C819_02254	HNH nucleases	NA
UHGV-0160375_17	PHROG	phrog_244	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0160375_17	eggNOG-mapper	33035.JPJF01000122_gene2460	NA	NA
UHGV-0160375_17	Structural annotation	PF01870, MF_01490, NF040854, COG1591	NA	NA
UHGV-0160375_18	PHROG	phrog_10469	DnaD-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0160375_18	UniRef90	UniRef90_A0A174WT25	Replication initiator A domain-containing protein	NA
UHGV-0160375_18	eggNOG-mapper	97138.C820_00775	DnaD domain protein	NA
UHGV-0160375_18	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0160375_18	Structural annotation	PF10771, MF_01177, TIGR01714, COG0640	NA	NA
UHGV-0160375_19	KOfam	K02315	dnaC; DNA replication protein DnaC	NA
UHGV-0160375_19	PHROG	phrog_50	DnaC-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0160375_19	UniRef90	UniRef90_UPI001D06D025	ATP-binding protein	NA
UHGV-0160375_19	eggNOG-mapper	397291.C804_01604	Bacterial dnaA protein	NA
UHGV-0160375_19	Pfam	PF01695	IstB-like ATP binding protein	IstB_IS21
UHGV-0160375_19	COG	COG1484	DNA replication protein DnaC	NA
UHGV-0160375_19	Structural annotation	PF01695, MF_00377, NF005992, COG1484	NA	NA
UHGV-0160375_20	eggNOG-mapper	596152.DesU5LDRAFT_1910	NA	NA
UHGV-0160375_20	Structural annotation	PF03787, TIGR02581, COG1604	NA	NA
UHGV-0160375_21	UniRef90	UniRef90_A0A412ELN5	LexA_DNA_bind domain-containing protein	NA
UHGV-0160375_21	eggNOG-mapper	1235799.C818_03301	LexA DNA binding domain	NA
UHGV-0160375_21	Pfam	PF01726	LexA DNA binding domain	LexA_DNA_bind
UHGV-0160375_21	COG	COG1974	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	NA
UHGV-0160375_21	Structural annotation	PF01726, COG0640	NA	NA
UHGV-0160375_24	KOfam	K00558	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	NA
UHGV-0160375_24	PHROG	phrog_116	DNA methyltransferase	other
UHGV-0160375_24	UniRef90	UniRef90_A0A3E5ENN5	DNA (cytosine-5-)-methyltransferase	NA
UHGV-0160375_24	eggNOG-mapper	1499683.CCFF01000017_gene2594	PFAM C-5 cytosine-specific DNA methylase	NA
UHGV-0160375_24	PADLOC	MTase_II_00058	Type II methyltransferase	RM
UHGV-0160375_24	Pfam	PF00145	C-5 cytosine-specific DNA methylase	DNA_methylase
UHGV-0160375_24	NCBIFam	TIGR00675.1	DNA (cytosine-5-)-methyltransferase	NA
UHGV-0160375_24	COG	COG0270	DNA-cytosine methylase	NA
UHGV-0160375_24	Structural annotation	PF00145, MF_00786, TIGR00675, COG0270	NA	NA
UHGV-0160375_26	Structural annotation	NF041070	NA	NA
UHGV-0160375_27	KOfam	K19779	ralR; endodeoxyribonuclease RalR [EC:3.1.-.-]	NA
UHGV-0160375_27	PHROG	phrog_599	Lar-like restriction alleviation protein	moron, auxiliary metabolic gene and host takeover
UHGV-0160375_27	UniRef90	UniRef90_A0A8J6MB86	Lar family restriction alleviation protein	NA
UHGV-0160375_27	eggNOG-mapper	220341.16503116	Toxic component of a type I toxin-antitoxin (TA) system. Upon overexpression inhibits growth and reduces colony-forming units in both the presence and absence of the Rac prophage, cells become filamentous. Has deoxyribonuclease activity (probably endonucleolytic), does not digest RNA. Its toxic effects are neutralized by sRNA antitoxin RalA, which is encoded in trans on the opposite DNA strand. Has RAL-like activity	NA
UHGV-0160375_27	Pfam	PF14354	Restriction alleviation protein Lar	Lar_restr_allev
UHGV-0160375_27	NCBIFam	TIGR03655.1	Lar family restriction alleviation protein	NA
UHGV-0160375_27	dbAPIS	APIS033	Lar is functionally similar to RaI, is able to alleviate restriction and enhance modification by EcoKI. And the nucleotide sequences of their genes share 47% identity, indicating a common origin.	NA
UHGV-0160375_29	PHROG	phrog_419	NA	unknown function
UHGV-0160375_29	UniRef90	UniRef90_A0A060QMU0	NA	NA
UHGV-0160375_29	eggNOG-mapper	1123312.KB904569_gene346	NA	NA
UHGV-0160375_31	eggNOG-mapper	476272.RUMHYD_01751	NA	NA
UHGV-0160375_31	AcrCatalog	cluster_11670	NA	NA
UHGV-0160375_32	PHROG	phrog_20593	NA	unknown function
UHGV-0160375_32	Structural annotation	PF07870, TIGR02501	NA	NA
UHGV-0160375_33	PHROG	phrog_8684	NA	unknown function
UHGV-0160375_33	UniRef90	UniRef90_A0A2V2D5P6	YopX domain-containing protein	NA
UHGV-0160375_33	eggNOG-mapper	457412.RSAG_01162	YopX protein	NA
UHGV-0160375_33	Pfam	PF09643	YopX protein	YopX
UHGV-0160375_33	NCBIFam	TIGR01671.1	phage conserved hypothetical protein TIGR01671	NA
UHGV-0160375_33	Structural annotation	PF09643, TIGR01671	NA	NA
UHGV-0160375_36	UniRef90	UniRef90_A0A415TX35	BAH domain-containing protein	NA
UHGV-0160375_36	eggNOG-mapper	397290.C810_01492	NA	NA
UHGV-0160375_37	Structural annotation	PF17630	NA	NA
UHGV-0160375_38	PHROG	phrog_10714	NA	unknown function
UHGV-0160375_38	eggNOG-mapper	537007.BLAHAN_05460	NA	NA
UHGV-0160375_42	PHROG	phrog_33130	NA	unknown function
UHGV-0160375_42	Structural annotation	PF10922, MF_00839	NA	NA
UHGV-0160375_43	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0160375_43	PHROG	phrog_3717	terminase large subunit	head and packaging
UHGV-0160375_43	UniRef90	UniRef90_A0A1C6CDG5	Phage terminase, large subunit, PBSX family	NA
UHGV-0160375_43	eggNOG-mapper	33035.JPJF01000106_gene3136	Terminase small subunit	NA
UHGV-0160375_43	Pfam	PF03592	Terminase small subunit	Terminase_2
UHGV-0160375_43	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-0160375_43	Pfam	PF17288	Terminase RNAseH like domain	Terminase_3C
UHGV-0160375_43	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0160375_43	COG	COG1783	Phage terminase large subunit	NA
UHGV-0160375_43	Structural annotation	PF04466, PF17288, PF03592, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0160375_45	PHROG	phrog_533	portal protein	head and packaging
UHGV-0160375_45	UniRef90	UniRef90_A0A1C6CDM8	Phage portal protein, putative, A118 family	NA
UHGV-0160375_45	eggNOG-mapper	33035.JPJF01000106_gene3135	phage minor capsid protein	NA
UHGV-0160375_45	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-0160375_46	Structural annotation	PF13229, PF21644, TIGR04247	NA	NA
UHGV-0160375_47	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0160375_47	UniRef90	UniRef90_A0A395X791	Phage capsid protein	NA
UHGV-0160375_47	eggNOG-mapper	33035.JPJF01000106_gene3134	Phage minor capsid protein 2	NA
UHGV-0160375_47	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0160375_47	COG	COG2369	NA	NA
UHGV-0160375_47	Structural annotation	PF06152	NA	NA
UHGV-0160375_48	PHROG	phrog_3754	NA	unknown function
UHGV-0160375_48	eggNOG-mapper	476272.RUMHYD_01764	NA	NA
UHGV-0160375_49	UniRef90	UniRef90_A0A395X7A4	CTP synthase	NA
UHGV-0160375_49	eggNOG-mapper	476272.RUMHYD_01766	NA	NA
UHGV-0160375_50	PHROG	phrog_21718	NA	unknown function
UHGV-0160375_50	eggNOG-mapper	476272.RUMHYD_01768	NA	NA
UHGV-0160375_51	PHROG	phrog_22984	NA	unknown function
UHGV-0160375_52	PHROG	phrog_16490	NA	unknown function
UHGV-0160375_52	eggNOG-mapper	397290.C810_01328	NA	NA
UHGV-0160375_53	PHROG	phrog_20016	NA	unknown function
UHGV-0160375_53	UniRef90	UniRef90_A0A285PT46	Tumour necrosis factor-like domain	NA
UHGV-0160375_53	eggNOG-mapper	397290.C810_05214	NA	NA
UHGV-0160375_53	Structural annotation	PF18573, NF033147	NA	NA
UHGV-0160375_54	PHROG	phrog_28802	NA	unknown function
UHGV-0160375_54	eggNOG-mapper	476272.RUMHYD_01772	NA	NA
UHGV-0160375_55	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-0160375_55	UniRef90	UniRef90_UPI001D14C9C8	phage scaffolding protein	NA
UHGV-0160375_55	eggNOG-mapper	476272.RUMHYD_01775	COG NOG36366 non supervised orthologous group	NA
UHGV-0160375_55	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-0160375_56	PHROG	phrog_544	major head protein	head and packaging
UHGV-0160375_56	UniRef90	UniRef90_A0A395X7A1	S-l_SbsC_C domain-containing protein	NA
UHGV-0160375_56	eggNOG-mapper	476272.RUMHYD_01776	NA	NA