UHGV-0160750

Genome information

Genome length 38,234 bps

CDS count 61

Completeness 100.00% (complete)

geNomad score 0.9806

Prediction confidence Confident

Genome information
Genome ID	UHGV-0160750
vOTU ID	vOTU-046293
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_487041
BioSample	SAMN06110433
Country	Netherlands
Virus prediction confidence	Confident

Quality assessment
CheckV method	DTR
CheckV completeness	100.00% (complete)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	15
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9806
Virus hallmark genes (geNomad)	12
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	28.78
Jumbo phage	No

Genome content
Genome length	38,234 bps
GC content	59.42%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	61
CDS density	90.58%
Average CDS length	571.53 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0160750_1	eggNOG-mapper	1378168.N510_03079	NA	NA
UHGV-0160750_3	Structural annotation	PF18573, NF033147	NA	NA
UHGV-0160750_11	KOfam	K08640	E3.4.17.14; zinc D-Ala-D-Ala carboxypeptidase [EC:3.4.17.14]	NA
UHGV-0160750_11	PHROG	phrog_894	endolysin	lysis
UHGV-0160750_11	UniRef90	UniRef90_K1TJK4	Peptidase_M15_3 domain-containing protein (Fragment)	NA
UHGV-0160750_11	eggNOG-mapper	1235797.C816_04171	Peptidase M15	NA
UHGV-0160750_11	Pfam	PF08291	Peptidase M15	Peptidase_M15_3
UHGV-0160750_11	COG	COG3108	NA	NA
UHGV-0160750_11	Structural annotation	PF05951, COG3108	NA	NA
UHGV-0160750_12	PHROG	phrog_18955	NA	unknown function
UHGV-0160750_12	UniRef90	UniRef90_UPI00164D2830	phosphodiester glycosidase family protein	NA
UHGV-0160750_12	Pfam	PF09992	Phosphodiester glycosidase	NAGPA
UHGV-0160750_12	COG	COG4632	Sugar-P-sugar glycosidase (uncovering enzyme, UCE), NAGPA superfamily	NA
UHGV-0160750_12	Structural annotation	PF09992, COG4632	NA	NA
UHGV-0160750_14	PHROG	phrog_13256	NA	unknown function
UHGV-0160750_14	eggNOG-mapper	1226322.HMPREF1545_00132	NA	NA
UHGV-0160750_15	PHROG	phrog_4105	NA	unknown function
UHGV-0160750_15	eggNOG-mapper	411460.RUMTOR_01326	NA	NA
UHGV-0160750_16	PHROG	phrog_3904	tail fiber protein	tail
UHGV-0160750_16	eggNOG-mapper	1519439.JPJG01000060_gene1892	Collagen triple helix repeat (20 copies)	NA
UHGV-0160750_16	Pfam	PF01391	Collagen triple helix repeat (20 copies)	Collagen
UHGV-0160750_16	COG	COG3064	Membrane protein TolA involved in colicin uptake	NA
UHGV-0160750_17	PHROG	phrog_32744	NA	unknown function
UHGV-0160750_17	eggNOG-mapper	1232449.BAHV02000010_gene2725	NA	NA
UHGV-0160750_17	Structural annotation	PF14594, PF21722, NF033848, COG4379	NA	NA
UHGV-0160750_19	PHROG	phrog_23464	NA	unknown function
UHGV-0160750_19	eggNOG-mapper	33035.JPJF01000023_gene3232	phage tail tape measure protein	NA
UHGV-0160750_19	COG	COG5412	Phage-related protein	NA
UHGV-0160750_19	Structural annotation	TIGR01760, COG5280	NA	NA
UHGV-0160750_21	PHROG	phrog_88	major tail protein	tail
UHGV-0160750_21	UniRef90	UniRef90_R5EB96	Phage major tail protein phi13 family	NA
UHGV-0160750_21	Structural annotation	PF04630, TIGR01603, COG3498	NA	NA
UHGV-0160750_22	UniRef90	UniRef90_R5IIS5	HK97 gp10 family phage protein	NA
UHGV-0160750_22	eggNOG-mapper	1203606.HMPREF1526_00974	NA	NA
UHGV-0160750_22	Structural annotation	TIGR01725	NA	NA
UHGV-0160750_23	UniRef90	UniRef90_A0A4S2AEF8	Phage tail protein	NA
UHGV-0160750_23	eggNOG-mapper	1203606.HMPREF1526_00975	NA	NA
UHGV-0160750_23	Structural annotation	PF05657	NA	NA
UHGV-0160750_24	PHROG	phrog_25	head closure Hc1	connector
UHGV-0160750_24	UniRef90	UniRef90_UPI001898DBDF	phage head closure protein	NA
UHGV-0160750_24	eggNOG-mapper	1262449.CP6013_1044	Phage head-tail joining protein	NA
UHGV-0160750_24	Pfam	PF05521	Phage head-tail joining protein	Phage_H_T_join
UHGV-0160750_24	NCBIFam	TIGR01563.1	phage head closure protein	NA
UHGV-0160750_24	COG	COG5614	Phage head-tail adaptor	NA
UHGV-0160750_24	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0160750_25	UniRef90	UniRef90_UPI0010315EA4	phage gp6-like head-tail connector protein	NA
UHGV-0160750_25	eggNOG-mapper	742738.HMPREF9460_00878	NA	NA
UHGV-0160750_25	NCBIFam	TIGR01560.2	head-tail connector protein	NA
UHGV-0160750_25	Structural annotation	PF05135, TIGR01560	NA	NA
UHGV-0160750_26	PHROG	phrog_10	major head protein	head and packaging
UHGV-0160750_26	UniRef90	UniRef90_A0A1Y4RLC8	Phage major capsid protein	NA
UHGV-0160750_26	eggNOG-mapper	1236976.JCM16418_795	Phage capsid family	NA
UHGV-0160750_26	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0160750_26	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0160750_26	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0160750_26	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0160750_27	PHROG	phrog_16951	NA	unknown function
UHGV-0160750_27	eggNOG-mapper	742738.HMPREF9460_04070	NA	NA
UHGV-0160750_27	Structural annotation	PF04586, TIGR01543, COG3740	NA	NA
UHGV-0160750_28	PHROG	phrog_12	portal protein	head and packaging
UHGV-0160750_28	UniRef90	UniRef90_A0A845R2J9	Phage portal protein	NA
UHGV-0160750_28	eggNOG-mapper	397288.C806_01508	Phage portal protein	NA
UHGV-0160750_28	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0160750_28	NCBIFam	TIGR01537.1	phage portal protein	NA
UHGV-0160750_28	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0160750_28	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-0160750_30	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0160750_30	UniRef90	UniRef90_A0A845R4S1	Terminase large subunit	NA
UHGV-0160750_30	eggNOG-mapper	742738.HMPREF9460_00872	Phage Terminase	NA
UHGV-0160750_30	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0160750_30	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0160750_30	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0160750_30	Structural annotation	PF20441, PF03354, MF_04145, TIGR01547, COG4626	NA	NA
UHGV-0160750_31	PHROG	phrog_83	terminase small subunit	head and packaging
UHGV-0160750_31	UniRef90	UniRef90_UPI001EDE2A13	phage terminase small subunit P27 family	NA
UHGV-0160750_31	eggNOG-mapper	1007096.BAGW01000012_gene2373	Phage terminase, small subunit	NA
UHGV-0160750_31	Pfam	PF05119	Phage terminase, small subunit	Terminase_4
UHGV-0160750_31	NCBIFam	TIGR01558.1	phage terminase small subunit P27 family	NA
UHGV-0160750_31	COG	COG3747	Phage terminase, small subunit	NA
UHGV-0160750_31	Structural annotation	PF05119, TIGR01558, COG3747	NA	NA
UHGV-0160750_32	PHROG	phrog_21498	NA	unknown function
UHGV-0160750_32	UniRef90	UniRef90_C7MM70	ParB-like nuclease	NA
UHGV-0160750_32	eggNOG-mapper	469378.Ccur_02830	DNA binding	NA
UHGV-0160750_32	PADLOC	MTase_II_00015	Type II methyltransferase	RM
UHGV-0160750_32	Pfam	PF02195	ParB/Sulfiredoxin domain	ParBc
UHGV-0160750_32	COG	COG1475	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	NA
UHGV-0160750_32	Structural annotation	PF02195, PF05869, MF_02015, TIGR00180, TIGR01712, COG1475	NA	NA
UHGV-0160750_33	PHROG	phrog_144	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0160750_33	UniRef90	UniRef90_UPI001EDE5545	HNH endonuclease	NA
UHGV-0160750_33	eggNOG-mapper	693746.OBV_19960	HNH endonuclease	NA
UHGV-0160750_33	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0160750_33	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0160750_33	Structural annotation	PF01844, COG1403	NA	NA
UHGV-0160750_34	UniRef90	UniRef90_UPI001F232519	cysteine-rich KTR domain-containing protein	NA
UHGV-0160750_34	eggNOG-mapper	1226322.HMPREF1545_00110	Cysteine-rich KTR	NA
UHGV-0160750_34	Pfam	PF14205	Cysteine-rich KTR	Cys_rich_KTR
UHGV-0160750_35	PHROG	phrog_3584	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0160750_35	eggNOG-mapper	693746.OBV_19950	NA	NA
UHGV-0160750_35	Structural annotation	PF05840	NA	NA
UHGV-0160750_40	UniRef90	UniRef90_A0A8D9PDT5	Hydrogenase/urease nickel incorporation protein	NA
UHGV-0160750_40	Pfam	PF13240	zinc-ribbon domain	zinc_ribbon_2
UHGV-0160750_41	PHROG	phrog_3136	NA	unknown function
UHGV-0160750_41	UniRef90	UniRef90_A0A3D0HBD2	ASCH domain-containing protein	NA
UHGV-0160750_41	eggNOG-mapper	97139.C824_00742	The globular domain of the protein is located near the polypeptide exit tunnel on the outside of the subunit, while an extended beta-hairpin is found that lines the wall of the exit tunnel in the center of the 70S ribosome	NA
UHGV-0160750_41	COG	COG4933	Predicted transcriptional regulator, contains an HTH and PUA-like domains	NA
UHGV-0160750_41	Structural annotation	PF04266, MF_00684, NF008917, COG4933	NA	NA
UHGV-0160750_43	PHROG	phrog_757	DNA methyltransferase	other
UHGV-0160750_43	UniRef90	UniRef90_UPI0006A41431	DNA cytosine methyltransferase	NA
UHGV-0160750_43	eggNOG-mapper	1235790.C805_00032	DNA (cytosine-5-)-methyltransferase activity	NA
UHGV-0160750_43	COG	COG0270	DNA-cytosine methylase	NA
UHGV-0160750_43	Structural annotation	PF00145, MF_01872, TIGR00675, COG0270	NA	NA
UHGV-0160750_44	PHROG	phrog_7704	NA	unknown function
UHGV-0160750_44	UniRef90	UniRef90_A0A2V2EEG3	NA	NA
UHGV-0160750_44	Pfam	PF04448	NA	DUF551
UHGV-0160750_44	Structural annotation	NF041588	NA	NA
UHGV-0160750_45	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0160750_45	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0160750_45	UniRef90	UniRef90_UPI001C02B0E9	single-stranded DNA-binding protein	NA
UHGV-0160750_45	eggNOG-mapper	1519439.JPJG01000082_gene432	Single-strand binding protein family	NA
UHGV-0160750_45	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0160750_45	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0160750_45	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0160750_45	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0160750_45	Structural annotation	PF00436, MF_00984, NF005241, COG0629	NA	NA
UHGV-0160750_48	KOfam	K03497	parB, spo0J; ParB family transcriptional regulator, chromosome partitioning protein	NA
UHGV-0160750_48	PHROG	phrog_27290	NA	unknown function
UHGV-0160750_48	UniRef90	UniRef90_UPI001C029D7C	ParB N-terminal domain-containing protein	NA
UHGV-0160750_48	eggNOG-mapper	742738.HMPREF9460_00856	ParB-like nuclease domain	NA
UHGV-0160750_48	Pfam	PF02195	ParB/Sulfiredoxin domain	ParBc
UHGV-0160750_48	COG	COG1475	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	NA
UHGV-0160750_48	Structural annotation	PF02195, MF_02015, TIGR04285, COG1475	NA	NA
UHGV-0160750_49	KOfam	K03496	parA, soj; chromosome partitioning protein	NA
UHGV-0160750_49	PHROG	phrog_164	ParA-like partition protein	DNA, RNA and nucleotide metabolism
UHGV-0160750_49	UniRef90	UniRef90_UPI001BB48231	ParA family protein	NA
UHGV-0160750_49	eggNOG-mapper	693746.OBV_19850	Anion-transporting ATPase	NA
UHGV-0160750_49	Pfam	PF13614	AAA domain	AAA_31
UHGV-0160750_49	COG	COG1192	ParA-like ATPase involved in chromosome/plasmid partitioning or cellulose biosynthesis protein BcsQ	NA
UHGV-0160750_49	Structural annotation	PF13614, MF_00533, TIGR03453, COG1192	NA	NA
UHGV-0160750_51	KOfam	K02314	dnaB; replicative DNA helicase [EC:5.6.2.3]	NA
UHGV-0160750_51	PHROG	phrog_19	DnaB-like replicative helicase	DNA, RNA and nucleotide metabolism
UHGV-0160750_51	UniRef90	UniRef90_UPI00195856D7	AAA family ATPase	NA
UHGV-0160750_51	eggNOG-mapper	1226322.HMPREF1545_00095	DnaB-like helicase N terminal domain	NA
UHGV-0160750_51	Pfam	PF00772	DnaB-like helicase N terminal domain	DnaB
UHGV-0160750_51	Pfam	PF03796	DnaB-like helicase C terminal domain	DnaB_C
UHGV-0160750_51	COG	COG0305	Replicative DNA helicase	NA
UHGV-0160750_51	Structural annotation	PF03796, PF00772, MF_04155, NF005240, COG0305	NA	NA
UHGV-0160750_52	PHROG	phrog_270	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0160750_52	UniRef90	UniRef90_UPI0006877B23	helix-turn-helix domain-containing protein	NA
UHGV-0160750_52	eggNOG-mapper	1007096.BAGW01000033_gene1617	ROK family	NA
UHGV-0160750_52	Pfam	PF13730	Helix-turn-helix domain	HTH_36
UHGV-0160750_52	COG	COG3355	Predicted transcriptional regulator	NA
UHGV-0160750_52	Structural annotation	PF02295, MF_01819, TIGR04176, COG3355	NA	NA
UHGV-0160750_53	PHROG	phrog_6499	transcriptional regulator	transcription regulation
UHGV-0160750_53	UniRef90	UniRef90_UPI001C01DF91	helix-turn-helix transcriptional regulator	NA
UHGV-0160750_53	eggNOG-mapper	1226322.HMPREF1545_00092	Helix-turn-helix XRE-family like proteins	NA
UHGV-0160750_53	Pfam	PF13560	Helix-turn-helix domain	HTH_31
UHGV-0160750_53	COG	COG1813	Archaeal ribosome-binding protein aMBF1, putative translation factor, contains Zn-ribbon and HTH domains	NA
UHGV-0160750_53	Structural annotation	PF01381, NF040522, COG1476	NA	NA
UHGV-0160750_54	Structural annotation	PF12728, NF040990	NA	NA
UHGV-0160750_55	KOfam	K07729	K07729; putative transcriptional regulator	NA
UHGV-0160750_55	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0160750_55	UniRef90	UniRef90_UPI00030EB95F	helix-turn-helix domain-containing protein	NA
UHGV-0160750_55	eggNOG-mapper	1007096.BAGW01000011_gene2356	sequence-specific DNA binding	NA
UHGV-0160750_55	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0160750_55	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-0160750_55	Structural annotation	PF01381, NF041951, COG1476	NA	NA
UHGV-0160750_57	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0160750_57	UniRef90	UniRef90_G4L1F8	Putative Xre family DNA-binding protein	NA
UHGV-0160750_57	eggNOG-mapper	693746.OBV_19770	sequence-specific DNA binding	NA
UHGV-0160750_57	Pfam	PF07022	Bacteriophage CI repressor helix-turn-helix domain	Phage_CI_repr
UHGV-0160750_57	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-0160750_57	Structural annotation	PF12844, MF_02017, NF041951, COG1396	NA	NA
UHGV-0160750_60	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0160750_60	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0160750_60	Structural annotation	PF01381, MF_02017, TIGR03070, COG3655	NA	NA
UHGV-0160750_61	KOfam	K14059	int; integrase	NA
UHGV-0160750_61	PHROG	phrog_1	integrase	integration and excision
UHGV-0160750_61	UniRef90	UniRef90_A0A1H8A220	Site-specific recombinase XerD	NA
UHGV-0160750_61	eggNOG-mapper	693746.OBV_01970	Phage integrase family	NA
UHGV-0160750_61	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0160750_61	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0160750_61	Structural annotation	PF00589, PF14659, MF_02055, TIGR02224, COG4974	NA	NA