UHGV-0160471

Genome information

Genome length 36,980 bps

CDS count 70

Completeness 64.07% (medium-quality)

geNomad score 0.9817

Prediction confidence Confident

Genome information
Genome ID	UHGV-0160471
vOTU ID	vOTU-022213
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_476027
BioSample	SAMN06115463
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	64.07% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	14
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9817
Virus hallmark genes (geNomad)	8
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	21.01
Jumbo phage	No

Genome content
Genome length	36,980 bps
GC content	39.95%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	70
CDS density	85.60%
Average CDS length	455.74 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0160471_1	PHROG	phrog_215	structural protein with Ig domain	head and packaging
UHGV-0160471_1	UniRef90	UniRef90_A0A1G5IID5	Ig-like domain (Group 2) (Fragment)	NA
UHGV-0160471_1	eggNOG-mapper	445973.CLOBAR_00420	Bacterial Ig-like domain (group 2)	NA
UHGV-0160471_1	Pfam	PF02368	Bacterial Ig-like domain (group 2)	Big_2
UHGV-0160471_1	COG	COG5492	NA	NA
UHGV-0160471_2	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-0160471_2	eggNOG-mapper	1298920.KI911353_gene2649	tape measure	NA
UHGV-0160471_2	COG	COG3941	Phage tail tape-measure protein, controls tail length	NA
UHGV-0160471_3	PHROG	phrog_7168	homing endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0160471_3	UniRef90	UniRef90_A0A173UI60	Group I intron endonuclease	NA
UHGV-0160471_3	eggNOG-mapper	745718.JADT01000019_gene1515	Intron encoded nuclease repeat motif	NA
UHGV-0160471_3	Pfam	PF01541	GIY-YIG catalytic domain	GIY-YIG
UHGV-0160471_3	Pfam	PF07453	NUMOD1 domain	NUMOD1
UHGV-0160471_3	NCBIFam	TIGR01453.1	group I intron endonuclease	NA
UHGV-0160471_3	Structural annotation	PF07453, PF19835, PF04936, TIGR01453	NA	NA
UHGV-0160471_4	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-0160471_4	UniRef90	UniRef90_A0A173UI54	Phage-related protein	NA
UHGV-0160471_4	eggNOG-mapper	1408437.JNJN01000010_gene1238	domain protein	NA
UHGV-0160471_4	COG	COG1511	NA	NA
UHGV-0160471_5	PHROG	phrog_14030	NA	unknown function
UHGV-0160471_5	UniRef90	UniRef90_A0A3R6ARM6	Peptidoglycan-binding protein	NA
UHGV-0160471_5	eggNOG-mapper	1235793.C809_02691	N-Acetylmuramoyl-L-alanine amidase	NA
UHGV-0160471_5	COG	COG3023	N-acetyl-anhydromuramyl-L-alanine amidase AmpD	NA
UHGV-0160471_8	UniRef90	UniRef90_A0A8D9PGN2	Major tail protein	NA
UHGV-0160471_8	Structural annotation	PF16463, TIGR02126, COG5437	NA	NA
UHGV-0160471_9	Structural annotation	PF05657	NA	NA
UHGV-0160471_10	eggNOG-mapper	1298920.KI911353_gene2654	NA	NA
UHGV-0160471_10	AcrCatalog	cluster_24841	NA	NA
UHGV-0160471_11	Structural annotation	PF07405, TIGR01563, COG5614	NA	NA
UHGV-0160471_12	PHROG	phrog_443	holin	lysis
UHGV-0160471_12	UniRef90	UniRef90_UPI000BA3B743	holin	NA
UHGV-0160471_12	eggNOG-mapper	411490.ANACAC_00704	Putative lactococcus lactis phage r1t holin	NA
UHGV-0160471_12	Pfam	PF16945	Putative lactococcus lactis phage r1t holin	Phage_r1t_holin
UHGV-0160471_12	Structural annotation	PF16945	NA	NA
UHGV-0160471_13	PHROG	phrog_4105	NA	unknown function
UHGV-0160471_13	eggNOG-mapper	411459.RUMOBE_00911	NA	NA
UHGV-0160471_14	eggNOG-mapper	397290.C810_01402	NA	NA
UHGV-0160471_15	UniRef90	UniRef90_A0A416G2T8	Rho_N domain-containing protein	NA
UHGV-0160471_15	Structural annotation	PF21169	NA	NA
UHGV-0160471_16	PHROG	phrog_29	major head protein	head and packaging
UHGV-0160471_16	UniRef90	UniRef90_A0A173UF26	Phage major capsid protein E	NA
UHGV-0160471_16	eggNOG-mapper	1118054.CAGW01000102_gene4700	Phage major capsid protein E	NA
UHGV-0160471_16	Pfam	PF03864	Phage major capsid protein E	Phage_cap_E
UHGV-0160471_16	Structural annotation	PF03864, MF_04133, NF041162, COG4653	NA	NA
UHGV-0160471_17	PHROG	phrog_909	major head protein	head and packaging
UHGV-0160471_17	UniRef90	UniRef90_R7BGI8	Phage major capsid protein	NA
UHGV-0160471_17	eggNOG-mapper	1536772.R70723_06665	NA	NA
UHGV-0160471_18	UniRef90	UniRef90_R6C0B6	Phage capsid scaffolding protein	NA
UHGV-0160471_19	PHROG	phrog_64	portal protein	head and packaging
UHGV-0160471_19	UniRef90	UniRef90_A0A173UGW9	Phage portal protein, SPP1 family	NA
UHGV-0160471_19	eggNOG-mapper	1298920.KI911353_gene2663	Phage portal protein, SPP1 Gp6-like	NA
UHGV-0160471_19	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0160471_19	Structural annotation	PF05133, MF_04120, TIGR01538, COG5511	NA	NA
UHGV-0160471_20	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0160471_20	UniRef90	UniRef90_UPI000FF89671	NA	NA
UHGV-0160471_20	eggNOG-mapper	994573.T472_0211085	sigma factor activity	NA
UHGV-0160471_20	COG	COG1191	DNA-directed RNA polymerase specialized sigma subunit	NA
UHGV-0160471_20	Structural annotation	PF07374, MF_00674, NF008895, COG1191	NA	NA
UHGV-0160471_21	PHROG	phrog_38	terminase large subunit	head and packaging
UHGV-0160471_21	UniRef90	UniRef90_UPI001D009E65	phage terminase large subunit	NA
UHGV-0160471_21	eggNOG-mapper	1121866.AUGK01000003_gene1428	chromosome segregation	NA
UHGV-0160471_21	NCBIFam	TIGR01630.1	phage terminase large subunit	NA
UHGV-0160471_21	COG	COG5410	NA	NA
UHGV-0160471_21	Structural annotation	PF17289, PF05876, MF_04147, NF033889, COG5362, COG5410	NA	NA
UHGV-0160471_24	UniRef90	UniRef90_A0A8D9PGN8	Acetyl-coA carboxylase zinc finger domain protein	NA
UHGV-0160471_26	Structural annotation	PF04466	NA	NA
UHGV-0160471_30	eggNOG-mapper	411473.RUMCAL_02525	NA	NA
UHGV-0160471_31	PHROG	phrog_229	MazG-like pyrophosphatase	other
UHGV-0160471_31	UniRef90	UniRef90_UPI001D02B1F9	nucleoside triphosphate pyrophosphohydrolase family protein	NA
UHGV-0160471_31	eggNOG-mapper	428125.CLOLEP_01391	MazG nucleotide pyrophosphohydrolase domain	NA
UHGV-0160471_31	Pfam	PF03819	MazG nucleotide pyrophosphohydrolase domain	MazG
UHGV-0160471_31	COG	COG1694	NTP pyrophosphatase, house-cleaning of non-canonical NTPs	NA
UHGV-0160471_31	Structural annotation	PF03819, MF_01020, TIGR03188, COG1694	NA	NA
UHGV-0160471_32	Structural annotation	PF10750, MF_00508, TIGR00166	NA	NA
UHGV-0160471_33	eggNOG-mapper	658655.HMPREF0988_00895	NA	NA
UHGV-0160471_37	eggNOG-mapper	1394176.AWUO01000014_gene642	NA	NA
UHGV-0160471_38	KOfam	K07727	K07727; putative transcriptional regulator	NA
UHGV-0160471_38	UniRef90	UniRef90_F7K072	HTH cro/C1-type domain-containing protein	NA
UHGV-0160471_38	eggNOG-mapper	411470.RUMGNA_00075	Cro/C1-type HTH DNA-binding domain	NA
UHGV-0160471_38	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-0160471_38	Structural annotation	PF13443, NF000090, COG3655	NA	NA
UHGV-0160471_41	PHROG	phrog_374	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0160471_41	UniRef90	UniRef90_A0A0R1VMU2	Pathogenesis-related transcriptional factor and ERF protein	NA
UHGV-0160471_41	eggNOG-mapper	1291743.LOSG293_110580	NA	NA
UHGV-0160471_41	Structural annotation	PF17375	NA	NA
UHGV-0160471_43	Structural annotation	PF20593	NA	NA
UHGV-0160471_47	PHROG	phrog_1233	NA	unknown function
UHGV-0160471_47	eggNOG-mapper	658655.HMPREF0988_00914	NA	NA
UHGV-0160471_48	eggNOG-mapper	658655.HMPREF0988_00915	NA	NA
UHGV-0160471_49	PHROG	phrog_20016	NA	unknown function
UHGV-0160471_49	UniRef90	UniRef90_A0A285PT46	Tumour necrosis factor-like domain	NA
UHGV-0160471_49	eggNOG-mapper	397290.C810_05214	NA	NA
UHGV-0160471_49	Structural annotation	PF18573, NF033147	NA	NA
UHGV-0160471_50	PHROG	phrog_16490	NA	unknown function
UHGV-0160471_50	eggNOG-mapper	397290.C810_01328	NA	NA
UHGV-0160471_51	eggNOG-mapper	658655.HMPREF0988_00918	NA	NA
UHGV-0160471_52	eggNOG-mapper	658655.HMPREF0988_00919	NA	NA
UHGV-0160471_54	KOfam	K14059	int; integrase	NA
UHGV-0160471_54	PHROG	phrog_1	integrase	integration and excision
UHGV-0160471_54	UniRef90	UniRef90_A0A173REA3	Site-specific tyrosine recombinase XerD	NA
UHGV-0160471_54	eggNOG-mapper	97139.C824_00125	Phage integrase family	NA
UHGV-0160471_54	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0160471_54	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0160471_54	Structural annotation	PF00589, PF02920, MF_02055, TIGR02224, COG4974	NA	NA
UHGV-0160471_55	UniRef90	UniRef90_A0A173RE24	Bacterial regulatory proteins, luxR family	NA
UHGV-0160471_55	Pfam	PF00196	Bacterial regulatory proteins, luxR family	GerE
UHGV-0160471_55	Structural annotation	PF00196, MF_00245, NF001067, COG2771	NA	NA
UHGV-0160471_56	KOfam	K00571	E2.1.1.72; site-specific DNA-methyltransferase (adenine-specific) [EC:2.1.1.72]	NA
UHGV-0160471_56	PHROG	phrog_23224	DNA methyltransferase	other
UHGV-0160471_56	UniRef90	UniRef90_A0A3R6JG61	Methyltransferase	NA
UHGV-0160471_56	eggNOG-mapper	981335.G4W934_9CAUD	N-methyltransferase activity	NA
UHGV-0160471_56	PADLOC	MTase_II_00172	Type II methyltransferase	RM
UHGV-0160471_56	Pfam	PF01555	DNA methylase	N6_N4_Mtase
UHGV-0160471_56	Structural annotation	PF01555, NF010253, COG0863	NA	NA
UHGV-0160471_58	PHROG	phrog_6724	NA	unknown function
UHGV-0160471_58	eggNOG-mapper	1463936.JOJI01000043_gene7935	NA	NA
UHGV-0160471_59	eggNOG-mapper	478749.BRYFOR_07594	NA	NA
UHGV-0160471_61	PHROG	phrog_874	NA	unknown function
UHGV-0160471_61	UniRef90	UniRef90_UPI0018F57B3A	ASCH domain-containing protein	NA
UHGV-0160471_61	eggNOG-mapper	411468.CLOSCI_00298	NA	NA
UHGV-0160471_61	Structural annotation	PF04266, MF_00684, NF003443, COG4405	NA	NA
UHGV-0160471_63	PHROG	phrog_20593	NA	unknown function
UHGV-0160471_64	PHROG	phrog_8684	NA	unknown function
UHGV-0160471_64	UniRef90	UniRef90_A0A416ZXS5	YopX domain-containing protein	NA
UHGV-0160471_64	eggNOG-mapper	411470.RUMGNA_02199	NA	NA
UHGV-0160471_64	Pfam	PF09643	YopX protein	YopX
UHGV-0160471_64	NCBIFam	TIGR01671.1	phage conserved hypothetical protein TIGR01671	NA
UHGV-0160471_64	Structural annotation	PF09643, TIGR01671	NA	NA
UHGV-0160471_65	PHROG	phrog_7711	NA	unknown function
UHGV-0160471_65	UniRef90	UniRef90_UPI001C38CAD2	Lar family restriction alleviation protein	NA
UHGV-0160471_65	eggNOG-mapper	268407.PWYN_15580	NA	NA
UHGV-0160471_66	eggNOG-mapper	476272.RUMHYD_03348	NA	NA
UHGV-0160471_67	PHROG	phrog_22292	NA	unknown function