UHGV-0160508

Genome information

Genome length 39,082 bps

CDS count 62

Completeness 95.33% (high-quality)

geNomad score 0.9730

Prediction confidence Confident

Genome information
Genome ID	UHGV-0160508
vOTU ID	vOTU-010696
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_488596
BioSample	NA
Country	Netherlands
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	95.33% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	24
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9730
Virus hallmark genes (geNomad)	8
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	45.37
Jumbo phage	No

Genome content
Genome length	39,082 bps
GC content	36.25%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	62
CDS density	93.27%
Average CDS length	593.13 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0160508_1	UniRef90	UniRef90_UPI001D084531	Arm DNA-binding domain-containing protein	NA
UHGV-0160508_1	eggNOG-mapper	552396.HMPREF0863_02449	Phage integrase, N-terminal SAM-like domain	NA
UHGV-0160508_1	Pfam	PF14657	Arm DNA-binding domain	Arm-DNA-bind_4
UHGV-0160508_1	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0160508_2	PHROG	phrog_9418	NA	unknown function
UHGV-0160508_2	eggNOG-mapper	411462.DORLON_00822	NA	NA
UHGV-0160508_2	Structural annotation	PF10233	NA	NA
UHGV-0160508_3	KOfam	K01356	lexA; repressor LexA [EC:3.4.21.88]	NA
UHGV-0160508_3	PHROG	phrog_4	transcriptional repressor	transcription regulation
UHGV-0160508_3	UniRef90	UniRef90_A0A4R3TF60	SOS-response transcriptional repressor LexA	NA
UHGV-0160508_3	eggNOG-mapper	552396.HMPREF0863_02447	Represses a number of genes involved in the response to DNA damage (SOS response)	NA
UHGV-0160508_3	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0160508_3	Pfam	PF00717	Peptidase S24-like	Peptidase_S24
UHGV-0160508_3	COG	COG1974	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	NA
UHGV-0160508_3	Structural annotation	PF00717, PF01381, MF_00015, TIGR00498, COG1974	NA	NA
UHGV-0160508_4	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0160508_4	UniRef90	UniRef90_A0A4R3TEI7	Helix-turn-helix protein	NA
UHGV-0160508_4	eggNOG-mapper	552396.HMPREF0863_02446	Cro/C1-type HTH DNA-binding domain	NA
UHGV-0160508_4	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-0160508_4	Structural annotation	PF01381, NF041951, COG3655	NA	NA
UHGV-0160508_9	PHROG	phrog_585	NA	unknown function
UHGV-0160508_9	UniRef90	UniRef90_UPI001F52F0FC	NA	NA
UHGV-0160508_9	eggNOG-mapper	1280692.AUJL01000009_gene2980	NA	NA
UHGV-0160508_9	Pfam	PF10711	NA	DUF2513
UHGV-0160508_9	Structural annotation	PF10711, MF_01819, TIGR03433, COG3432	NA	NA
UHGV-0160508_10	PHROG	phrog_373	anti-repressor	transcription regulation
UHGV-0160508_10	UniRef90	UniRef90_UPI000246CFB6	ORF6C domain-containing protein	NA
UHGV-0160508_10	eggNOG-mapper	1304866.K413DRAFT_3008	Phage regulatory protein	NA
UHGV-0160508_10	Pfam	PF10543	ORF6N domain	ORF6N
UHGV-0160508_10	Pfam	PF10552	ORF6C domain	ORF6C
UHGV-0160508_10	COG	COG3646	Phage regulatory protein Rha	NA
UHGV-0160508_10	Structural annotation	PF10552, PF10543, TIGR02681, COG3646	NA	NA
UHGV-0160508_12	Structural annotation	PF10922	NA	NA
UHGV-0160508_13	PHROG	phrog_2139	exonuclease	DNA, RNA and nucleotide metabolism
UHGV-0160508_13	UniRef90	UniRef90_UPI000246CFB3	PD-(D/E)XK nuclease family protein	NA
UHGV-0160508_13	eggNOG-mapper	428127.EUBDOL_01249	NA	NA
UHGV-0160508_13	Pfam	PF12705	PD-(D/E)XK nuclease superfamily	PDDEXK_1
UHGV-0160508_13	Structural annotation	PF12705, MF_03030, TIGR04328, COG2251	NA	NA
UHGV-0160508_14	PHROG	phrog_155	Erf-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0160508_14	UniRef90	UniRef90_UPI000246CFB2	ERF family protein	NA
UHGV-0160508_14	eggNOG-mapper	929506.CbC4_1193	ERF superfamily	NA
UHGV-0160508_14	Pfam	PF04404	ERF superfamily	ERF
UHGV-0160508_15	PHROG	phrog_7370	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0160508_15	UniRef90	UniRef90_UPI000C81F1CB	HNH endonuclease	NA
UHGV-0160508_15	eggNOG-mapper	1232449.BAHV02000016_gene1841	HNH nucleases	NA
UHGV-0160508_16	PHROG	phrog_72	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
UHGV-0160508_16	eggNOG-mapper	428127.EUBDOL_01246	NA	NA
UHGV-0160508_16	Pfam	PF05772	NinB protein	NinB
UHGV-0160508_16	Structural annotation	PF05772	NA	NA
UHGV-0160508_18	PHROG	phrog_20891	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0160508_18	UniRef90	UniRef90_UPI000246CFAF	HNH endonuclease	NA
UHGV-0160508_18	eggNOG-mapper	1444310.JANV01000162_gene1198	HNH endonuclease	NA
UHGV-0160508_18	Pfam	PF13392	HNH endonuclease	HNH_3
UHGV-0160508_19	PHROG	phrog_1163	NA	unknown function
UHGV-0160508_19	UniRef90	UniRef90_UPI000246CFAE	conserved phage C-terminal domain-containing protein	NA
UHGV-0160508_19	eggNOG-mapper	762051.LKI_09560	DnaD domain protein	NA
UHGV-0160508_19	Pfam	PF09524	Conserved phage C-terminus (Phg_2220_C)	Phg_2220_C
UHGV-0160508_19	NCBIFam	TIGR02220.1	phage conserved hypothetical protein, C-terminal domain	NA
UHGV-0160508_19	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0160508_19	Structural annotation	PF09681, TIGR01714	NA	NA
UHGV-0160508_21	Structural annotation	PF02768, PF02767, MF_00317, TIGR00663, COG0592	NA	NA
UHGV-0160508_23	KOfam	K03148	thiF; sulfur carrier protein ThiS adenylyltransferase [EC:2.7.7.73]	NA
UHGV-0160508_23	UniRef90	UniRef90_UPI001BCD2645	ThiF family adenylyltransferase	NA
UHGV-0160508_23	eggNOG-mapper	428127.EUBDOL_01242	ThiF family	NA
UHGV-0160508_23	Pfam	PF00899	ThiF family	ThiF
UHGV-0160508_23	COG	COG0476	Molybdopterin or thiamine biosynthesis adenylyltransferase	NA
UHGV-0160508_23	Structural annotation	PF00899, MF_03049, TIGR03736, COG0476	NA	NA
UHGV-0160508_25	UniRef90	UniRef90_A0A318KPZ6	E2/UBC family protein D	NA
UHGV-0160508_25	Structural annotation	PF14460, TIGR03737	NA	NA
UHGV-0160508_28	PHROG	phrog_874	NA	unknown function
UHGV-0160508_28	UniRef90	UniRef90_A0A3P6JHM7	Upf86.8	NA
UHGV-0160508_28	eggNOG-mapper	1232449.BAHV02000016_gene1832	NA	NA
UHGV-0160508_28	Structural annotation	PF04266, MF_00684, NF003443, COG4405	NA	NA
UHGV-0160508_30	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0160508_30	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0160508_30	UniRef90	UniRef90_A0A4R3TFM5	Single-stranded DNA-binding protein	NA
UHGV-0160508_30	eggNOG-mapper	552396.HMPREF0863_00560	COG COG0629 Single-stranded DNA-binding protein	NA
UHGV-0160508_30	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0160508_30	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0160508_30	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0160508_30	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0160508_30	Structural annotation	PF00436, MF_00984, NF005580, COG0629	NA	NA
UHGV-0160508_32	eggNOG-mapper	1123263.AUKY01000072_gene2097	NA	NA
UHGV-0160508_34	Pfam	PF12664	NA	DUF3789
UHGV-0160508_35	UniRef90	UniRef90_UPI000E419D63	sigma-70 family RNA polymerase sigma factor	NA
UHGV-0160508_35	Structural annotation	PF04545, PF01920, TIGR01636	NA	NA
UHGV-0160508_36	PHROG	phrog_4392	NA	unknown function
UHGV-0160508_38	KOfam	K07474	xtmA; phage terminase small subunit	NA
UHGV-0160508_38	PHROG	phrog_2606	terminase small subunit	head and packaging
UHGV-0160508_38	UniRef90	UniRef90_UPI000246D58D	terminase small subunit	NA
UHGV-0160508_38	eggNOG-mapper	1235800.C819_02241	terminase, small subunit	NA
UHGV-0160508_38	Pfam	PF03592	Terminase small subunit	Terminase_2
UHGV-0160508_38	COG	COG3728	Phage terminase, small subunit	NA
UHGV-0160508_38	Structural annotation	PF03592, PF10668, NF040601, COG3728	NA	NA
UHGV-0160508_39	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0160508_39	PHROG	phrog_29775	NA	unknown function
UHGV-0160508_39	UniRef90	UniRef90_UPI000E521D30	phage terminase large subunit	NA
UHGV-0160508_39	eggNOG-mapper	1151292.QEW_4394	Phage terminase large subunit	NA
UHGV-0160508_39	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-0160508_39	COG	COG1783	Phage terminase large subunit	NA
UHGV-0160508_39	Structural annotation	PF03237, PF17289, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-0160508_40	PHROG	phrog_533	portal protein	head and packaging
UHGV-0160508_40	UniRef90	UniRef90_UPI000E474B3E	capsid protein	NA
UHGV-0160508_40	eggNOG-mapper	1294142.CINTURNW_1024	NA	NA
UHGV-0160508_40	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-0160508_41	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0160508_41	UniRef90	UniRef90_A0A4R3TEM7	Minor capsid protein 2	NA
UHGV-0160508_41	eggNOG-mapper	552396.HMPREF0863_01630	Phage minor capsid protein 2	NA
UHGV-0160508_41	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0160508_41	Structural annotation	PF06152	NA	NA
UHGV-0160508_43	PHROG	phrog_419	NA	unknown function
UHGV-0160508_43	UniRef90	UniRef90_A6MAI4	Gp119	NA
UHGV-0160508_43	eggNOG-mapper	388452.A6MAI4_9CAUD	NA	NA
UHGV-0160508_43	Structural annotation	PF14083	NA	NA
UHGV-0160508_44	PHROG	phrog_2303	head scaffolding protein	head and packaging
UHGV-0160508_44	eggNOG-mapper	1304866.K413DRAFT_0806	NA	NA
UHGV-0160508_45	PHROG	phrog_212	major head protein	head and packaging
UHGV-0160508_45	UniRef90	UniRef90_UPI000E47E686	phage capsid protein	NA
UHGV-0160508_45	eggNOG-mapper	1262449.CP6013_3199	NA	NA
UHGV-0160508_45	Structural annotation	PF05065, MF_04119, NF041162, COG4653	NA	NA
UHGV-0160508_46	PHROG	phrog_10541	NA	unknown function
UHGV-0160508_46	UniRef90	UniRef90_A0A1M6EXN4	Rho termination factor, N-terminal domain	NA
UHGV-0160508_46	eggNOG-mapper	1395587.P364_0122060	NA	NA
UHGV-0160508_47	PHROG	phrog_541	head-tail adaptor	connector
UHGV-0160508_47	eggNOG-mapper	552396.HMPREF0863_01637	NA	NA
UHGV-0160508_48	PHROG	phrog_8710	NA	unknown function
UHGV-0160508_48	eggNOG-mapper	552396.HMPREF0863_01638	NA	NA
UHGV-0160508_48	Structural annotation	PF10665, TIGR01563, COG5614	NA	NA
UHGV-0160508_49	PHROG	phrog_556	minor head protein	head and packaging
UHGV-0160508_49	UniRef90	UniRef90_UPI000246D598	minor capsid protein	NA
UHGV-0160508_49	eggNOG-mapper	552396.HMPREF0863_01639	NA	NA
UHGV-0160508_49	Pfam	PF11114	Minor capsid protein	Minor_capsid_2
UHGV-0160508_50	PHROG	phrog_2595	head-tail connector protein	connector
UHGV-0160508_50	UniRef90	UniRef90_UPI001D0A149F	minor capsid protein	NA
UHGV-0160508_50	eggNOG-mapper	552396.HMPREF0863_01640	NA	NA
UHGV-0160508_50	Pfam	PF12691	Bacteriophage minor capsid protein	Minor_capsid_3
UHGV-0160508_50	Structural annotation	PF12691, COG5003	NA	NA
UHGV-0160508_51	PHROG	phrog_820	major tail protein	tail
UHGV-0160508_51	UniRef90	UniRef90_A0A7D6ZFT1	Ig-like domain-containing protein	NA
UHGV-0160508_51	eggNOG-mapper	552396.HMPREF0863_01641	domain, Protein	NA
UHGV-0160508_51	COG	COG5492	NA	NA
UHGV-0160508_51	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-0160508_52	PHROG	phrog_8300	NA	unknown function
UHGV-0160508_52	eggNOG-mapper	658659.HMPREF0983_03300	NA	NA
UHGV-0160508_52	Structural annotation	PF06896	NA	NA
UHGV-0160508_53	PHROG	phrog_8355	NA	unknown function
UHGV-0160508_53	UniRef90	UniRef90_A0A4R3TDU8	Bacteriophage Gp15 protein	NA
UHGV-0160508_53	eggNOG-mapper	552396.HMPREF0863_01643	NA	NA
UHGV-0160508_54	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-0160508_54	UniRef90	UniRef90_A0A4R3TDI6	Phage-related protein	NA
UHGV-0160508_54	eggNOG-mapper	552396.HMPREF0863_01644	phage tail tape measure protein	NA
UHGV-0160508_54	COG	COG1511	NA	NA
UHGV-0160508_55	PHROG	phrog_1194	NA	unknown function
UHGV-0160508_55	eggNOG-mapper	552396.HMPREF0863_01645	NA	NA
UHGV-0160508_55	Structural annotation	PF20458, TIGR02126, COG3499	NA	NA
UHGV-0160508_56	PHROG	phrog_1401	NA	unknown function
UHGV-0160508_56	eggNOG-mapper	1262449.CP6013_3212	NA	NA
UHGV-0160508_56	Structural annotation	PF07761	NA	NA
UHGV-0160508_57	PHROG	phrog_16267	NA	unknown function
UHGV-0160508_57	UniRef90	UniRef90_U5F6T9	Peptidase S74 domain-containing protein	NA
UHGV-0160508_57	eggNOG-mapper	552396.HMPREF0863_01647	Phage minor structural protein	NA
UHGV-0160508_57	Pfam	PF13884	Chaperone of endosialidase	Peptidase_S74
UHGV-0160508_57	COG	COG4926	Phage-related protein	NA
UHGV-0160508_57	Structural annotation	PF05113, NF033848, COG3500	NA	NA
UHGV-0160508_59	PHROG	phrog_199	holin	lysis
UHGV-0160508_59	UniRef90	UniRef90_A0A4R3TDP9	Cph1 family holin	NA
UHGV-0160508_59	eggNOG-mapper	469596.HMPREF9488_01337	Bacteriophage holin family	NA
UHGV-0160508_59	Pfam	PF05105	Bacteriophage holin family	Phage_holin_4_1
UHGV-0160508_59	NCBIFam	TIGR01593.1	toxin secretion/phage lysis holin	NA
UHGV-0160508_59	COG	COG4824	Phage-related holin (Lysis protein)	NA
UHGV-0160508_59	Structural annotation	PF05105, TIGR01593, COG4824	NA	NA
UHGV-0160508_60	KOfam	K01448	amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0160508_60	PHROG	phrog_435	endolysin	lysis
UHGV-0160508_60	UniRef90	UniRef90_UPI001BD160C7	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0160508_60	eggNOG-mapper	552396.HMPREF0863_00263	hmm pf01520	NA
UHGV-0160508_60	Pfam	PF01520	N-acetylmuramoyl-L-alanine amidase	Amidase_3
UHGV-0160508_60	COG	COG0860	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0160508_60	Structural annotation	PF01520, PF05036, MF_02022, MF_00562, TIGR02883, COG0860, COG3147	NA	NA
UHGV-0160508_61	KOfam	K07699	spo0A; two-component system, response regulator, stage 0 sporulation protein A	NA
UHGV-0160508_61	PHROG	phrog_37855	NA	unknown function
UHGV-0160508_61	UniRef90	UniRef90_UPI000246D69D	sporulation initiation factor Spo0A C-terminal domain-containing protein	NA
UHGV-0160508_61	eggNOG-mapper	1340434.AXVA01000005_gene4943	May play the central regulatory role in sporulation. It may be an element of the effector pathway responsible for the activation of sporulation genes in response to nutritional stress. Spo0A may act in concert with spo0H (a sigma factor) to control the expression of some genes that are critical to the sporulation process	NA
UHGV-0160508_61	Pfam	PF08769	Sporulation initiation factor Spo0A C terminal	Spo0A_C
UHGV-0160508_61	COG	COG0745	DNA-binding response regulator, OmpR family, contains REC and winged-helix (wHTH) domain	NA
UHGV-0160508_61	Structural annotation	PF08769, TIGR02875	NA	NA