UHGV-0160421

Genome information

vOTU vOTU-019589

Genome length 33,739 bps

CDS count 44

Completeness 81.43% (medium-quality)

geNomad score 0.9784

Prediction confidence Confident

Genome information
Genome ID	UHGV-0160421
vOTU ID	vOTU-019589
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_460848
BioSample	SAMN05971411
Country	United States
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	81.43% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	Yes
CheckV viral markers	17
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9784
Virus hallmark genes (geNomad)	9
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	29.91
Jumbo phage	No

Genome content
Genome length	33,739 bps
GC content	42.00%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	44
CDS density	91.14%
Average CDS length	700.91 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0160421_1	KOfam	K08131	COL9A; collagen type IX alpha	NA
UHGV-0160421_1	PHROG	phrog_6616	tail protein	tail
UHGV-0160421_1	UniRef90	UniRef90_A0A1C5RGI0	Peptidase S74 domain-containing protein	NA
UHGV-0160421_1	eggNOG-mapper	476272.RUMHYD_01992	NA	NA
UHGV-0160421_1	Pfam	PF01391	Collagen triple helix repeat (20 copies)	Collagen
UHGV-0160421_1	Pfam	PF21470	Minor structural protein 5-like, C-terminal domain	BppU-like_C
UHGV-0160421_1	Structural annotation	PF05113, PF18432, NF033848, NF011735, COG4379	NA	NA
UHGV-0160421_2	PHROG	phrog_1194	NA	unknown function
UHGV-0160421_2	eggNOG-mapper	33035.JPJF01000093_gene2242	NA	NA
UHGV-0160421_2	Structural annotation	PF20458, TIGR02126, COG3499	NA	NA
UHGV-0160421_3	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-0160421_3	UniRef90	UniRef90_A0A1C5RGR7	Phage-related protein	NA
UHGV-0160421_3	eggNOG-mapper	33035.JPJF01000093_gene2243	phage tail tape measure protein	NA
UHGV-0160421_3	COG	COG3941	Phage tail tape-measure protein, controls tail length	NA
UHGV-0160421_3	Structural annotation	PF20155, TIGR01760, COG3941	NA	NA
UHGV-0160421_4	PHROG	phrog_8355	NA	unknown function
UHGV-0160421_4	UniRef90	UniRef90_UPI001F2CFAB2	bacteriophage Gp15 family protein	NA
UHGV-0160421_4	eggNOG-mapper	33035.JPJF01000093_gene2244	NA	NA
UHGV-0160421_4	Structural annotation	PF06854	NA	NA
UHGV-0160421_5	PHROG	phrog_8300	NA	unknown function
UHGV-0160421_5	eggNOG-mapper	742740.HMPREF9474_03512	NA	NA
UHGV-0160421_5	Structural annotation	PF06854	NA	NA
UHGV-0160421_6	PHROG	phrog_820	major tail protein	tail
UHGV-0160421_6	eggNOG-mapper	33035.JPJF01000093_gene2246	NA	NA
UHGV-0160421_6	Pfam	PF06199	Phage tail tube protein	Phage_tail_2
UHGV-0160421_6	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-0160421_7	PHROG	phrog_2595	head-tail connector protein	connector
UHGV-0160421_7	UniRef90	UniRef90_UPI001C0EB705	minor capsid protein	NA
UHGV-0160421_7	eggNOG-mapper	483218.BACPEC_01150	NA	NA
UHGV-0160421_7	Pfam	PF12691	Bacteriophage minor capsid protein	Minor_capsid_3
UHGV-0160421_7	Structural annotation	PF12691, COG5003	NA	NA
UHGV-0160421_8	PHROG	phrog_556	minor head protein	head and packaging
UHGV-0160421_8	eggNOG-mapper	742740.HMPREF9474_03509	NA	NA
UHGV-0160421_9	PHROG	phrog_8710	NA	unknown function
UHGV-0160421_9	eggNOG-mapper	742740.HMPREF9474_03508	NA	NA
UHGV-0160421_9	Structural annotation	PF10665, TIGR01563, COG5614	NA	NA
UHGV-0160421_10	PHROG	phrog_541	head-tail adaptor	connector
UHGV-0160421_10	eggNOG-mapper	1298920.KI911353_gene4848	NA	NA
UHGV-0160421_11	PHROG	phrog_422	major head protein	head and packaging
UHGV-0160421_11	UniRef90	UniRef90_A0A414W378	Phage capsid protein	NA
UHGV-0160421_11	eggNOG-mapper	663278.Ethha_1589	NA	NA
UHGV-0160421_11	Structural annotation	PF19821, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-0160421_12	PHROG	phrog_2303	head scaffolding protein	head and packaging
UHGV-0160421_12	eggNOG-mapper	1304866.K413DRAFT_0806	NA	NA
UHGV-0160421_14	PHROG	phrog_478	site-specific recombination directionality factor RDF	integration and excision
UHGV-0160421_14	UniRef90	UniRef90_R6R5K5	Protein 64 protein	NA
UHGV-0160421_14	eggNOG-mapper	1111121.HMPREF1247_0834	NA	NA
UHGV-0160421_15	PHROG	phrog_1048	NA	unknown function
UHGV-0160421_15	UniRef90	UniRef90_A0A373P4J3	NA	NA
UHGV-0160421_15	eggNOG-mapper	457412.RSAG_01107	NA	NA
UHGV-0160421_15	Pfam	PF11195	NA	DUF2829
UHGV-0160421_15	dbAPIS	APIS029	Tad2 is a "sponge" that sequesters the immune signaling molecules produced by Thoeris TIR-domain proteins in response to phage.	NA
UHGV-0160421_15	Structural annotation	PF11195	NA	NA
UHGV-0160421_16	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0160421_16	UniRef90	UniRef90_A0A414W2X3	Minor capsid protein	NA
UHGV-0160421_16	eggNOG-mapper	33035.JPJF01000093_gene2255	NA	NA
UHGV-0160421_16	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0160421_16	Pfam	PF18451	Contact-dependent growth inhibition CdiA C-terminal domain	CdiA_C
UHGV-0160421_16	COG	COG5585	Putative phage head morphogenesis protein, F of phage Mu or gp7 of SPP1	NA
UHGV-0160421_16	Structural annotation	PF06152	NA	NA
UHGV-0160421_17	PHROG	phrog_25639	NA	unknown function
UHGV-0160421_17	eggNOG-mapper	742740.HMPREF9474_03502	NA	NA
UHGV-0160421_18	PHROG	phrog_533	portal protein	head and packaging
UHGV-0160421_18	UniRef90	UniRef90_A0A1C5YZW6	Phage portal protein, putative, A118 family	NA
UHGV-0160421_18	eggNOG-mapper	742740.HMPREF9474_03501	NA	NA
UHGV-0160421_18	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-0160421_19	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0160421_19	PHROG	phrog_2	terminase large subunit	head and packaging
UHGV-0160421_19	UniRef90	UniRef90_A0A414SEW8	Terminase	NA
UHGV-0160421_19	eggNOG-mapper	742740.HMPREF9474_03500	Phage terminase, large subunit, PBSX family	NA
UHGV-0160421_19	COG	COG1783	Phage terminase large subunit	NA
UHGV-0160421_19	Structural annotation	PF03237, PF17289, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-0160421_20	KOfam	K07474	xtmA; phage terminase small subunit	NA
UHGV-0160421_20	PHROG	phrog_51	terminase small subunit	head and packaging
UHGV-0160421_20	UniRef90	UniRef90_A0A415L5B5	Terminase small subunit	NA
UHGV-0160421_20	eggNOG-mapper	1298920.KI911353_gene4857	Terminase small subunit	NA
UHGV-0160421_20	Pfam	PF03592	Terminase small subunit	Terminase_2
UHGV-0160421_20	COG	COG3728	Phage terminase, small subunit	NA
UHGV-0160421_20	Structural annotation	PF03592, COG3728	NA	NA
UHGV-0160421_21	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0160421_21	UniRef90	UniRef90_UPI000931D7F9	RNA polymerase subunit sigma-70	NA
UHGV-0160421_21	eggNOG-mapper	411459.RUMOBE_00943	NA	NA
UHGV-0160421_21	Structural annotation	PF02996	NA	NA
UHGV-0160421_22	PHROG	phrog_6568	NA	unknown function
UHGV-0160421_26	PHROG	phrog_8684	NA	unknown function
UHGV-0160421_26	UniRef90	UniRef90_A0A395X9H4	YopX domain-containing protein	NA
UHGV-0160421_26	eggNOG-mapper	457412.RSAG_01162	YopX protein	NA
UHGV-0160421_26	Pfam	PF09643	YopX protein	YopX
UHGV-0160421_26	NCBIFam	TIGR01671.1	phage conserved hypothetical protein TIGR01671	NA
UHGV-0160421_26	Structural annotation	PF09643, TIGR01671	NA	NA
UHGV-0160421_27	UniRef90	UniRef90_A0A173WN74	Sigma-70, region 4	NA
UHGV-0160421_27	Pfam	PF18024	Helix-turn-helix domain	HTH_50
UHGV-0160421_27	Pfam	PF13384	Homeodomain-like domain	HTH_23
UHGV-0160421_27	Structural annotation	PF01710, NF040595	NA	NA
UHGV-0160421_29	PHROG	phrog_23707	NA	unknown function
UHGV-0160421_29	UniRef90	UniRef90_UPI00156E1A02	alanine racemase	NA
UHGV-0160421_29	eggNOG-mapper	411483.FAEPRAA2165_01889	NA	NA
UHGV-0160421_30	PHROG	phrog_15982	NA	unknown function
UHGV-0160421_30	UniRef90	UniRef90_A5ZPN2	NA	NA
UHGV-0160421_30	eggNOG-mapper	411459.RUMOBE_00949	NA	NA
UHGV-0160421_30	Pfam	PF12961	NA	DUF3850
UHGV-0160421_30	COG	COG1475	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	NA
UHGV-0160421_30	Structural annotation	PF12961, PF11300, MF_00771, NF002615, COG2411	NA	NA
UHGV-0160421_31	PHROG	phrog_8470	NA	unknown function
UHGV-0160421_31	UniRef90	UniRef90_UPI001D086F83	PcfJ domain-containing protein	NA
UHGV-0160421_31	eggNOG-mapper	411459.RUMOBE_00950	PcfJ-like protein	NA
UHGV-0160421_31	Pfam	PF14284	PcfJ-like protein	PcfJ
UHGV-0160421_31	Structural annotation	PF14284	NA	NA
UHGV-0160421_32	eggNOG-mapper	411459.RUMOBE_00951	NA	NA
UHGV-0160421_33	KOfam	K03469	rnhA, RNASEH1; ribonuclease HI [EC:3.1.26.4]	NA
UHGV-0160421_33	PHROG	phrog_531	Rnase H	DNA, RNA and nucleotide metabolism
UHGV-0160421_33	UniRef90	UniRef90_A0A173WRS0	Ribonuclease H	NA
UHGV-0160421_33	eggNOG-mapper	411459.RUMOBE_00952	RNase H	NA
UHGV-0160421_33	Pfam	PF00075	RNase H	RNase_H
UHGV-0160421_33	COG	COG0328	Ribonuclease HI	NA
UHGV-0160421_33	Structural annotation	PF00075, MF_00042, NF001236, COG0328	NA	NA
UHGV-0160421_34	PHROG	phrog_3584	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0160421_34	eggNOG-mapper	411459.RUMOBE_00953	NA	NA
UHGV-0160421_34	Structural annotation	PF01446	NA	NA
UHGV-0160421_39	UniRef90	UniRef90_UPI001D0976C2	actin family protein	NA
UHGV-0160421_40	UniRef90	UniRef90_UPI00189D0969	NA	NA
UHGV-0160421_40	eggNOG-mapper	742723.HMPREF9477_00936	Helix-turn-helix	NA
UHGV-0160421_40	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0160421_40	Structural annotation	PF05339, NF041951, COG1476	NA	NA
UHGV-0160421_41	KOfam	K22299	rghR; HTH-type transcriptional regulator, competence development regulator	NA
UHGV-0160421_41	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0160421_41	UniRef90	UniRef90_UPI001D02CC6F	helix-turn-helix domain-containing protein	NA
UHGV-0160421_41	eggNOG-mapper	742723.HMPREF9477_00937	Helix-turn-helix XRE-family like proteins	NA
UHGV-0160421_41	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0160421_41	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0160421_41	Structural annotation	PF12844, MF_00535, NF041951, COG1476	NA	NA
UHGV-0160421_42	PHROG	phrog_87	metallo-protease	other
UHGV-0160421_42	UniRef90	UniRef90_A0A414EG59	ImmA/IrrE family metallo-endopeptidase	NA
UHGV-0160421_42	eggNOG-mapper	457412.RSAG_00798	Zn peptidase	NA
UHGV-0160421_42	Pfam	PF06114	IrrE N-terminal-like domain	Peptidase_M78
UHGV-0160421_42	COG	COG2856	Zn-dependent peptidase ImmA, M78 family	NA
UHGV-0160421_42	Structural annotation	PF06114, COG2856	NA	NA
UHGV-0160421_43	PHROG	phrog_1847	NA	unknown function
UHGV-0160421_43	UniRef90	UniRef90_A0A173ZYI4	T5orf172 domain	NA
UHGV-0160421_43	eggNOG-mapper	1256908.HMPREF0373_00641	T5orf172	NA
UHGV-0160421_43	Pfam	PF13455	Meiotically up-regulated gene 113	MUG113
UHGV-0160421_43	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-0160421_43	Structural annotation	PF13250, NF041454	NA	NA
UHGV-0160421_44	KOfam	K06400	spoIVCA; site-specific DNA recombinase	NA
UHGV-0160421_44	PHROG	phrog_95	integrase	integration and excision
UHGV-0160421_44	UniRef90	UniRef90_A5ZPQ0	Resolvase, N-terminal domain protein	NA
UHGV-0160421_44	eggNOG-mapper	411459.RUMOBE_00967	COG COG1961 Site-specific recombinases, DNA invertase Pin homologs	NA
UHGV-0160421_44	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-0160421_44	Pfam	PF07508	Recombinase	Recombinase
UHGV-0160421_44	Pfam	PF13408	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
UHGV-0160421_44	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-0160421_44	Structural annotation	PF07508, PF00239, NF041201, COG1961	NA	NA