UHGV-0160617

Genome information

Genome length 25,220 bps

CDS count 43

Completeness 71.68% (medium-quality)

geNomad score 0.9609

Prediction confidence Confident

Genome information
Genome ID	UHGV-0160617
vOTU ID	vOTU-027986
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_489274
BioSample	SAMN06110242
Country	Netherlands
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	71.68% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	12
CheckV host markers	2
Recoded stop codon	No

Viral signal
geNomad score	0.9609
Virus hallmark genes (geNomad)	8
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	24.35
Jumbo phage	No

Genome content
Genome length	25,220 bps
GC content	39.08%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	43
CDS density	85.90%
Average CDS length	507.56 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0160617_1	UniRef90	UniRef90_A0A1G5HYE5	Helix-turn-helix domain-containing protein	NA
UHGV-0160617_1	eggNOG-mapper	1235835.C814_02510	NA	NA
UHGV-0160617_1	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0160617_2	UniRef90	UniRef90_A0A7X3MDY8	Sigma-70 family RNA polymerase sigma factor	NA
UHGV-0160617_2	eggNOG-mapper	1280679.ATVX01000013_gene2600	DNA-templated transcription, initiation	NA
UHGV-0160617_2	COG	COG1595	DNA-directed RNA polymerase specialized sigma subunit, sigma24 family	NA
UHGV-0160617_3	KOfam	K07171	mazF, ndoA, chpA; mRNA interferase MazF [EC:3.1.-.-]	NA
UHGV-0160617_3	PHROG	phrog_1936	MazF-like growth inhibitor	moron, auxiliary metabolic gene and host takeover
UHGV-0160617_3	UniRef90	UniRef90_A0A292RL61	mRNA interferase	NA
UHGV-0160617_3	eggNOG-mapper	1284686.HMPREF1630_04845	Toxic component of a toxin-antitoxin (TA) module	NA
UHGV-0160617_3	Pfam	PF02452	PemK-like, MazF-like toxin of type II toxin-antitoxin system	PemK_toxin
UHGV-0160617_3	COG	COG2337	mRNA-degrading endonuclease MazF, toxin component of the MazEF toxin-antitoxin module	NA
UHGV-0160617_3	Structural annotation	PF02452, NF007386, COG2337	NA	NA
UHGV-0160617_4	UniRef90	UniRef90_A0A292RKW7	NA	NA
UHGV-0160617_4	Pfam	PF12664	NA	DUF3789
UHGV-0160617_6	KOfam	K06400	spoIVCA; site-specific DNA recombinase	NA
UHGV-0160617_6	PHROG	phrog_95	integrase	integration and excision
UHGV-0160617_6	UniRef90	UniRef90_A0A1G5IPF8	Site-specific DNA recombinase	NA
UHGV-0160617_6	eggNOG-mapper	877411.JMMA01000002_gene617	NA	NA
UHGV-0160617_6	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-0160617_6	Pfam	PF07508	Recombinase	Recombinase
UHGV-0160617_6	Pfam	PF13408	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
UHGV-0160617_6	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-0160617_6	Structural annotation	PF07508, PF00239, PF18822, NF041201, COG1961	NA	NA
UHGV-0160617_7	KOfam	K14059	int; integrase	NA
UHGV-0160617_7	PHROG	phrog_1	integrase	integration and excision
UHGV-0160617_7	UniRef90	UniRef90_A0A1G5CL52	Phage integrase family protein	NA
UHGV-0160617_7	eggNOG-mapper	693746.OBV_41260	Belongs to the 'phage' integrase family	NA
UHGV-0160617_7	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0160617_7	COG	COG4974	Site-specific recombinase XerD	NA
UHGV-0160617_7	Structural annotation	PF00589, MF_01808, NF007246, COG4974	NA	NA
UHGV-0160617_8	UniRef90	UniRef90_UPI000E52DA24	zinc ribbon domain-containing protein	NA
UHGV-0160617_8	Pfam	PF13240	zinc-ribbon domain	zinc_ribbon_2
UHGV-0160617_8	Structural annotation	PF18933, PF02883, MF_02248, NF008627, COG5435, COG2847	NA	NA
UHGV-0160617_9	PHROG	phrog_1914	NA	unknown function
UHGV-0160617_9	UniRef90	UniRef90_A0A374NDM7	ImmA/IrrE family metallo-endopeptidase	NA
UHGV-0160617_9	eggNOG-mapper	1160721.RBI_I01604	NA	NA
UHGV-0160617_9	Pfam	PF06114	IrrE N-terminal-like domain	Peptidase_M78
UHGV-0160617_9	COG	COG2856	Zn-dependent peptidase ImmA, M78 family	NA
UHGV-0160617_9	Structural annotation	PF06114, COG2856	NA	NA
UHGV-0160617_10	UniRef90	UniRef90_A0A373XLN2	XRE family transcriptional regulator	NA
UHGV-0160617_10	eggNOG-mapper	1408823.AXUS01000025_gene2653	NA	NA
UHGV-0160617_10	Structural annotation	PF05339, NF007257, COG3655	NA	NA
UHGV-0160617_11	UniRef90	UniRef90_A0A374DVN3	DNA-binding protein	NA
UHGV-0160617_11	eggNOG-mapper	1219626.HMPREF1639_07045	NA	NA
UHGV-0160617_13	PHROG	phrog_585	NA	unknown function
UHGV-0160617_13	UniRef90	UniRef90_UPI00051C896C	NA	NA
UHGV-0160617_13	eggNOG-mapper	1033744.CAEL01000029_gene1306	NA	NA
UHGV-0160617_13	Pfam	PF10711	NA	DUF2513
UHGV-0160617_13	Structural annotation	PF10711, MF_01819, TIGR03433, COG3432	NA	NA
UHGV-0160617_15	PHROG	phrog_8684	NA	unknown function
UHGV-0160617_15	UniRef90	UniRef90_UPI000E48855B	YopX family protein	NA
UHGV-0160617_15	eggNOG-mapper	1458852.A0A059T7V5_9CAUD	YopX protein	NA
UHGV-0160617_15	Pfam	PF09643	YopX protein	YopX
UHGV-0160617_15	NCBIFam	TIGR01671.1	phage conserved hypothetical protein TIGR01671	NA
UHGV-0160617_15	Structural annotation	PF09643, TIGR01671	NA	NA
UHGV-0160617_16	UniRef90	UniRef90_UPI0015F48AC0	Lar family restriction alleviation protein	NA
UHGV-0160617_16	Pfam	PF14354	Restriction alleviation protein Lar	Lar_restr_allev
UHGV-0160617_16	Structural annotation	PF14354, TIGR03655	NA	NA
UHGV-0160617_17	PHROG	phrog_6058	NA	unknown function
UHGV-0160617_17	Structural annotation	NF033787	NA	NA
UHGV-0160617_18	Structural annotation	COG1862	NA	NA
UHGV-0160617_20	KOfam	K03497	parB, spo0J; ParB family transcriptional regulator, chromosome partitioning protein	NA
UHGV-0160617_20	PHROG	phrog_6218	ParB-like partition protein	DNA, RNA and nucleotide metabolism
UHGV-0160617_20	UniRef90	UniRef90_A0A3D3D7T1	ParB domain-containing protein	NA
UHGV-0160617_20	eggNOG-mapper	1160721.RBI_I01596	ParB-like nuclease domain	NA
UHGV-0160617_20	Pfam	PF02195	ParB/Sulfiredoxin domain	ParBc
UHGV-0160617_20	NCBIFam	TIGR00180.1	ParB/RepB/Spo0J family partition protein	NA
UHGV-0160617_20	COG	COG1475	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	NA
UHGV-0160617_20	Structural annotation	PF18579, MF_02015, TIGR00180, COG1475	NA	NA
UHGV-0160617_22	PHROG	phrog_24518	NA	unknown function
UHGV-0160617_22	eggNOG-mapper	1519439.JPJG01000077_gene922	NA	NA
UHGV-0160617_23	PHROG	phrog_824	NA	unknown function
UHGV-0160617_23	UniRef90	UniRef90_A0A3D3D6C6	VRR-NUC domain-containing protein	NA
UHGV-0160617_23	eggNOG-mapper	397288.C806_00096	VRR_NUC	NA
UHGV-0160617_23	Pfam	PF08774	VRR-NUC domain	VRR_NUC
UHGV-0160617_23	Structural annotation	PF08774	NA	NA
UHGV-0160617_26	PHROG	phrog_2118	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0160617_26	UniRef90	UniRef90_A0A374DVG7	HNH endonuclease	NA
UHGV-0160617_26	eggNOG-mapper	610130.Closa_0730	HNH endonuclease	NA
UHGV-0160617_26	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0160617_26	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0160617_26	Structural annotation	TIGR02646, COG1403	NA	NA
UHGV-0160617_27	UniRef90	UniRef90_UPI000E4DC4DA	helix-turn-helix domain-containing protein	NA
UHGV-0160617_27	Structural annotation	PF15597	NA	NA
UHGV-0160617_29	KOfam	K07039	NA	NA
UHGV-0160617_29	eggNOG-mapper	1268068.PG5_50620	SEC-C Motif Domain Protein	NA
UHGV-0160617_29	Pfam	PF02810	SEC-C motif	SEC-C
UHGV-0160617_29	COG	COG3012	NA	NA
UHGV-0160617_32	PHROG	phrog_3584	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0160617_32	eggNOG-mapper	1235800.C819_00515	NA	NA
UHGV-0160617_32	Structural annotation	PF21578, NF041486	NA	NA
UHGV-0160617_33	PHROG	phrog_31049	NA	unknown function
UHGV-0160617_33	eggNOG-mapper	431943.CKL_4074	NA	NA
UHGV-0160617_33	Structural annotation	TIGR01636	NA	NA
UHGV-0160617_34	PHROG	phrog_119	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0160617_34	UniRef90	UniRef90_A0A412ULY9	HNH endonuclease	NA
UHGV-0160617_34	eggNOG-mapper	1158607.UAU_01026	HNH endonuclease	NA
UHGV-0160617_34	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0160617_34	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0160617_35	PHROG	phrog_5110	terminase small subunit	head and packaging
UHGV-0160617_35	UniRef90	UniRef90_A0A1M5U1D5	Phage terminase, small subunit	NA
UHGV-0160617_35	eggNOG-mapper	1211817.CCAT010000053_gene2128	NA	NA
UHGV-0160617_35	Pfam	PF05119	Phage terminase, small subunit	Terminase_4
UHGV-0160617_35	Structural annotation	PF05119, TIGR01558, COG3747	NA	NA
UHGV-0160617_36	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0160617_36	UniRef90	UniRef90_A0A412UM03	Terminase large subunit	NA
UHGV-0160617_36	eggNOG-mapper	86416.Clopa_0337	Phage Terminase	NA
UHGV-0160617_36	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0160617_36	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0160617_36	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0160617_36	Structural annotation	PF20441, PF03354, MF_04146, TIGR01547, COG4626	NA	NA
UHGV-0160617_37	PHROG	phrog_12	portal protein	head and packaging
UHGV-0160617_37	UniRef90	UniRef90_A0A412ULV9	Phage portal protein	NA
UHGV-0160617_37	eggNOG-mapper	349161.Dred_2606	Phage portal protein, HK97 family	NA
UHGV-0160617_37	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0160617_37	NCBIFam	TIGR01537.1	phage portal protein	NA
UHGV-0160617_37	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0160617_37	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-0160617_38	KOfam	K01358	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	NA
UHGV-0160617_38	PHROG	phrog_94	head maturation protease	head and packaging
UHGV-0160617_38	UniRef90	UniRef90_A0A412ULU1	ATP-dependent Clp protease proteolytic subunit	NA
UHGV-0160617_38	eggNOG-mapper	1211817.CCAT010000053_gene2131	Belongs to the peptidase S14 family	NA
UHGV-0160617_38	Pfam	PF00574	Clp protease	CLP_protease
UHGV-0160617_38	COG	COG0740	ATP-dependent protease ClpP, protease subunit	NA
UHGV-0160617_38	Structural annotation	PF00574, MF_00444, NF011090, COG0740	NA	NA
UHGV-0160617_39	PHROG	phrog_10	major head protein	head and packaging
UHGV-0160617_39	UniRef90	UniRef90_A0A412ULW9	Phage major capsid protein	NA
UHGV-0160617_39	eggNOG-mapper	349161.Dred_2604	Phage capsid family	NA
UHGV-0160617_39	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0160617_39	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0160617_39	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0160617_39	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0160617_40	PHROG	phrog_749	NA	unknown function
UHGV-0160617_40	UniRef90	UniRef90_A0A1G5CMX8	Phage gp6-like head-tail connector protein	NA
UHGV-0160617_40	eggNOG-mapper	1211817.CCAT010000053_gene2133	NA	NA
UHGV-0160617_41	PHROG	phrog_19734	NA	unknown function
UHGV-0160617_41	UniRef90	UniRef90_UPI00057FE645	phage head closure protein	NA
UHGV-0160617_41	eggNOG-mapper	86416.Clopa_0343	NA	NA
UHGV-0160617_41	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0160617_42	Structural annotation	PF05657, MF_00281, COG0016	NA	NA
UHGV-0160617_43	UniRef90	UniRef90_UPI000E5564A4	HK97 gp10 family phage protein	NA
UHGV-0160617_43	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like