UHGV-0160551

Genome information

Genome length 40,021 bps

CDS count 71

Completeness 99.90% (high-quality)

geNomad score 0.9710

Prediction confidence Confident

Genome information
Genome ID	UHGV-0160551
vOTU ID	vOTU-008590
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_447268
BioSample	SAMN05971426
Country	United States
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	99.90% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	16
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9710
Virus hallmark genes (geNomad)	11
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	41.77
Jumbo phage	No

Genome content
Genome length	40,021 bps
GC content	27.70%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	71
CDS density	91.82%
Average CDS length	520.82 bps
tRNA count	2
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0160551_1	KOfam	K14059	int; integrase	NA
UHGV-0160551_1	PHROG	phrog_1	integrase	integration and excision
UHGV-0160551_1	UniRef90	UniRef90_UPI0015C5C81A	site-specific integrase	NA
UHGV-0160551_1	eggNOG-mapper	428125.CLOLEP_02743	Belongs to the 'phage' integrase family	NA
UHGV-0160551_1	Pfam	PF14659	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
UHGV-0160551_1	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0160551_1	COG	COG4974	Site-specific recombinase XerD	NA
UHGV-0160551_1	Structural annotation	PF00589, PF14659, MF_02055, TIGR02224, COG4974	NA	NA
UHGV-0160551_2	PHROG	phrog_87	metallo-protease	other
UHGV-0160551_2	UniRef90	UniRef90_UPI001C10EA02	ImmA/IrrE family metallo-endopeptidase	NA
UHGV-0160551_2	eggNOG-mapper	1499683.CCFF01000017_gene2620	Zn peptidase	NA
UHGV-0160551_2	COG	COG2856	Zn-dependent peptidase ImmA, M78 family	NA
UHGV-0160551_2	Structural annotation	PF06114, COG2856	NA	NA
UHGV-0160551_4	KOfam	K22299	rghR; HTH-type transcriptional regulator, competence development regulator	NA
UHGV-0160551_4	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0160551_4	UniRef90	UniRef90_A0A1Q6K3F1	HTH cro/C1-type domain-containing protein	NA
UHGV-0160551_4	eggNOG-mapper	632335.Calkr_0079	SMART helix-turn-helix domain protein	NA
UHGV-0160551_4	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0160551_4	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-0160551_4	Structural annotation	PF01381, MF_00535, NF041951, COG1476	NA	NA
UHGV-0160551_5	KOfam	K07729	K07729; putative transcriptional regulator	NA
UHGV-0160551_5	PHROG	phrog_3	transcriptional repressor	transcription regulation
UHGV-0160551_5	UniRef90	UniRef90_A0A1Q6K3M2	HTH cro/C1-type domain-containing protein	NA
UHGV-0160551_5	eggNOG-mapper	755731.Clo1100_0531	Helix-turn-helix XRE-family like proteins	NA
UHGV-0160551_5	PADLOC	retron_type_VI_hth_cluster2_1	NA	Retron
UHGV-0160551_5	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0160551_5	Structural annotation	PF01381, NF041951, COG1476	NA	NA
UHGV-0160551_6	Structural annotation	PF09035, NF040990, COG3311	NA	NA
UHGV-0160551_11	PHROG	phrog_7566	NA	unknown function
UHGV-0160551_12	KOfam	K17081	PHB2; prohibitin 2	NA
UHGV-0160551_12	PHROG	phrog_200	lipoprotein	other
UHGV-0160551_12	UniRef90	UniRef90_UPI001AE01263	prohibitin family protein	NA
UHGV-0160551_12	eggNOG-mapper	1461580.CCAS010000086_gene4344	COG0330 Membrane protease subunits, stomatin prohibitin homologs	NA
UHGV-0160551_12	Pfam	PF01145	SPFH domain / Band 7 family	Band_7
UHGV-0160551_12	COG	COG0330	Regulator of protease activity HflC, stomatin/prohibitin superfamily	NA
UHGV-0160551_12	Structural annotation	PF01145, MF_01562, NF008181, COG0330	NA	NA
UHGV-0160551_13	KOfam	K07741	antB; anti-repressor protein	NA
UHGV-0160551_13	PHROG	phrog_130	anti-repressor Ant	transcription regulation
UHGV-0160551_13	UniRef90	UniRef90_UPI001DE99507	phage antirepressor	NA
UHGV-0160551_13	eggNOG-mapper	1391647.AVSV01000003_gene1780	Phage antirepressor protein	NA
UHGV-0160551_13	Pfam	PF02498	BRO family, N-terminal domain	Bro-N
UHGV-0160551_13	Pfam	PF03374	Phage antirepressor protein KilAC domain	ANT
UHGV-0160551_13	COG	COG3617	Prophage antirepressor	NA
UHGV-0160551_13	Structural annotation	PF03374, PF02498, TIGR02681, COG3617, COG3645	NA	NA
UHGV-0160551_14	PHROG	phrog_19658	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0160551_14	UniRef90	UniRef90_A0A377KMD4	Replication initiation and membrane attachment	NA
UHGV-0160551_14	eggNOG-mapper	796940.HMPREF9628_00167	NA	NA
UHGV-0160551_14	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0160551_14	Structural annotation	PF03444, NF041413, COG5625	NA	NA
UHGV-0160551_27	PHROG	phrog_355	nucleoside 2-deoxyribosyltransferase	DNA, RNA and nucleotide metabolism
UHGV-0160551_27	UniRef90	UniRef90_UPI0013ED9517	NA	NA
UHGV-0160551_27	eggNOG-mapper	397290.C810_05229	NA	NA
UHGV-0160551_27	Pfam	PF14359	NA	DUF4406
UHGV-0160551_27	Structural annotation	PF14359, MF_03036, TIGR03646, COG3613	NA	NA
UHGV-0160551_30	Structural annotation	PF09871, TIGR00739	NA	NA
UHGV-0160551_31	PHROG	phrog_20229	NA	unknown function
UHGV-0160551_31	UniRef90	UniRef90_D7GQL4	Transmembrane Fragile-X-F protein	NA
UHGV-0160551_31	eggNOG-mapper	1141106.CAIB01000118_gene947	NA	NA
UHGV-0160551_34	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0160551_34	Structural annotation	PF15456, NF008895, COG5034	NA	NA
UHGV-0160551_37	KOfam	K00754	bshA; L-malate glycosyltransferase [EC:2.4.1.-]	NA
UHGV-0160551_37	UniRef90	UniRef90_A0A843FNJ0	Glycosyltransferase	NA
UHGV-0160551_37	eggNOG-mapper	1280694.AUJQ01000003_gene1521	glycosyl transferase group 1	NA
UHGV-0160551_37	Pfam	PF00534	Glycosyl transferases group 1	Glycos_transf_1
UHGV-0160551_37	COG	COG0438	Glycosyltransferase involved in cell wall bisynthesis	NA
UHGV-0160551_37	Structural annotation	PF00534, PF16994, MF_01472, TIGR04005, COG0438	NA	NA
UHGV-0160551_38	PHROG	phrog_144	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0160551_38	UniRef90	UniRef90_UPI001B82F799	HNH endonuclease	NA
UHGV-0160551_38	eggNOG-mapper	1219626.HMPREF1639_07400	Endonuclease	NA
UHGV-0160551_38	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0160551_38	Structural annotation	PF09889, COG4068	NA	NA
UHGV-0160551_40	PHROG	phrog_83	terminase small subunit	head and packaging
UHGV-0160551_40	UniRef90	UniRef90_A0A6B4P9L5	Phage terminase small subunit P27 family	NA
UHGV-0160551_40	eggNOG-mapper	1219626.HMPREF1639_07405	phage terminase small subunit	NA
UHGV-0160551_40	Pfam	PF05119	Phage terminase, small subunit	Terminase_4
UHGV-0160551_40	NCBIFam	TIGR01558.1	phage terminase small subunit P27 family	NA
UHGV-0160551_40	COG	COG3747	Phage terminase, small subunit	NA
UHGV-0160551_40	Structural annotation	PF05119, TIGR01558, COG3747	NA	NA
UHGV-0160551_41	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0160551_41	UniRef90	UniRef90_A0A1C5VGI7	Phage terminase-like protein, large subunit	NA
UHGV-0160551_41	eggNOG-mapper	1219626.HMPREF1639_07410	Phage terminase-like protein large subunit	NA
UHGV-0160551_41	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0160551_41	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0160551_41	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0160551_41	Structural annotation	PF20441, PF03354, MF_04146, TIGR01547, COG4626	NA	NA
UHGV-0160551_42	PHROG	phrog_12	portal protein	head and packaging
UHGV-0160551_42	UniRef90	UniRef90_UPI001B8210D7	phage portal protein	NA
UHGV-0160551_42	eggNOG-mapper	634956.Geoth_0787	Phage portal protein	NA
UHGV-0160551_42	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0160551_42	NCBIFam	TIGR01537.1	phage portal protein	NA
UHGV-0160551_42	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0160551_42	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-0160551_43	PHROG	phrog_16951	NA	unknown function
UHGV-0160551_43	eggNOG-mapper	1410617.JHXH01000012_gene652	NA	NA
UHGV-0160551_43	Structural annotation	PF04586, TIGR01543, COG3740	NA	NA
UHGV-0160551_44	PHROG	phrog_10	major head protein	head and packaging
UHGV-0160551_44	UniRef90	UniRef90_UPI000C087E3A	phage major capsid protein	NA
UHGV-0160551_44	eggNOG-mapper	1219626.HMPREF1639_07425	Phage capsid family	NA
UHGV-0160551_44	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0160551_44	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0160551_44	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0160551_44	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0160551_45	PHROG	phrog_5223	neck protein	connector
UHGV-0160551_46	PHROG	phrog_1951	head-tail adaptor	connector
UHGV-0160551_46	UniRef90	UniRef90_A0A1G5XN47	Phage head-tail adaptor, putative, SPP1 family	NA
UHGV-0160551_46	eggNOG-mapper	1497679.EP56_05745	head-tail adaptor	NA
UHGV-0160551_46	NCBIFam	TIGR01563.1	phage head closure protein	NA
UHGV-0160551_46	COG	COG5614	Phage head-tail adaptor	NA
UHGV-0160551_46	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0160551_47	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0160551_47	UniRef90	UniRef90_A0A0B5APK7	Prophage pi2 protein 37	NA
UHGV-0160551_47	eggNOG-mapper	411468.CLOSCI_00545	COG NOG18351 non supervised orthologous group	NA
UHGV-0160551_47	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-0160551_47	Structural annotation	PF20039, TIGR01725, COG5005	NA	NA
UHGV-0160551_48	Structural annotation	PF05657, MF_00281, COG0016	NA	NA
UHGV-0160551_49	PHROG	phrog_88	major tail protein	tail
UHGV-0160551_49	UniRef90	UniRef90_A0A1E8RGF9	Phage tail protein	NA
UHGV-0160551_49	eggNOG-mapper	1111134.HMPREF1253_0377	Phage major tail protein, phi13 family	NA
UHGV-0160551_49	Pfam	PF06488	Phage tail tube protein	L_lac_phage_MSP
UHGV-0160551_49	NCBIFam	TIGR01603.1	major tail protein	NA
UHGV-0160551_49	Structural annotation	PF06488, TIGR01603, COG3498	NA	NA
UHGV-0160551_50	PHROG	phrog_709	NA	unknown function
UHGV-0160551_50	Structural annotation	PF11836	NA	NA
UHGV-0160551_52	KOfam	K20283	GOLGA4; golgin subfamily A member 4	NA
UHGV-0160551_52	PHROG	phrog_1533	tail length tape measure protein	tail
UHGV-0160551_52	UniRef90	UniRef90_A0A143ZV16	Phage-related minor tail protein	NA
UHGV-0160551_52	eggNOG-mapper	748727.CLJU_c03660	tail tape measure protein	NA
UHGV-0160551_52	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-0160551_52	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-0160551_52	COG	COG5283	Phage-related tail protein	NA
UHGV-0160551_53	PHROG	phrog_5319	outer membrane protein	other
UHGV-0160551_53	UniRef90	UniRef90_A0A4R4FCE5	Zinc ribbon domain-containing protein	NA
UHGV-0160551_53	eggNOG-mapper	1042156.CXIVA_15870	sh3 domain protein	NA
UHGV-0160551_53	COG	COG3103	NA	NA
UHGV-0160551_54	eggNOG-mapper	411471.SUBVAR_05861	NA	NA
UHGV-0160551_54	Structural annotation	PF16774, PF20753, TIGR01633, COG4722	NA	NA
UHGV-0160551_55	UniRef90	UniRef90_A0A1Q6K3Z9	Ricin B-type lectin domain-containing protein	NA
UHGV-0160551_55	eggNOG-mapper	936574.HMPREF1508_2015	Hydrolase Family 25	NA
UHGV-0160551_55	Pfam	PF14200	Ricin-type beta-trefoil lectin domain-like	RicinB_lectin_2
UHGV-0160551_55	COG	COG2755	Lysophospholipase L1 or related esterase. Includes spore coat protein LipC/YcsK	NA
UHGV-0160551_55	Structural annotation	PF00652, PF19586, PF13004, NF035930, COG4379	NA	NA
UHGV-0160551_56	Structural annotation	PF20747	NA	NA
UHGV-0160551_57	UniRef90	UniRef90_A0A1Q6M1V5	Fibronectin type-III domain-containing protein	NA
UHGV-0160551_57	Structural annotation	PF05895, MF_00791, NF010681, COG2967	NA	NA
UHGV-0160551_59	eggNOG-mapper	910314.HMPREF9220_1078	NA	NA
UHGV-0160551_59	Structural annotation	PF16407, NF032891, COG5456	NA	NA
UHGV-0160551_61	PHROG	phrog_24103	NA	unknown function
UHGV-0160551_61	eggNOG-mapper	742742.HMPREF9452_01288	NA	NA
UHGV-0160551_65	Structural annotation	PF06946	NA	NA
UHGV-0160551_66	UniRef90	UniRef90_R7F968	Peptidoglycan-binding domain 1 protein	NA
UHGV-0160551_66	eggNOG-mapper	1121422.AUMW01000009_gene3264	Papain-like cysteine protease AvrRpt2	NA
UHGV-0160551_66	Pfam	PF13529	Peptidase_C39 like family	Peptidase_C39_2
UHGV-0160551_66	Pfam	PF08239	Bacterial SH3 domain	SH3_3
UHGV-0160551_66	COG	COG0768	Cell division protein FtsI, peptidoglycan transpeptidase (Penicillin-binding protein 2)	NA
UHGV-0160551_66	Structural annotation	PF03412, PF08239, NF040678, COG3807, COG3271	NA	NA
UHGV-0160551_67	UniRef90	UniRef90_A0A1B6B8B5	PBECR3 domain-containing protein	NA
UHGV-0160551_67	eggNOG-mapper	931276.Cspa_c12750	NA	NA
UHGV-0160551_67	Pfam	PF18812	phage-Barnase-EndoU-ColicinE5/D-RelE like nuclease3	PBECR3
UHGV-0160551_67	Structural annotation	PF18812, COG2929	NA	NA