UHGV-0160621

Genome information

Genome length 40,233 bps

CDS count 65

Completeness 99.90% (high-quality)

geNomad score 0.9804

Prediction confidence Confident

Genome information
Genome ID	UHGV-0160621
vOTU ID	vOTU-010698
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_460316
BioSample	NA
Country	United States
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	99.90% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	Yes
CheckV viral markers	20
CheckV host markers	2
Recoded stop codon	No

Viral signal
geNomad score	0.9804
Virus hallmark genes (geNomad)	10
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	44.59
Jumbo phage	No

Genome content
Genome length	40,233 bps
GC content	42.18%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	65
CDS density	92.86%
Average CDS length	576.92 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0160621_1	KOfam	K03086	rpoD; RNA polymerase primary sigma factor	NA
UHGV-0160621_1	PHROG	phrog_351	RNA polymerase sigma factor	transcription regulation
UHGV-0160621_1	UniRef90	UniRef90_UPI0015FA2A89	RNA polymerase sigma factor RpoD	NA
UHGV-0160621_1	eggNOG-mapper	411469.EUBHAL_01215	Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is the primary sigma factor during exponential growth	NA
UHGV-0160621_1	PADLOC	MzaA_00001	NA	mzaABCDE
UHGV-0160621_1	Pfam	PF04539	Sigma-70 region 3	Sigma70_r3
UHGV-0160621_1	Pfam	PF04545	Sigma-70, region 4	Sigma70_r4
UHGV-0160621_1	NCBIFam	TIGR02937.1	sigma-70 family RNA polymerase sigma factor	NA
UHGV-0160621_1	COG	COG0568	DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32)	NA
UHGV-0160621_2	eggNOG-mapper	1226322.HMPREF1545_00079	NA	NA
UHGV-0160621_3	eggNOG-mapper	476272.RUMHYD_01772	NA	NA
UHGV-0160621_3	Structural annotation	PF12510	NA	NA
UHGV-0160621_4	PHROG	phrog_20016	NA	unknown function
UHGV-0160621_4	UniRef90	UniRef90_A0A285PT46	Tumour necrosis factor-like domain	NA
UHGV-0160621_4	eggNOG-mapper	1226322.HMPREF1545_00077	NA	NA
UHGV-0160621_4	Structural annotation	PF18573, NF033147	NA	NA
UHGV-0160621_5	PHROG	phrog_16490	NA	unknown function
UHGV-0160621_5	eggNOG-mapper	476272.RUMHYD_01770	NA	NA
UHGV-0160621_6	PHROG	phrog_21718	NA	unknown function
UHGV-0160621_6	UniRef90	UniRef90_A0A285PT36	Consensus disorder prediction	NA
UHGV-0160621_6	eggNOG-mapper	476272.RUMHYD_01768	NA	NA
UHGV-0160621_7	PHROG	phrog_3754	NA	unknown function
UHGV-0160621_7	eggNOG-mapper	476272.RUMHYD_01764	NA	NA
UHGV-0160621_8	UniRef90	UniRef90_A0A285PXT6	Winged helix-turn-helix DNA-binding domain	NA
UHGV-0160621_9	PHROG	phrog_199	holin	lysis
UHGV-0160621_9	UniRef90	UniRef90_A0A285PUE3	Bacteriophage holin family	NA
UHGV-0160621_9	eggNOG-mapper	394503.Ccel_2943	toxin secretion phage lysis holin	NA
UHGV-0160621_9	Pfam	PF05105	Bacteriophage holin family	Phage_holin_4_1
UHGV-0160621_9	COG	COG4824	Phage-related holin (Lysis protein)	NA
UHGV-0160621_9	Structural annotation	PF05105, TIGR01593, COG4824	NA	NA
UHGV-0160621_10	COG	COG3204	NA	NA
UHGV-0160621_12	Structural annotation	PF07041	NA	NA
UHGV-0160621_13	eggNOG-mapper	1410624.JNKK01000017_gene1988	NA	NA
UHGV-0160621_13	Structural annotation	PF18614, MF_00216, NF003076, COG1585	NA	NA
UHGV-0160621_14	eggNOG-mapper	1392487.JIAD01000001_gene511	NA	NA
UHGV-0160621_14	Structural annotation	PF14594, NF033848, COG4379	NA	NA
UHGV-0160621_15	UniRef90	UniRef90_A0A285PT43	Fibronectin type III	NA
UHGV-0160621_15	eggNOG-mapper	1410624.JNKK01000045_gene550	Fibronectin type 3 domain	NA
UHGV-0160621_15	Pfam	PF00041	Fibronectin type III domain	fn3
UHGV-0160621_15	Structural annotation	PF02010, PF06995, PF16794, PF16303, PF19271, MF_04116, NF010681, TIGR02126, COG3499, COG3401	NA	NA
UHGV-0160621_16	PHROG	phrog_1533	tail length tape measure protein	tail
UHGV-0160621_16	UniRef90	UniRef90_A0A285PTB9	Phage tail tape measure protein	NA
UHGV-0160621_16	eggNOG-mapper	641112.ACOK01000073_gene2904	Phage tail tape measure protein, TP901 family	NA
UHGV-0160621_16	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-0160621_16	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-0160621_16	COG	COG5283	Phage-related tail protein	NA
UHGV-0160621_16	Structural annotation	PF10145, TIGR01760, COG5280	NA	NA
UHGV-0160621_18	UniRef90	UniRef90_A0A285PXU7	Consensus disorder prediction	NA
UHGV-0160621_19	PHROG	phrog_885	major tail protein	tail
UHGV-0160621_19	UniRef90	UniRef90_A0A843J9F0	Ig-like domain-containing protein	NA
UHGV-0160621_19	eggNOG-mapper	1504822.CCNO01000012_gene492	NA	NA
UHGV-0160621_19	Structural annotation	PF06488, TIGR01603, COG5437	NA	NA
UHGV-0160621_20	Structural annotation	PF11367	NA	NA
UHGV-0160621_21	PHROG	phrog_17977	NA	unknown function
UHGV-0160621_21	UniRef90	UniRef90_A0A285PT57	Phage head-tail joining protein	NA
UHGV-0160621_21	Pfam	PF05521	Phage head-tail joining protein	Phage_H_T_join
UHGV-0160621_21	NCBIFam	TIGR01563.1	phage head closure protein	NA
UHGV-0160621_21	Structural annotation	PF07405, TIGR01563, COG5614	NA	NA
UHGV-0160621_22	PHROG	phrog_1236	head protein	head and packaging
UHGV-0160621_23	PHROG	phrog_544	major head protein	head and packaging
UHGV-0160621_23	UniRef90	UniRef90_A0A1C6B5R0	S-l_SbsC_C domain-containing protein	NA
UHGV-0160621_23	eggNOG-mapper	476272.RUMHYD_01776	NA	NA
UHGV-0160621_23	Structural annotation	PF03864, MF_04119, TIGR04387, COG4834	NA	NA
UHGV-0160621_24	UniRef90	UniRef90_A0A6B9SU02	Fibronectin autolysin	NA
UHGV-0160621_24	Structural annotation	PF06810	NA	NA
UHGV-0160621_25	KOfam	K07273	acm; lysozyme	NA
UHGV-0160621_25	PHROG	phrog_291	endolysin	lysis
UHGV-0160621_25	UniRef90	UniRef90_A0A285PUE0	Lysozyme	NA
UHGV-0160621_25	eggNOG-mapper	1235800.C819_00458	Glycosyl hydrolases family 25	NA
UHGV-0160621_25	Pfam	PF01183	Glycosyl hydrolases family 25	Glyco_hydro_25
UHGV-0160621_25	Pfam	PF01471	Putative peptidoglycan binding domain	PG_binding_1
UHGV-0160621_25	COG	COG3757	Lyzozyme M1 (1,4-beta-N-acetylmuramidase), GH25 family	NA
UHGV-0160621_25	Structural annotation	PF01183, PF01471, MF_02227, NF007360, COG3757, COG3409	NA	NA
UHGV-0160621_26	eggNOG-mapper	411469.EUBHAL_00974	CHAP domain	NA
UHGV-0160621_26	COG	COG0741	Soluble lytic murein transglycosylase or regulatory protein s ( may contain LysM/invasin domain)	NA
UHGV-0160621_26	Structural annotation	PF05382	NA	NA
UHGV-0160621_27	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0160621_27	UniRef90	UniRef90_A0A285PXV7	Bacteriophage HK97-gp10, putative tail-component	NA
UHGV-0160621_27	eggNOG-mapper	1504822.CCNO01000013_gene284	Bacteriophage HK97-gp10, putative tail-component	NA
UHGV-0160621_27	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-0160621_27	NCBIFam	TIGR01725.1	HK97-gp10 family putative phage morphogenesis protein	NA
UHGV-0160621_27	Structural annotation	PF20039, TIGR01725, COG5005	NA	NA
UHGV-0160621_28	PHROG	phrog_2662	portal protein	head and packaging
UHGV-0160621_28	UniRef90	UniRef90_A0A285PUG1	Phage head morphogenesis domain	NA
UHGV-0160621_28	eggNOG-mapper	1504822.CCNO01000013_gene286	cell adhesion	NA
UHGV-0160621_28	Pfam	PF04233	Phage Mu protein F like protein	Phage_Mu_F
UHGV-0160621_28	COG	COG2369	NA	NA
UHGV-0160621_28	Structural annotation	PF04233, TIGR01641, COG2369	NA	NA
UHGV-0160621_29	PHROG	phrog_64	portal protein	head and packaging
UHGV-0160621_29	UniRef90	UniRef90_A0A285PU84	Phage portal protein, SPP1 Gp6-like	NA
UHGV-0160621_29	eggNOG-mapper	673376.F2VHW1_9CAUD	Phage portal protein, SPP1 Gp6-like	NA
UHGV-0160621_29	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0160621_29	Structural annotation	PF05133, MF_04120, TIGR01538, COG3567	NA	NA
UHGV-0160621_30	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0160621_30	PHROG	phrog_10250	NA	unknown function
UHGV-0160621_30	UniRef90	UniRef90_A0A285PT65	Phage_term_2: phage terminase, large subunit, PBSX family	NA
UHGV-0160621_30	eggNOG-mapper	476272.RUMHYD_01756	NA	NA
UHGV-0160621_30	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-0160621_30	Pfam	PF17288	Terminase RNAseH like domain	Terminase_3C
UHGV-0160621_30	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0160621_30	COG	COG1783	Phage terminase large subunit	NA
UHGV-0160621_30	Structural annotation	PF04466, PF20441, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0160621_31	PHROG	phrog_309	terminase small subunit	head and packaging
UHGV-0160621_31	UniRef90	UniRef90_A0A285PT83	Homeobox domain-like	NA
UHGV-0160621_31	eggNOG-mapper	272558.10176158	Homeodomain-like domain	NA
UHGV-0160621_31	COG	COG2963	Transposase InsE and inactivated derivatives	NA
UHGV-0160621_31	Structural annotation	PF07141	NA	NA
UHGV-0160621_32	UniRef90	UniRef90_A0A285PYI3	Homeodomain-like domain	NA
UHGV-0160621_32	eggNOG-mapper	445972.ANACOL_01835	NA	NA
UHGV-0160621_32	Pfam	PF13384	Homeodomain-like domain	HTH_23
UHGV-0160621_32	Structural annotation	PF06530, MF_00674, TIGR01636, COG1342	NA	NA
UHGV-0160621_36	Structural annotation	PF02185	NA	NA
UHGV-0160621_38	PHROG	phrog_190	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0160621_38	UniRef90	UniRef90_UPI001ADD7D79	NA	NA
UHGV-0160621_38	eggNOG-mapper	180504.Q8W6N9_9CAUD	NA	NA
UHGV-0160621_38	Pfam	PF06356	NA	DUF1064
UHGV-0160621_38	Structural annotation	PF06356	NA	NA
UHGV-0160621_39	PHROG	phrog_7566	NA	unknown function
UHGV-0160621_39	UniRef90	UniRef90_A0A371ATG2	Phosphoenolpyruvate carboxykinase	NA
UHGV-0160621_39	eggNOG-mapper	1304866.K413DRAFT_1198	NA	NA
UHGV-0160621_40	PHROG	phrog_7964	NA	unknown function
UHGV-0160621_40	UniRef90	UniRef90_A0A285PUH1	Trimeric LpxA-like	NA
UHGV-0160621_40	eggNOG-mapper	411470.RUMGNA_02189	Catalyzes the N-acylation of UDP-3-O-acylglucosamine using 3-hydroxyacyl-ACP as the acyl donor. Is involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell	NA
UHGV-0160621_40	Pfam	PF18836	YdcK Beta solenoid repeat	B_solenoid_ydck
UHGV-0160621_40	COG	COG1044	UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase	NA
UHGV-0160621_40	Structural annotation	NF040481	NA	NA
UHGV-0160621_41	PHROG	phrog_72	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
UHGV-0160621_41	UniRef90	UniRef90_A0A285PU94	Recombinase NinB	NA
UHGV-0160621_41	eggNOG-mapper	1410650.JHWL01000003_gene2850	NA	NA
UHGV-0160621_41	Structural annotation	PF05772, NF007281	NA	NA
UHGV-0160621_42	PHROG	phrog_155	Erf-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0160621_42	UniRef90	UniRef90_A0A285PT75	Essential recombination function protein	NA
UHGV-0160621_42	eggNOG-mapper	762550.LEGAS_1605	ERF superfamily	NA
UHGV-0160621_42	Pfam	PF04404	ERF superfamily	ERF
UHGV-0160621_42	Structural annotation	PF04404, TIGR00607, COG4712	NA	NA
UHGV-0160621_43	PHROG	phrog_253	Mu Gam-like end protection	DNA, RNA and nucleotide metabolism
UHGV-0160621_43	UniRef90	UniRef90_A0A285PT93	Siphovirus Gp157	NA
UHGV-0160621_43	eggNOG-mapper	411470.RUMGNA_02192	Siphovirus Gp157	NA
UHGV-0160621_43	Pfam	PF05565	Siphovirus Gp157	Sipho_Gp157
UHGV-0160621_43	Structural annotation	PF05565	NA	NA
UHGV-0160621_47	PHROG	phrog_9804	NA	unknown function
UHGV-0160621_47	UniRef90	UniRef90_A0A285PUF9	Loader and inhibitor of phage G40P	NA
UHGV-0160621_47	eggNOG-mapper	1121344.JHZO01000003_gene981	Loader and inhibitor of phage G40P	NA
UHGV-0160621_47	Pfam	PF11417	Loader and inhibitor of phage G40P	Inhibitor_G39P
UHGV-0160621_47	Structural annotation	PF11417	NA	NA
UHGV-0160621_48	PHROG	phrog_6969	NA	unknown function
UHGV-0160621_48	UniRef90	UniRef90_A0A285PT73	Helix-turn-helix domain	NA
UHGV-0160621_48	eggNOG-mapper	1232446.BAIE02000002_gene816	NA	NA
UHGV-0160621_48	Pfam	PF13730	Helix-turn-helix domain	HTH_36
UHGV-0160621_48	Structural annotation	PF05584, MF_01911, TIGR01610, COG3355	NA	NA
UHGV-0160621_51	PHROG	phrog_463	anti-repressor	transcription regulation
UHGV-0160621_51	UniRef90	UniRef90_A0A285PXX7	ORF6C domain	NA
UHGV-0160621_51	eggNOG-mapper	411490.ANACAC_00813	BRO family, N-terminal domain	NA
UHGV-0160621_51	Pfam	PF02498	BRO family, N-terminal domain	Bro-N
UHGV-0160621_51	Pfam	PF10552	ORF6C domain	ORF6C
UHGV-0160621_51	COG	COG3617	Prophage antirepressor	NA
UHGV-0160621_51	Structural annotation	PF10552, PF02498, TIGR02681, COG3617	NA	NA
UHGV-0160621_53	UniRef90	UniRef90_R5GPD4	Toxin-antitoxin system antitoxin component Xre family	NA
UHGV-0160621_53	eggNOG-mapper	910314.HMPREF9220_0645	NA	NA
UHGV-0160621_53	Structural annotation	PF13560, NF041951, COG1396	NA	NA
UHGV-0160621_54	KOfam	K22299	rghR; HTH-type transcriptional regulator, competence development regulator	NA
UHGV-0160621_54	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0160621_54	UniRef90	UniRef90_UPI001ADDE640	helix-turn-helix domain-containing protein	NA
UHGV-0160621_54	eggNOG-mapper	332101.JIBU02000023_gene4733	Helix-turn-helix domain protein	NA
UHGV-0160621_54	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0160621_54	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0160621_54	Structural annotation	PF12844, NF041951, COG1396	NA	NA
UHGV-0160621_56	PHROG	phrog_806	NA	unknown function
UHGV-0160621_56	UniRef90	UniRef90_A0A285PTA3	NA	NA
UHGV-0160621_56	eggNOG-mapper	697329.Rumal_0454	NA	NA
UHGV-0160621_56	Pfam	PF11611	NA	DUF4352
UHGV-0160621_56	Structural annotation	PF11611, MF_00791, NF003967, COG2967	NA	NA
UHGV-0160621_58	KOfam	K19090	cas5t; CRISPR-associated protein Cas5t	NA
UHGV-0160621_58	UniRef90	UniRef90_A0A374MRC8	CRISPR-associated protein Cas5	NA
UHGV-0160621_58	eggNOG-mapper	411469.EUBHAL_02183	CRISPR-associated protein Cas5	NA
UHGV-0160621_58	PADLOC	Cas5b_WP_177377672.1	NA	CRISPR-CAS
UHGV-0160621_58	NCBIFam	TIGR02593.1	CRISPR-associated protein Cas5	NA
UHGV-0160621_58	COG	COG1688	CRISPR/Cas system-associated protein Cas5, RAMP superfamily	NA
UHGV-0160621_60	eggNOG-mapper	877421.AUJT01000008_gene2736	NA	NA
UHGV-0160621_61	UniRef90	UniRef90_A0A285PUG9	Cro/C1-type HTH DNA-binding domain	NA
UHGV-0160621_61	eggNOG-mapper	1235790.C805_02349	Transcriptional regulator	NA
UHGV-0160621_61	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-0160621_61	COG	COG3655	DNA-binding transcriptional regulator, XRE family	NA
UHGV-0160621_61	Structural annotation	PF13443, NF000090, COG3655	NA	NA
UHGV-0160621_62	AcrCatalog	cluster_32378	NA	NA
UHGV-0160621_63	AcrCatalog	cluster_11486	NA	NA
UHGV-0160621_64	PHROG	phrog_13470	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0160621_64	UniRef90	UniRef90_A0A285PXY3	DNA-binding domain	NA
UHGV-0160621_64	eggNOG-mapper	478749.BRYFOR_06178	AP2 domain protein	NA
UHGV-0160621_65	KOfam	K06400	spoIVCA; site-specific DNA recombinase	NA
UHGV-0160621_65	PHROG	phrog_95	integrase	integration and excision
UHGV-0160621_65	UniRef90	UniRef90_A0A285PUJ0	Resolvase, N terminal domain	NA
UHGV-0160621_65	eggNOG-mapper	1235792.C808_00048	Resolvase, N terminal domain	NA
UHGV-0160621_65	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-0160621_65	Pfam	PF13408	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
UHGV-0160621_65	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-0160621_65	Structural annotation	PF00239, NF041201, COG1961	NA	NA