UHGV-0160446

Genome information

Genome length 28,736 bps

CDS count 46

Completeness 50.38% (medium-quality)

geNomad score 0.9706

Prediction confidence Confident

Genome information
Genome ID	UHGV-0160446
vOTU ID	vOTU-015550
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_471589
BioSample	SAMN06111938
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	50.38% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	14
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9706
Virus hallmark genes (geNomad)	9
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	23.03
Jumbo phage	No

Genome content
Genome length	28,736 bps
GC content	53.65%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	46
CDS density	93.55%
Average CDS length	586.24 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0160446_1	eggNOG-mapper	411471.SUBVAR_07003	NA	NA
UHGV-0160446_2	PHROG	phrog_25462	NA	unknown function
UHGV-0160446_2	UniRef90	UniRef90_A0A6N8H1D3	Type VI secretion protein	NA
UHGV-0160446_2	eggNOG-mapper	742733.HMPREF9469_02885	NA	NA
UHGV-0160446_2	Structural annotation	PF01638, MF_01819, NF002926, COG1733	NA	NA
UHGV-0160446_3	PHROG	phrog_426	terminase small subunit	head and packaging
UHGV-0160446_3	UniRef90	UniRef90_A0A6N8H2N8	NA	NA
UHGV-0160446_3	eggNOG-mapper	411471.SUBVAR_07001	NA	NA
UHGV-0160446_3	Pfam	PF11985	Bacteriophage Mu, Gp27	Phage_Mu_Gp27
UHGV-0160446_3	Structural annotation	PF11985	NA	NA
UHGV-0160446_4	KOfam	K02601	nusG; transcription termination/antitermination protein NusG	NA
UHGV-0160446_4	PHROG	phrog_6386	transcription antiterminator	transcription regulation
UHGV-0160446_4	UniRef90	UniRef90_A0A6N8H0F4	NGN domain-containing protein	NA
UHGV-0160446_4	eggNOG-mapper	411471.SUBVAR_07000	Transcription termination factor nusG	NA
UHGV-0160446_4	Pfam	PF02357	Transcription termination factor nusG	NusG
UHGV-0160446_4	COG	COG0250	Transcription termination/antitermination protein NusG	NA
UHGV-0160446_4	Structural annotation	PF02357, MF_00951, NF033641, COG0250	NA	NA
UHGV-0160446_6	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0160446_6	PHROG	phrog_3717	terminase large subunit	head and packaging
UHGV-0160446_6	UniRef90	UniRef90_A0A6N8H4Y1	PBSX family phage terminase large subunit	NA
UHGV-0160446_6	eggNOG-mapper	411471.SUBVAR_06998	Phage terminase, large subunit, PBSX family	NA
UHGV-0160446_6	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-0160446_6	Pfam	PF17288	Terminase RNAseH like domain	Terminase_3C
UHGV-0160446_6	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0160446_6	COG	COG1783	Phage terminase large subunit	NA
UHGV-0160446_6	Structural annotation	PF04466, PF17288, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0160446_8	PHROG	phrog_533	portal protein	head and packaging
UHGV-0160446_8	UniRef90	UniRef90_D1PRG7	Putative phage minor capsid protein	NA
UHGV-0160446_8	eggNOG-mapper	411471.SUBVAR_06996	NA	NA
UHGV-0160446_8	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-0160446_9	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0160446_9	UniRef90	UniRef90_UPI00196795ED	phage minor capsid protein	NA
UHGV-0160446_9	eggNOG-mapper	411471.SUBVAR_06995	NA	NA
UHGV-0160446_9	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0160446_9	COG	COG2369	NA	NA
UHGV-0160446_9	Structural annotation	PF06152, PF14220	NA	NA
UHGV-0160446_12	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-0160446_12	UniRef90	UniRef90_A0A4R1QTK7	Minor structural protein GP20	NA
UHGV-0160446_12	eggNOG-mapper	411471.SUBVAR_06994	Phage minor structural protein GP20	NA
UHGV-0160446_12	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-0160446_12	Structural annotation	PF06810	NA	NA
UHGV-0160446_13	PHROG	phrog_422	major head protein	head and packaging
UHGV-0160446_13	eggNOG-mapper	665956.HMPREF1032_02951	NA	NA
UHGV-0160446_13	Structural annotation	PF21703, MF_04119, TIGR04387, COG4834	NA	NA
UHGV-0160446_15	PHROG	phrog_541	head-tail adaptor	connector
UHGV-0160446_15	eggNOG-mapper	411471.SUBVAR_06939	NA	NA
UHGV-0160446_16	eggNOG-mapper	642492.Clole_0823	NA	NA
UHGV-0160446_16	Structural annotation	PF20536, MF_01370, TIGR02126	NA	NA
UHGV-0160446_17	PHROG	phrog_556	minor head protein	head and packaging
UHGV-0160446_17	UniRef90	UniRef90_UPI001967B4B3	minor capsid protein	NA
UHGV-0160446_17	eggNOG-mapper	999411.HMPREF1092_03318	Minor capsid protein	NA
UHGV-0160446_17	Pfam	PF11114	Minor capsid protein	Minor_capsid_2
UHGV-0160446_17	Structural annotation	PF11114	NA	NA
UHGV-0160446_18	eggNOG-mapper	693746.OBV_18140	NA	NA
UHGV-0160446_18	Structural annotation	PF20765	NA	NA
UHGV-0160446_19	PHROG	phrog_3099	NA	unknown function
UHGV-0160446_19	eggNOG-mapper	411471.SUBVAR_06936	NA	NA
UHGV-0160446_19	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-0160446_20	PHROG	phrog_11299	NA	unknown function
UHGV-0160446_20	eggNOG-mapper	665956.HMPREF1032_03059	NA	NA
UHGV-0160446_20	Structural annotation	PF10666	NA	NA
UHGV-0160446_21	PHROG	phrog_706	NA	unknown function
UHGV-0160446_21	UniRef90	UniRef90_UPI0013141117	Gp15 family bacteriophage protein	NA
UHGV-0160446_21	eggNOG-mapper	665956.HMPREF1032_03058	Bacteriophage Gp15 protein	NA
UHGV-0160446_21	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-0160446_21	Structural annotation	PF06854	NA	NA
UHGV-0160446_22	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-0160446_22	eggNOG-mapper	411471.SUBVAR_06934	tape measure	NA
UHGV-0160446_22	COG	COG5412	Phage-related protein	NA
UHGV-0160446_23	PHROG	phrog_1194	NA	unknown function
UHGV-0160446_23	eggNOG-mapper	1120746.CCNL01000014_gene2106	NA	NA
UHGV-0160446_23	Structural annotation	PF20458, TIGR01633, COG3499	NA	NA
UHGV-0160446_24	PHROG	phrog_13879	NA	unknown function
UHGV-0160446_24	eggNOG-mapper	1120746.CCNL01000014_gene2107	NA	NA
UHGV-0160446_24	Structural annotation	PF14594, PF03256, NF033848, COG4379, COG5156	NA	NA
UHGV-0160446_25	PHROG	phrog_18725	NA	unknown function
UHGV-0160446_25	eggNOG-mapper	1120746.CCNL01000014_gene2212	NA	NA
UHGV-0160446_30	NCBIFam	NF040910.1	CD1375 family protein	NA
UHGV-0160446_30	Structural annotation	NF040910	NA	NA
UHGV-0160446_31	eggNOG-mapper	658655.HMPREF0988_00919	NA	NA
UHGV-0160446_32	Structural annotation	PF20622, COG5456	NA	NA
UHGV-0160446_33	PHROG	phrog_13589	NA	unknown function
UHGV-0160446_33	eggNOG-mapper	411471.SUBVAR_06929	ATPase involved in DNA repair	NA
UHGV-0160446_33	COG	COG0419	DNA repair exonuclease SbcCD ATPase subunit	NA
UHGV-0160446_34	COG	COG5301	Phage-related tail fiber protein	NA
UHGV-0160446_35	PHROG	phrog_19111	NA	unknown function
UHGV-0160446_35	eggNOG-mapper	1235793.C809_02474	nuclear chromosome segregation	NA
UHGV-0160446_35	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-0160446_37	PHROG	phrog_38190	NA	unknown function
UHGV-0160446_37	eggNOG-mapper	665956.HMPREF1032_02936	NA	NA
UHGV-0160446_39	PHROG	phrog_16490	NA	unknown function
UHGV-0160446_39	eggNOG-mapper	397290.C810_01328	NA	NA
UHGV-0160446_40	PHROG	phrog_20016	NA	unknown function
UHGV-0160446_40	Structural annotation	PF00386, NF033147	NA	NA
UHGV-0160446_42	eggNOG-mapper	397290.C810_01336	NA	NA
UHGV-0160446_43	PHROG	phrog_4105	NA	unknown function
UHGV-0160446_43	UniRef90	UniRef90_A0A7M4BNX2	Phage holin	NA
UHGV-0160446_43	eggNOG-mapper	742733.HMPREF9469_05011	NA	NA
UHGV-0160446_44	PHROG	phrog_881	holin	lysis
UHGV-0160446_44	UniRef90	UniRef90_A0A4Q7P349	Dp-1 family holin	NA
UHGV-0160446_44	eggNOG-mapper	742740.HMPREF9474_02251	Putative phage holin Dp-1	NA
UHGV-0160446_44	Pfam	PF16938	Putative phage holin Dp-1	Phage_holin_Dp1
UHGV-0160446_44	Structural annotation	PF16938	NA	NA
UHGV-0160446_46	KOfam	K00059	fabG, OAR1; 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]	NA
UHGV-0160446_46	PHROG	phrog_3142	FabG-like 3-oxoacyl-(acyl-carrier-protein) reductase	moron, auxiliary metabolic gene and host takeover
UHGV-0160446_46	UniRef90	UniRef90_A0A6N8H0Z3	SDR family oxidoreductase	NA
UHGV-0160446_46	eggNOG-mapper	411471.SUBVAR_05157	Oxidoreductase, short chain dehydrogenase reductase family protein	NA
UHGV-0160446_46	Pfam	PF13561	Enoyl-(Acyl carrier protein) reductase	adh_short_C2
UHGV-0160446_46	NCBIFam	NF009466.0	3-oxoacyl-ACP reductase FabG	NA
UHGV-0160446_46	COG	COG1028	NAD(P)-dependent dehydrogenase, short-chain alcohol dehydrogenase family	NA
UHGV-0160446_46	Structural annotation	PF13561, MF_01647, NF004198, COG1028	NA	NA